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アセンブル , シーケンス , Assemble , Sequence , Cucurbita moschata , Tropical pumpkin, Tropical squash , カボチャ東洋種, ニホンカボチャ

Cucurbita moschata

Genome Assembly ID:t3662.G001

Sequence Name:Cmoschata_v1

Details of the Assembled Genome Sequences

Assembly Name Cmoschata_v1 Biological Sample cv. Rifu
Number of Sequences 21 Number of Chromosomes 2n = 2x = 40
Total Length (bp) 273,422,085 N50 Length (bp) 12,190,726
Number of Genes 32,205 Number of Genes Source File Cmoschata_v1.protein.fa
Number of Genes Annotated by Hayai-annotation 32,205 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina Read Depth 215.5x
Assembly Method SOAPdenovo v. 2.04 Estimated Genome Size (Mb) 372
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Shan Wu (Cornell University), Zhangjun Fei (ditto), Yong Xu (Beijing Key Laboratory of Vegetable Germplasm Improvement) Data Source CuGenDB
DOI/PMID 10.1016/j.molp.2017.09.003 Data Source URL http://cucurbitgenomics.org/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.7%[S:83.3%,D:15.4%],F:0.4%,M:0.9%,n:1614 BUSCO Gene (pep/cds) C:94.5%[S:80.7%,D:13.8%],F:2.9%,M:2.6%,n:1614

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