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アセンブル , シーケンス , Assemble , Sequence , Cucurbita maxima , Winter pumpkin, Winter squash , カボチャ西洋種, セイヨウカボチャ

Cucurbita maxima

Genome Assembly ID:t3661.G001

Sequence Name:Cmaxima_v1.1

Details of the Assembled Genome Sequences

Assembly Name Cmaxima_v1.1 Biological Sample cv. Rimu
Number of Sequences 21 Number of Chromosomes 2n = 2x = 40
Total Length (bp) 279,691,401 N50 Length (bp) 10,608,204
Number of Genes 32,076 Number of Genes Source File Cmaxima_v1.1.protein.fa
Number of Genes Annotated by Hayai-annotation 32,076 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina Read Depth 282.7x
Assembly Method SOAPdenovo v. 2.04 Estimated Genome Size (Mb) 387
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Shan Wu (Cornell University), Zhangjun Fei (ditto), Yong Xu (Beijing Key Laboratory of Vegetable Germplasm Improvement) Data Source CuGenDB
DOI/PMID 10.1016/j.molp.2017.09.003 Data Source URL http://cucurbitgenomics.org/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.4%[S:84.6%,D:13.8%],F:0.6%,M:1.0%,n:1614 BUSCO Gene (pep/cds) C:95.5%[S:82.3%,D:13.2%],F:2.0%,M:2.5%,n:1614

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