Sequence Name:CM3.6.1_pseudomol
Assembly Name | CM3.6.1_pseudomol | Biological Sample | DHL92 |
Number of Sequences | 13 | Number of Chromosomes | 2n = 2x = 24 |
Total Length (bp) | 417,002,282 | N50 Length (bp) | 34,318,044 |
Number of Genes | 29,980 | Number of Genes Source File | CM4.0_protein.fasta |
Number of Genes Annotated by Hayai-annotation | 29,980 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | Illumina, 454, Sanger | Read Depth | 13.52x |
Assembly Method | Newbler 2.5 | Estimated Genome Size (Mb) | 450 |
Sequencing Method Comments | NA | Comments | A double-haploid line, derived from the cross between PI 161375 (Songwhan Charmi, spp. agrestis) and the 'Piel de Sapo' T111 line (ssp. inodorus) |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Jordi Garcia-Mas (Centre for Research in Agricultural Genomics Consejo Superior de Investigaciones Cientificas-Institut deRecerca i Tecnologia Agroalimentaries-Universitat Autonoma de Barcelona-Universitat de Barcelona), Pere Puigdomenech (ditto) | Data Source | CuGenDB |
DOI/PMID | 10.1073/pnas.1205415109 | Data Source URL | http://cucurbitgenomics.org/ |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:98.2%[S:97.0%,D:1.2%],F:1.1%,M:0.7%,n:1614 | BUSCO Gene (pep/cds) | C:90.2%[S:89.0%,D:1.2%],F:6.3%,M:3.5%,n:1614 |