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アセンブル , シーケンス , Assemble , Sequence , Actinidia chinensis , Kiwifruit (chinensis) , キウイフルーツ (chinensis種)

Actinidia chinensis

Genome Assembly ID:t3625.G001

Sequence Name:Red5_PS1_1.69.0

Details of the Assembled Genome Sequences

Assembly Name Red5_PS1_1.69.0 Biological Sample Red5
Number of Sequences 1,234 Number of Chromosomes 2n = 2x = 58
Total Length (bp) 553,842,477 N50 Length (bp) 18,944,233
Number of Genes 33,115 Number of Genes Source File Actinidia_chinensis.Red5_PS1_1.69.0.pep.all.fa
Number of Genes Annotated by Hayai-annotation 33,115 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, 454 Read Depth NA
Assembly Method Anytag v. 2.5.2, Newbler v. 2.9, SSPACE2 Estimated Genome Size (Mb) 758
Sequencing Method Comments NA Comments A diploid F3 sibcross individual Red5, with a predicted inbreeding coefficient of 37.5%.
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Robert J. Schaffer (The New Zealand Institute for Plant & Food Research Ltd (PFR)) Data Source Ensembl
DOI/PMID 10.1186/s12864-018-4656-3 Data Source URL http://plants.ensembl.org/index.html
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.0%[S:72.7%,D:25.3%],F:1.4%,M:0.6%,n:1614 BUSCO Gene (pep/cds) C:94.8%[S:74.4%,D:20.4%],F:2.3%,M:2.9%,n:1614

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