Sequence Name:Red5_PS1_1.69.0
Assembly Name | Red5_PS1_1.69.0 | Biological Sample | Red5 |
Number of Sequences | 1,234 | Number of Chromosomes | 2n = 2x = 58 |
Total Length (bp) | 553,842,477 | N50 Length (bp) | 18,944,233 |
Number of Genes | 33,115 | Number of Genes Source File | Actinidia_chinensis.Red5_PS1_1.69.0.pep.all.fa |
Number of Genes Annotated by Hayai-annotation | 33,115 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | Illumina, 454 | Read Depth | NA |
Assembly Method | Anytag v. 2.5.2, Newbler v. 2.9, SSPACE2 | Estimated Genome Size (Mb) | 758 |
Sequencing Method Comments | NA | Comments | A diploid F3 sibcross individual Red5, with a predicted inbreeding coefficient of 37.5%. |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Robert J. Schaffer (The New Zealand Institute for Plant & Food Research Ltd (PFR)) | Data Source | Ensembl |
DOI/PMID | 10.1186/s12864-018-4656-3 | Data Source URL | http://plants.ensembl.org/index.html |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:98.0%[S:72.7%,D:25.3%],F:1.4%,M:0.6%,n:1614 | BUSCO Gene (pep/cds) | C:94.8%[S:74.4%,D:20.4%],F:2.3%,M:2.9%,n:1614 |