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アセンブル , シーケンス , Assemble , Sequence , Ipomoea trifida , Wild sweet potato (trifida) , サツマイモ野生種 (trifida種)

Ipomoea trifida

Genome Assembly ID:t35884.G002

Sequence Name:Itr_r2.2

Details of the Assembled Genome Sequences

Assembly Name Itr_r2.2 Biological Sample Mx23Hm
Number of Sequences 16 Number of Chromosomes 2n = 2x = 30
Total Length (bp) 502,237,654 N50 Length (bp) 31,779,616
Number of Genes 34,386 Number of Genes Source File ITR_r2.2_15chr_Mx23Hm.CDS.fa
Number of Genes Annotated by Hayai-annotation 34,501 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio, Hi-C Read Depth 124.5x
Assembly Method SMRT make Estimated Genome Size (Mb) 516
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Sachiko Isobe (Kazusa DNA Res Inst) Data Source Plant GARDEN
DOI/PMID Data Source URL https://plantgarden.jp/
BUSCO Version 5.2.2 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.5%[S:93.4%,D:5.1%],F:0.8%,M:0.7%,n:1614 BUSCO Gene (pep/cds) C:97.2%[S:9.5%,D:87.7%],F:1.7%,M:1.1%,n:1614

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