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アセンブル , シーケンス , Assemble , Sequence , Ipomoea trifida , Wild sweet potato (trifida) , サツマイモ野生種 (trifida種)

Ipomoea trifida

Genome Assembly ID:t35884.G001

Sequence Name:NSP306_trifida_chr_v3

Details of the Assembled Genome Sequences

Assembly Name NSP306_trifida_chr_v3 Biological Sample cv. NCNSP0306
Number of Sequences 16 Number of Chromosomes 2n = 2x = 30
Total Length (bp) 492,382,517 N50 Length (bp) 26,165,527
Number of Genes 44,158 Number of Genes Source File NSP306_trifida_v3.hc.gene_models.pep.fa
Number of Genes Annotated by Hayai-annotation 44,158 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, PacBio, BioNano Read Depth 199x
Assembly Method SOAPdenovo2, Platanus v. 1.2.1, PBJelly v. 15.8.24, Pilon v. 1.13 Estimated Genome Size (Mb) 520
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author C. Robin Buell (Michigan State University), Zhangjun Fei (Cornell University) Data Source Sweetpotato Genomics Resource
DOI/PMID 10.1038/s41467-018-06983-8 Data Source URL http://sweetpotato.plantbiology.msu.edu/index.shtml
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.6%[S:93.2%,D:5.4%],F:0.6%,M:0.8%,n:1614 BUSCO Gene (pep/cds) C:95.7%[S:63.4%,D:32.3%],F:2.0%,M:2.3%,n:1614

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