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アセンブル , シーケンス , Assemble , Sequence , Marchantia polymorpha subsp. ruderalis , Umbrella liverwort , ゼニゴケ (ruderalis亜種)

Marchantia polymorpha

Genome Assembly ID:t3197.G001

Sequence Name:Mpolymorpha_320_v3.0

Details of the Assembled Genome Sequences

Assembly Name Mpolymorpha_320_v3.0 Biological Sample subsp. ruderalis, A single clonal female
Number of Sequences 2,957 Number of Chromosomes n = x = 9
Total Length (bp) 225,761,139 N50 Length (bp) 1,366,373
Number of Genes 24,674 Number of Genes Source File Mpolymorpha_320_v3.1.protein.fa
Number of Genes Annotated by Hayai-annotation 24,674 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, ABI Read Depth 26.74x
Assembly Method ARACHNE_modified v. 200721016 Estimated Genome Size (Mb) 280
Sequencing Method Comments NA Comments A single clonal female derived from backcross 4 between a male Takaragaike-1 (Tak-1) line and a femaleTakaragaike-2 (Tak-2) line (GenBank BioSample: SAMN02199054)
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author John L.Bowman (Monash University), Takayuki Kohchi (Kyoto University), Katsuyuki Yamato (Kindai University) Data Source Phytozome
DOI/PMID 10.1016/j.cell.2017.09.030 Data Source URL https://phytozome.jgi.doe.gov/pz/portal.html
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:79.6%[S:78.2%,D:1.4%],F:5.5%,M:14.9%,n:1614 BUSCO Gene (pep/cds) C:87.4%[S:68.8%,D:18.6%],F:1.2%,M:11.4%,n:1614

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