Sequence Name:WHU-updated v1
Assembly Name | WHU-updated v1 | Biological Sample | cv. Shixiya1, SXY1 |
Number of Sequences | 1,269 | Number of Chromosomes | 2n = 4x = 52 |
Total Length (bp) | 1,636,985,834 | N50 Length (bp) | 118,841,821 |
Number of Genes | 43,278 | Number of Genes Source File | Garboreum_Shixiya1_WHUv3.0rc.gene.pep.standard.fa |
Number of Genes Annotated by Hayai-annotation | 43,278 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | Illumina, PacBio, Hi-C | Read Depth | 177x |
Assembly Method | Falcon v.0.4, Polish, Pilon v.1.20, Pbjelly, Quiver | Estimated Genome Size (Mb) | NA |
Sequencing Method Comments | NA | Comments | NA |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Yu-Xian Zhu (Peking University), Shuxun Yu (nstitute of Cotton Research of the Chinese Academy of Agricultural Sciences), Jun Wang (BGI-Shenzhen). | Data Source | COTTON GEN |
DOI/PMID | 10.1038/s41588-020-0607-4 | Data Source URL | https://www.cottongen.org/ |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:99.0%[S:92.4%,D:6.6%],F:0.4%,M:0.6%,n:1614 | BUSCO Gene (pep/cds) | C:98.2%[S:91.2%,D:7.0%],F:0.7%,M:1.1%,n:1614 |