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アセンブル , シーケンス , Assemble , Sequence , Gossypium arboreum , Asian cotton , ワタ (arboreum種), キダチワタ

Gossypium arboreum

Genome Assembly ID:t29729.G002

Sequence Name:WHU-updated v1

Details of the Assembled Genome Sequences

Assembly Name WHU-updated v1 Biological Sample cv. Shixiya1, SXY1
Number of Sequences 1,269 Number of Chromosomes 2n = 4x = 52
Total Length (bp) 1,636,985,834 N50 Length (bp) 118,841,821
Number of Genes 43,278 Number of Genes Source File Garboreum_Shixiya1_WHUv3.0rc.gene.pep.standard.fa
Number of Genes Annotated by Hayai-annotation 43,278 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, PacBio, Hi-C Read Depth 177x
Assembly Method Falcon v.0.4, Polish, Pilon v.1.20, Pbjelly, Quiver Estimated Genome Size (Mb) NA
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Yu-Xian Zhu (Peking University), Shuxun Yu (nstitute of Cotton Research of the Chinese Academy of Agricultural Sciences), Jun Wang (BGI-Shenzhen). Data Source COTTON GEN
DOI/PMID 10.1038/s41588-020-0607-4 Data Source URL https://www.cottongen.org/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:99.0%[S:92.4%,D:6.6%],F:0.4%,M:0.6%,n:1614 BUSCO Gene (pep/cds) C:98.2%[S:91.2%,D:7.0%],F:0.7%,M:1.1%,n:1614

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