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アセンブル , シーケンス , Assemble , Sequence , Chiococca alba , snowberry , キオコッカ・アルバ, スノーベリー

Chiococca alba

Genome Assembly ID:t28527.G001

Sequence Name:snowberry

Details of the Assembled Genome Sequences

Assembly Name snowberry Biological Sample wild accession
Number of Sequences 3,518 Number of Chromosomes 2n = 2x = 12-14
Total Length (bp) 557,689,917 N50 Length (bp) 2,354,703
Number of Genes 43,217 Number of Genes Source File snowberry_final_asm.hc_models.pep.fasta.gz
Number of Genes Annotated by Hayai-annotation 0 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, 10x Genomics Read Depth 86x(paired-end), 30x(mate-pair), 70x(10x genomics raw), 48x(10x genomics effective coverage)
Assembly Method NextClip (v1.3.1) for ALLPATHS-LG, Supernova (v2.0.0) for 10x genomics Estimated Genome Size (Mb) 567(flow cytometry), from480 to 537(k-mer)
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author C Robin Buell (Michigan State University) Data Source DRYAD
DOI/PMID 10.1093/dnares/dsaa013 Data Source URL https://datadryad.org
BUSCO Version BUSCO Dataset
BUSCO Genome BUSCO Gene (pep/cds)

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