Plant GARDEN How To ▶︎

JA

EN

アセンブル , シーケンス , Assemble , Sequence , Chiococca alba , snowberry , キオコッカ・アルバ, スノーベリー

Chiococca alba

Genome Assembly ID:t28527.G001

Sequence Name:snowberry

Details of the Assembled Genome Sequences

Assembly Name snowberry Biological Sample wild accession
Number of Sequences 3,518 Number of Chromosomes 2n = 2x = 12-14
Total Length (bp) 557,689,917 N50 Length (bp) 2,354,703
Number of Genes 43,217 Number of Genes Source File snowberry_final_asm.hc_models.pep.fasta.gz
Number of Genes Annotated by Hayai-annotation 0 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, 10x Genomics Read Depth 86x(paired-end), 30x(mate-pair), 70x(10x genomics raw), 48x(10x genomics effective coverage)
Assembly Method NextClip (v1.3.1) for ALLPATHS-LG, Supernova (v2.0.0) for 10x genomics Estimated Genome Size (Mb) 567(flow cytometry), from480 to 537(k-mer)
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author C Robin Buell (Michigan State University) Data Source DRYAD
DOI/PMID 10.1093/dnares/dsaa013 Data Source URL https://datadryad.org
BUSCO Version 5.8.2 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:97.2%[S:92.2%,D:5.0%],F:1.5%,M:1.2%,n:1614 BUSCO Gene (pep/cds) C:95.7%[S:57.7%,D:37.9%],F:1.7%,M:2.7%,n:1614

Search Genes

Gene data has not been registered.

Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand
fasta
format