Plant GARDEN How To ▶︎

JA

EN

アセンブル , シーケンス , Assemble , Sequence , Vitis labruscana x Vitis vinifera , Hybrid grape , ブドウ欧米雑種

Vitis labruscana x Vitis vinifera

Genome Assembly ID:t2599122.G002

Sequence Name:VSMuph_r1.0

Details of the Assembled Genome Sequences

Assembly Name VSMuph_r1.0 Biological Sample cv. Shine Muscat
Number of Sequences 8,696 Number of Chromosomes 2n = 2x = 38
Total Length (bp) 490,143,216 N50 Length (bp) 13,153,933
Number of Genes 26,199 Number of Genes Source File VSMuph_r1.0.transcript1.fasta
Number of Genes Annotated by Hayai-annotation 0 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina Read Depth 260x
Assembly Method DenovoMAGIC3 Estimated Genome Size (Mb) 493
Sequencing Method Comments NA Comments Unphased sequence representing 'haploid' genome
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Kenta Shirasawa (Kazusa DNA Research Institute) Data Source Plant GARDEN
DOI/PMID 10.1101/730762 Data Source URL https://plantgarden.jp/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:96.5%[S:94.7%,D:1.8%],F:1.5%,M:2.0%,n:1614 BUSCO Gene (pep/cds)

Search Genes

Gene data has not been registered.

Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand
fasta
format