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アセンブル , シーケンス , Assemble , Sequence , Hydrangea macrophylla , Hydrangea , アジサイ

Hydrangea macrophylla

Genome Assembly ID:t23110.G003

Sequence Name:HMA_r1.2_1

Details of the Assembled Genome Sequences

Assembly Name HMA_r1.2_1 Biological Sample Aogashima
Number of Sequences 3,780 Number of Chromosomes 2n = 2x = 36
Total Length (bp) 2,227,567,818 N50 Length (bp) 1,440,438
Number of Genes 32,222 Number of Genes Source File HMA_r1.2_1.protein.fasta
Number of Genes Annotated by Hayai-annotation 32,222 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio and Illumina Read Depth 49x
Assembly Method FALCON_Unzip and FALCON_Phase Estimated Genome Size (Mb) 2,164
Sequencing Method Comments HiC data by Illumina Comments Haplotype phase 1
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Nashima K (Nihon University) Data Source Plant GARDEN
DOI/PMID 10.1101/2020.06.14.151431 Data Source URL https://plantgarden.jp/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:63.1%[S:60.0%,D:3.1%],F:2.4%,M:34.5%,n:1614 BUSCO Gene (pep/cds) C:78.5%[S:74.7%,D:3.8%],F:10.2%,M:11.3%,n:1614

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