Sequence Name:HMA_r1.2_1
Assembly Name | HMA_r1.2_1 | Biological Sample | Aogashima |
Number of Sequences | 3,780 | Number of Chromosomes | 2n = 2x = 36 |
Total Length (bp) | 2,227,567,818 | N50 Length (bp) | 1,440,438 |
Number of Genes | 32,222 | Number of Genes Source File | HMA_r1.2_1.protein.fasta |
Number of Genes Annotated by Hayai-annotation | 32,222 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | PacBio and Illumina | Read Depth | 49x |
Assembly Method | FALCON_Unzip and FALCON_Phase | Estimated Genome Size (Mb) | 2,164 |
Sequencing Method Comments | HiC data by Illumina | Comments | Haplotype phase 1 |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Nashima K (Nihon University) | Data Source | Plant GARDEN |
DOI/PMID | 10.1101/2020.06.14.151431 | Data Source URL | https://plantgarden.jp/ |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:63.1%[S:60.0%,D:3.1%],F:2.4%,M:34.5%,n:1614 | BUSCO Gene (pep/cds) | C:78.5%[S:74.7%,D:3.8%],F:10.2%,M:11.3%,n:1614 |