Sequence Name:HMA_r1.2_0
Assembly Name | HMA_r1.2_0 | Biological Sample | Aogashima |
Number of Sequences | 3,780 | Number of Chromosomes | 2n = 2x = 36 |
Total Length (bp) | 2,256,097,326 | N50 Length (bp) | 1,478,677 |
Number of Genes | 32,205 | Number of Genes Source File | HMA_r1.2_0.protein.fasta |
Number of Genes Annotated by Hayai-annotation | 32,205 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | PacBio and Illumina | Read Depth | 49x |
Assembly Method | FALCON_Unzip and FALCON_Phase | Estimated Genome Size (Mb) | 2,164 |
Sequencing Method Comments | HiC data by Illumina | Comments | Haplotype phase 0 |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Nashima K (Nihon University) | Data Source | Plant GARDEN |
DOI/PMID | 10.1101/2020.06.14.151431 | Data Source URL | https://plantgarden.jp/ |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:61.5%[S:58.4%,D:3.1%],F:2.6%,M:35.9%,n:1614 | BUSCO Gene (pep/cds) | C:73.9%[S:70.0%,D:3.9%],F:10.9%,M:15.2%,n:1614 |