Plant GARDEN How To ▶︎

JA

EN

アセンブル , シーケンス , Assemble , Sequence , Hydrangea macrophylla , Hydrangea , アジサイ

Hydrangea macrophylla

Genome Assembly ID:t23110.G002

Sequence Name:HMA_r1.2_0

Details of the Assembled Genome Sequences

Assembly Name HMA_r1.2_0 Biological Sample Aogashima
Number of Sequences 3,780 Number of Chromosomes 2n = 2x = 36
Total Length (bp) 2,256,097,326 N50 Length (bp) 1,478,677
Number of Genes 32,205 Number of Genes Source File HMA_r1.2_0.protein.fasta
Number of Genes Annotated by Hayai-annotation 32,205 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio and Illumina Read Depth 49x
Assembly Method FALCON_Unzip and FALCON_Phase Estimated Genome Size (Mb) 2,164
Sequencing Method Comments HiC data by Illumina Comments Haplotype phase 0
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Nashima K (Nihon University) Data Source Plant GARDEN
DOI/PMID 10.1101/2020.06.14.151431 Data Source URL https://plantgarden.jp/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:61.5%[S:58.4%,D:3.1%],F:2.6%,M:35.9%,n:1614 BUSCO Gene (pep/cds) C:73.9%[S:70.0%,D:3.9%],F:10.9%,M:15.2%,n:1614

Search Genes

Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand
fasta
format