Sequence Name:HMA_r0.1
Assembly Name | HMA_r0.1 | Biological Sample | Aogashima |
Number of Sequences | 613,685 | Number of Chromosomes | 2n = 2x = 36 |
Total Length (bp) | 1,714,141,309 | N50 Length (bp) | 9,127 |
Number of Genes | 371,923 | Number of Genes Source File | HMA_r0.1.augustus.gff3.pep.best.fa |
Number of Genes Annotated by Hayai-annotation | 371,923 | Hayai-Annotation Version | zen_v2.0 |
Sequencing Method | Illumina | Read Depth | 144x |
Assembly Method | Platanus | Estimated Genome Size (Mb) | 2,164 |
Sequencing Method Comments | NA | Comments | NA |
Copyright information for the article | In preparation | Copyright information for the data / database | In preparation |
Corresponding author | Nashima K (Nihon University) | Data Source | Plant GARDEN |
DOI/PMID | 10.1101/2020.06.14.151431 | Data Source URL | https://plantgarden.jp/ |
BUSCO Version | 5.1.0 | BUSCO Dataset | embryophyta_odb10 |
BUSCO Genome | C:66.5%[S:63.9%,D:2.6%],F:21.9%,M:11.6%,n:1614 | BUSCO Gene (pep/cds) | C:46.9%[S:44.7%,D:2.2%],F:28.8%,M:24.3%,n:1614 |