Plant GARDEN How To ▶︎

JA

EN

アセンブル , シーケンス , Assemble , Sequence , Beta vulgaris subsp. vulgaris , Beet, Sugar beet. (ssp. Vulgaris) , テンサイ, フダンソウ, ビート (Vulgaris 亜種)

Beta vulgaris

Genome Assembly ID:t161934.G001

Sequence Name:RefBeet-1.2.2

Details of the Assembled Genome Sequences

Assembly Name RefBeet-1.2.2 Biological Sample subsp. vulgaris, KWS2320
Number of Sequences 40,245 Number of Chromosomes 2n = 2x = 18
Total Length (bp) 566,181,630 N50 Length (bp) 34,941,034
Number of Genes 28,721 Number of Genes Source File Beta_vulgaris.RefBeet-1.2.2.pep.all.fa
Number of Genes Annotated by Hayai-annotation 28,721 Hayai-Annotation Version zen_v2.0
Sequencing Method Illumina, 454, Sanger Read Depth 30x
Assembly Method Newbler v. 2.6 Estimated Genome Size (Mb) 731
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Heinz Himmelbauer (Max Planck Institute for Molecular Genetics), Bernd Weisshaar (Bielefeld University) Data Source Ensembl
DOI/PMID 10.1038/nature12817:10.1186/s13059-015-0729-7 Data Source URL http://plants.ensembl.org/index.html
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.7%[S:97.8%,D:0.9%],F:0.5%,M:0.8%,n:1614 BUSCO Gene (pep/cds) C:97.6%[S:88.4%,D:9.2%],F:1.2%,M:1.2%,n:1614

Search Genes

Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand
fasta
format