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アセンブル , シーケンス , Assemble , Sequence , Ophiorrhiza pumila , Ophiorrhiza pumila , チャボイナモリ

Ophiorrhiza pumila

Genome Assembly ID:t157934.G001

Sequence Name:Opu_r1.4

Details of the Assembled Genome Sequences

Assembly Name Opu_r1.4 Biological Sample NA
Number of Sequences 13 Number of Chromosomes 2n = 2x = 22
Total Length (bp) 440,319,191 N50 Length (bp) 40,565,736
Number of Genes 32,389 Number of Genes Source File Opu_r1.4_pep.fa
Number of Genes Annotated by Hayai-annotation 32,389 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio, Illumina, Bionano, Hi-C Read Depth NA
Assembly Method Canu v.1.7, Falcon-unzip v.1.3 Estimated Genome Size (Mb) 420
Sequencing Method Comments NA Comments NA
Copyright information for the article In preparation Copyright information for the data / database In preparation
Corresponding author Amit Rai (Chiba University), Mami Yamazaki (ditto) Data Source Ophiorrhiza pumila Genome DataBase
DOI/PMID 10.1038/s41467-020-20508-2 Data Source URL http://pumila.kazusa.or.jp/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.0%[S:95.5%,D:2.5%],F:0.8%,M:1.2%,n:1614 BUSCO Gene (pep/cds) C:89.2%[S:86.6%,D:2.6%],F:3.7%,M:7.1%,n:1614

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