Plant GARDEN How To ▶︎

JA

EN

アセンブル , シーケンス , Assemble , Sequence , Chrysanthemum seticuspe , Wild chrysanthemum (seticuspe) , キクタニギク

Chrysanthemum seticuspe

Genome Assembly ID:t1111766.G002

Sequence Name:Gojo-0 v1

Details of the Assembled Genome Sequences

Sequence Name Gojo-0 v1 Biological Sample Gojo-0
Number of Sequences 8,493 Number of Chromosomes 2n = 2x = 18
Total Length (bp) 3,045,060,000 N50 Length (bp) 347,131,000
Number of Genes 74,259 Number of Genes Source File CsGojo-0_v1_HC.pep
Number of Genes Annotated by Hayai-annotation 74,259 Hayai-Annotation Version zen_v2.0
Sequencing Method PacBio, Hi-C Read Depth 107x
Assembly Method Platanus-allee v2.2.2, Flye, HiRise Estimated Genome Size (Mb) 3,150
Sequencing Method Comments Comments
DOI/PMID Corresponding author Mmakoto Kusaba (Hiroshima University)
Data Source Plant GARDEN Data Source URL https://plantgarden.jp/
BUSCO Version 5.1.0 BUSCO Dataset embryophyta_odb10
BUSCO Genome C:98.6%[S:91.5%,D:7.1%],F:0.7%,M:0.7%,n:1614 BUSCO Gene (pep/cds) C:93.6%[S:86.4%,D:7.2%],F:2.1%,M:4.3%,n:1614

Search Genes

Cut-Out Genome Sequences

Chromosome /
Scaffolds
Start Position
End Position
Complementary Strand
fasta
format