t3641.T000001 early flowering (EF) 6 NA QTL analysis (Catongo x Pound 12) x Catongo BC1 AS06 NA NA 0 0 NA 0 0 1.5 10.1007/BF00225747 NA NA t3641.T000002 early flowering (EF) 6 NA QTL analysis (Catongo x Pound 12) x Catongo BC1 B522 NA NA 0 0 NA 0 0 2.6 10.1007/BF00225747 NA NA t3641.T000003 early flowering (EF) 6 NA QTL analysis (Catongo x Pound 12) x Catongo BC1 U516 NA NA 0 0 NA 0 0 2.7 10.1007/BF00225747 NA NA t3641.T000004 early flowering (EF) 6 NA QTL analysis (Catongo x Pound 12) x Catongo BC1 AF07 NA NA 0 0 NA 0 0 1.9 10.1007/BF00225747 NA NA t3641.T000005 jorquette height (JH) 6 NA QTL analysis (Catongo x Pound 12) x Catongo BC1 A541 NA NA 0 0 NA 0 0 not significant 10.1007/BF00225747 NA NA t3641.T000006 ovule number (OV) 6 NA QTL analysis (Catongo x Pound 12) x Catongo BC1 CCG1135 NA NA 0 0 NA 0 0 3.1 10.1007/BF00225747 NA NA t3641.T000007 ovule number (OV) 6 NA QTL analysis (Catongo x Pound 12) x Catongo BC1 P19 NA NA 0 0 NA 0 0 3.3 10.1007/BF00225747 NA NA t3641.T000008 QTL code 1 6 DL10, resistance to Phytophthora palmivora QTL analysis (Catongo x Pound 12) x Catongo BC1 CCG1098 NA NA 0 0 NA 0 0 2.6 10.1023/A:1003994212394 NA NA t3641.T000009 QTL code 2 6 DL10, resistance to Phytophthora palmivora QTL analysis (Catongo x Pound 12) x Catongo BC1 CCG1135 NA NA 0 0 NA 0 0 3.4 10.1023/A:1003994212394 NA NA t3641.T000010 QTL code 4 6 DL10, resistance to Phytophthora palmivora QTL analysis (Catongo x Pound 12) x Catongo BC1 CCG1300 NA NA 0 0 NA 0 0 3.4 10.1023/A:1003994212394 NA NA t3641.T000011 QTL code 6 6 DL5, resistance to Phytophthora palmivora QTL analysis (Catongo x Pound 12) x Catongo BC1 AJ02 NA NA 0 0 NA 0 0 3.7 10.1023/A:1003994212394 NA NA t3641.T000012 trunk diameter (TD) 6 NA QTL analysis (Catongo x Pound 12) x Catongo BC1 CCG1082 NA NA 0 0 NA 0 0 2.1 10.1007/BF00225747 NA NA t3641.T000013 trunk diameter (TD) 6 NA QTL analysis (Catongo x Pound 12) x Catongo BC1 CCG1424 NA NA 0 0 NA 0 0 1.8 10.1007/BF00225747 NA NA t3641.T000014 Jorquette height (JH) 6 NA QTL analysis Catongo x Pound 12 F1 CCG1576 NA NA 0 0 NA 0 0 10.1023/A:1003892217582 NA NA t3641.T000015 Mean yield over 15 Years (YM) 6 NA QTL analysis Catongo x Pound 12 F1 AUTOC NA NA 0 0 NA 0 0 10.1023/A:1003892217582 NA NA t3641.T000016 Mean yield over 15 Years (YM) 6 NA QTL analysis Catongo x Pound 12 F1 CCC2 NA NA 0 0 NA 0 0 10.1023/A:1003892217582 NA NA t3641.T000017 Ovule number (ON) 6 NA QTL analysis Catongo x Pound 12 F1 AM10A NA NA 0 0 NA 0 0 10.1023/A:1003892217582 NA NA t3641.T000018 Pod index (PI) 6 NA QTL analysis Catongo x Pound 12 F1 CCG 1135 NA NA 0 0 NA 0 0 10.1023/A:1003892217582 NA NA t3641.T000019 Pod index (PI) 6 NA QTL analysis Catongo x Pound 12 F1 AFACCTGE NA NA 0 0 NA 0 0 10.1023/A:1003892217582 NA NA t3641.T000020 Pod index (PI) 6 NA QTL analysis Catongo x Pound 12 F1 CCG899 NA NA 0 0 NA 0 0 10.1023/A:1003892217582 NA NA t3641.T000021 QTL code 2 6 DL5, resistance to Phytophthora palmivora QTL analysis Catongo x Pound 12 F1 CCG1135 NA NA 0 0 NA 0 0 5.4 10.1023/A:1003994212394 NA NA t3641.T000022 QTL code 3 6 DL5, resistance to Phytophthora palmivora QTL analysis Catongo x Pound 12 F1 CCG1108 NA NA 0 0 NA 0 0 2.6 10.1023/A:1003994212394 NA NA t3641.T000023 QTL code 5 6 DL10, resistance to Phytophthora palmivora QTL analysis Catongo x Pound 12 F1 CCG899 NA NA 0 0 NA 0 0 2.5 10.1023/A:1003994212394 NA NA t3641.T000024 Seed index (SI) 6 NA QTL analysis Catongo x Pound 12 F1 CCG 1135 NA NA 0 0 NA 0 0 10.1023/A:1003892217582 NA NA t3641.T000025 Seed index (SI) 6 NA QTL analysis Catongo x Pound 12 F1 CCC1102 NA NA 0 0 NA 0 0 10.1023/A:1003892217582 NA NA t3641.T000026 Seed index (SI) 6 NA QTL analysis Catongo x Pound 12 F1 CCG1238 NA NA 0 0 NA 0 0 10.1023/A:1003892217582 NA NA t3641.T000027 Seed per Pod (SP) 6 NA QTL analysis Catongo x Pound 12 F1 CCG1102 NA NA 0 0 NA 0 0 10.1023/A:1003892217582 NA NA t3641.T000028 Seed per Pod (SP) 6 NA QTL analysis Catongo x Pound 12 F1 AS06F NA NA 0 0 NA 0 0 10.1023/A:1003892217582 NA NA t3641.T000029 Trunk diameter (TD) 6 NA QTL analysis Catongo x Pound 12 F1 CCG1622 NA NA 0 0 NA 0 0 10.1023/A:1003892217582 NA NA t3641.T000030 Trunk diameter (TD) 6 NA QTL analysis Catongo x Pound 12 F1 cTcCIR33 NA NA 0 0 NA 0 0 10.1023/A:1003892217582 NA NA t3641.T000031 Trunk diameter (TD) 6 NA QTL analysis Catongo x Pound 12 F1 CCG1238 NA NA 0 0 NA 0 0 10.1023/A:1003892217582 NA NA t3641.T000032 Ave_gr_rt1 6 average growth rate of trunk diameter QTL analysis Pound 7 x UF 273 F1 mTcCIR168, mTcCIR222 NA NA 0 0 NA 0 0 9.6 10.2135/cropsci2006.11.0753 NA NA t3641.T000033 Fros_Pod EXT1 6 frosty pod external resistance 1 QTL analysis Pound 7 x UF 273 F1 mTcCIR240 NA NA 0 0 mTcCIR100 NA 0 0 3.9 10.2135/cropsci2006.11.0753 NA NA t3641.T000034 Fros_Pod EXT2 6 frosty pod external resistance 2 QTL analysis Pound 7 x UF 273 F1 mTcCIR55 NA NA 0 0 mTcCIR46 NA 0 0 5.1 10.2135/cropsci2006.11.0753 NA NA t3641.T000035 Fros_Pod EXT3 6 frosty pod external resistance 3 QTL analysis Pound 7 x UF 273 F1 mTcCIR236 NA NA 0 0 mTcCIR26 NA 0 0 5.2 10.2135/cropsci2006.11.0753 NA NA t3641.T000036 Fros_Pod INT1 6 frosty pod internal resistance 1 QTL analysis Pound 7 x UF 273 F1 mTcCIR240 NA NA 0 0 mTcCIR100 NA 0 0 7 10.2135/cropsci2006.11.0753 NA NA t3641.T000037 Fros_Pod INT3 6 frosty pod internal resistance 3 QTL analysis Pound 7 x UF 273 F1 mTcCIR26 NA NA 0 0 NA 0 0 7.2 10.2135/cropsci2006.11.0753 NA NA t3641.T000038 Jor_1 6 formation of first jorquette 1 QTL analysis Pound 7 x UF 273 F1 mTcCIR158 NA NA 0 0 mTcCIR18 NA 0 0 10.7 10.2135/cropsci2006.11.0753 NA NA t3641.T000039 Jor_2 6 formation of first jorquette 2 QTL analysis Pound 7 x UF 273 F1 mTcCIR9 NA NA 0 0 SHRS2 NA 0 0 4.5 10.2135/cropsci2006.11.0753 NA NA t3641.T000040 Phytoph1 6 black pod resistance 1 QTL analysis Pound 7 x UF 273 F1 mTcCIR168 NA NA 0 0 NA 0 0 6.7 10.2135/cropsci2006.11.0753 NA NA t3641.T000041 Phytoph2 6 black pod resistance 2 QTL analysis Pound 7 x UF 273 F1 mTcCIR200 NA NA 0 0 mTcCIR225 NA 0 0 6.1 10.2135/cropsci2006.11.0753 NA NA t3641.T000042 Phytoph3 6 black pod resistance 3 QTL analysis Pound 7 x UF 273 F1 mTcCIR61 NA NA 0 0 mTcCIR37 NA 0 0 14.6 10.2135/cropsci2006.11.0753 NA NA t3641.T000043 Pod_Color 6 pod color QTL analysis Pound 7 x UF 273 F1 mTcCIR158 NA NA 0 0 mTcCIR107 NA 0 0 253.08 10.2135/cropsci2006.11.0753 NA NA t3641.T000044 resistance to Ceratocystis wilt 6 LXD-LG3, length of the xylem discoloration (LXD) QTL analysis Sca 6 x ICS 1 F2 mTcCIR135 NA NA 0 0 NA 0 0 81.33 2.73 10.1007/s11032-012-9739-2 NA NA t3641.T000045 Crinipellis perniciosa resistance (witches' broom resistance) 6 NA QTL analysis TSH-516 F2 mTcCIR35 NA NA 0 0 NA 0 0 23 10.1007/s10681-005-9070-7 NA NA t3641.T000046 TCM_020057 1 Frosty Pod disease GWAS Panel of 148 clones NA 4 26415167 0 4 26437666 0 10.3389/fpls.2017.01905 NA NA t3641.T000047 TCM_020262 1 Frosty Pod disease GWAS Panel of 148 clones NA 4 27544908 0 4 27549168 0 10.3389/fpls.2017.01905 NA NA t3641.T000048 TCM_025566 1 Frosty Pod disease GWAS Panel of 148 clones NA 5 33500077 0 5 33504228 0 10.3389/fpls.2017.01905 NA NA t3641.T000049 TCM_025986 1 Frosty Pod disease GWAS Panel of 148 clones NA 5 35879522 0 5 35883596 0 10.3389/fpls.2017.01905 NA NA t3641.T000050 TCM_027463 1 Frosty Pod disease GWAS Panel of 148 clones NA 6 4238338 0 6 4241401 0 10.3389/fpls.2017.01905 NA NA t3641.T000051 TCM_045155 1 Frosty Pod disease GWAS Panel of 148 clones NA 10 22681774 0 10 22690630 0 10.3389/fpls.2017.01905 NA NA t3641.T000052 2 Self-incompatibility GWAS 570 individuals 3673000|F|0--37:G>A NA CH4 189447 0 0 0 9.17 e–11 10.1093/jxb/erx293 NA NA t3641.T000053 2 Self-incompatibility GWAS 570 individuals 3228529|F|0--41:C>G NA CH4 274083 0 0 0 3.16 e–5 10.1093/jxb/erx293 NA NA t3641.T000054 2 Self-incompatibility GWAS 570 individuals 3253696|F|0--14:T>C NA CH4 283464 0 0 0 4.69 e–6 10.1093/jxb/erx293 NA NA t3641.T000055 2 Self-incompatibility GWAS 570 individuals 3228956|F|0--38:G>A NA CH4 291211 0 0 0 4.16 e–6 10.1093/jxb/erx293 NA NA t3641.T000056 2 Self-incompatibility GWAS 570 individuals 3226653|F|0--38:G>T NA CH4 325666 0 0 0 1.29 e–11 10.1093/jxb/erx293 NA NA t3641.T000057 2 Self-incompatibility GWAS 570 individuals 3251567|F|0--25:T>C NA CH4 427186 0 0 0 1.4 e–7 10.1093/jxb/erx293 NA NA t3641.T000058 2 Self-incompatibility GWAS 570 individuals 3251143|F|0--28:A>G NA CH4 461808 0 0 0 6.29 e–6 10.1093/jxb/erx293 NA NA t3641.T000059 2 Self-incompatibility GWAS 570 individuals 3253828|F|0--22:T>G NA CH4 515636 0 0 0 5.06 e–6 10.1093/jxb/erx293 NA NA t3641.T000060 2 Self-incompatibility GWAS 570 individuals 3667093|F|0--48:T>C NA CH4 558838 0 0 0 2.53 e–6 10.1093/jxb/erx293 NA NA t3641.T000061 2 Self-incompatibility GWAS 570 individuals 3250663|F|0--32:G>C NA CH4 581276 0 0 0 1.46 e–5 10.1093/jxb/erx293 NA NA t3641.T000062 2 Self-incompatibility GWAS 570 individuals 3223093|F|0--65:T>A NA CH4 1328172 0 0 0 1.73 e–5 10.1093/jxb/erx293 NA NA t3641.T000063 2 Self-incompatibility GWAS 570 individuals 3673000|F|0--37:G>A NA CH4 189447 0 0 0 3.22 e–9 10.1093/jxb/erx293 NA NA t3641.T000064 2 Self-incompatibility GWAS 570 individuals 3253696|F|0--14:T>C NA CH4 283464 0 0 0 5.28 e–8 10.1093/jxb/erx293 NA NA t3641.T000065 2 Self-incompatibility GWAS 570 individuals 3228956|F|0--38:G>A NA CH4 291211 0 0 0 1.07 e–7 10.1093/jxb/erx293 NA NA t3641.T000066 2 Self-incompatibility GWAS 570 individuals 3226653|F|0--38:G>T NA CH4 325666 0 0 0 3.12 e–14 10.1093/jxb/erx293 NA NA t3641.T000067 2 Self-incompatibility GWAS 570 individuals 3224400|F|0--35:A>G NA CH4 432831 0 0 0 4.4 e–7 10.1093/jxb/erx293 NA NA t3641.T000068 2 Self-incompatibility GWAS 570 individuals 3251143|F|0--28:A>G NA CH4 461808 0 0 0 7.15 e–7 10.1093/jxb/erx293 NA NA t3641.T000069 2 Self-incompatibility GWAS 570 individuals 3253828|F|0--22:T>G NA CH4 515636 0 0 0 1.01 e–6 10.1093/jxb/erx293 NA NA t3641.T000070 2 Self-incompatibility GWAS 570 individuals 3667093|F|0--48:T>C NA CH4 558838 0 0 0 1.58 e–6 10.1093/jxb/erx293 NA NA t3641.T000071 1 Witches’ broom disease resistance Interval mapping TSH 1188 × CCN 51 Tcm003s33466269 NA III 82 0 0 0 3.739 10.1186/s12864-016-2415-x NA NA t3641.T000072 1 Witches’ broom disease resistance Interval mapping TSH 1188 × CCN 51 Tcm004s00110232 NA IV 1 0 0 0 6.031 10.1186/s12864-016-2415-x NA NA t3641.T000073 1 Witches’ broom disease resistance Interval mapping TSH 1188 × CCN 51 Tcm006s19715703 NA VI 31 0 0 0 3.679 10.1186/s12864-016-2415-x NA NA t3641.T000074 1 Witches’ broom disease resistance Interval mapping TSH 1188 × CCN 51 Tcm006s25375496 NA VI 62 0 0 0 2.318 10.1186/s12864-016-2415-x NA NA t3641.T000075 1 Witches’ broom disease resistance Interval mapping TSH 1188 × CCN 51 Tcm007s10302466 NA VII 48 0 0 0 8.306 10.1186/s12864-016-2415-x NA NA t3641.T000076 1 Witches’ broom disease resistance Interval mapping TSH 1188 × CCN 51 Tcm009s02031341 NA IX 14 0 0 0 3.557 10.1186/s12864-016-2415-x NA NA t3641.T000077 1 Witches’ broom disease resistance Interval mapping TSH 1188 × CCN 51 Tcm009s08066239 NA IX 44 0 0 0 11.24 10.1186/s12864-016-2415-x NA NA t3641.T000078 3 Number of filled seeds Association mapping 483 accessions TcSNP1370 NA 0 0 0 0 23.4 10.1007/s00425-016-2582-7 NA NA t3641.T000079 3 Number of filled seeds Association mapping 483 accessions mTcCIR66 NA 0 0 0 0 24.8 10.1007/s00425-016-2582-7 NA NA t3641.T000080 3 Number of filled seeds Association mapping 483 accessions mTcCIR126 NA 0 0 0 0 9.7 10.1007/s00425-016-2582-7 NA NA t3641.T000081 3 Number of filled seeds Association mapping 483 accessions mTcCIR8 NA 0 0 0 0 48.5 10.1007/s00425-016-2582-7 NA NA t3641.T000082 3 Number of filled seeds Association mapping 483 accessions mTcCIR212 NA 0 0 0 0 61.3 10.1007/s00425-016-2582-7 NA NA t3641.T000083 3 Number of filled seeds Association mapping 483 accessions TcSNP697 NA 0 0 0 0 65.1 10.1007/s00425-016-2582-7 NA NA t3641.T000084 3 Number of filled seeds Association mapping 483 accessions TcSNP368 NA 0 0 0 0 77.1 10.1007/s00425-016-2582-7 NA NA t3641.T000085 1 Detached fruit response to spray inoculations with Phytophthora palmivora Association mapping 483 accessions mTcCIR280 NA 0 0 0 0 42.3 10.1007/s00425-016-2582-7 NA NA t3641.T000086 1 Log vegetative witches’ broom per tree girth Association mapping 483 accessions TcSNP720 NA 0 0 0 0 77.2 10.1007/s00425-016-2582-7 NA NA t3641.T000087 1 Log vegetative witches’ broom per tree girth Association mapping 483 accessions mTcCIR91 NA 0 0 0 0 38.9 10.1007/s00425-016-2582-7 NA NA t3641.T000088 1 Log vegetative witches’ broom per year Association mapping 483 accessions TcSNP1230 NA 0 0 0 0 37.9 10.1007/s00425-016-2582-7 NA NA t3641.T000089 1 Log vegetative witches’ broom per year Association mapping 483 accessions mTcCIR91 NA 0 0 0 0 38.9 10.1007/s00425-016-2582-7 NA NA t3641.T000090 1 Log vegetative witches’ broom per tree girth Association mapping 483 accessions TcSNP375 NA 0 0 0 0 33.2 10.1007/s00425-016-2582-7 NA NA t3641.T000091 1 Log vegetative witches’ broom per year Association mapping 483 accessions TcSNP1374 NA 0 0 0 0 39.4 10.1007/s00425-016-2582-7 NA NA t3641.T000092 1 Log total witches’ broom per tree girth Association mapping 483 accessions mTcCIR183 NA 0 0 0 0 24.1 10.1007/s00425-016-2582-7 NA NA t3641.T000093 1 Log total witches’ broom per tree girth Association mapping 483 accessions mTcCIR91 NA 0 0 0 0 38.9 10.1007/s00425-016-2582-7 NA NA t3641.T000094 1 Log total witches’ broom per year Association mapping 483 accessions TcSNP1230 NA 0 0 0 0 37.9 10.1007/s00425-016-2582-7 NA NA t3641.T000095 3 Seed number GWAS 421 accessions TcSNP1335 NA 7 9085336 0 0 0 1.15e-14 10.1371/journal.pone.0260907 NA NA t3641.T000096 3 Fruit shape orbicular GWAS 421 accessions TcSNP1353 NA 3 34216420 0 0 0 6.73e-09 10.1371/journal.pone.0260907 NA NA t3641.T000097 3 Fruit shape oblate GWAS 421 accessions TcSNP1353 NA 3 34216420 0 0 0 6.73e-09 10.1371/journal.pone.0260907 NA NA t3641.T000098 3 Mature fruit anthocyanin conc GWAS 421 accessions TcSNP401 NA 4 20485872 0 0 0 4.78e-06 10.1371/journal.pone.0260907 NA NA t3641.T000099 3 Fruit shape orbicular GWAS 421 accessions TcSNP1477 NA 3 17127233 0 0 0 8.2e-06 10.1371/journal.pone.0260907 NA NA t3641.T000100 3 Fruit shape oblate GWAS 421 accessions TcSNP1477 NA 3 17127233 0 0 0 8.2e-06 10.1371/journal.pone.0260907 NA NA t3641.T000101 3 Seed length to width GWAS 421 accessions TcSNP897 NA 3 23362296 0 0 0 8.57e-06 10.1371/journal.pone.0260907 NA NA t3641.T000102 3 Log seed number GWAS 421 accessions TcSNP785 NA 1 31785158 0 0 0 2.38e-05 10.1371/journal.pone.0260907 NA NA t3641.T000103 3 Log seed length GWAS 421 accessions TcSNP344 NA 4 8445308 0 0 0 2.88e-05 10.1371/journal.pone.0260907 NA NA t3641.T000104 3 Seed length to width GWAS 421 accessions TcSNP733 NA 5 2070839 0 0 0 3.05e-05 10.1371/journal.pone.0260907 NA NA t3641.T000105 3 Log fruit length GWAS 421 accessions TcSNP1110 NA 5 1969054 0 0 0 3.6e-05 10.1371/journal.pone.0260907 NA NA t3641.T000106 5 Mature fruit anthocyanin conc GWAS 421 accessions TcSNP644 NA 9 1220437 0 0 0 4.57e-05 10.1371/journal.pone.0260907 NA NA t3641.T000107 3 Fruit length GWAS 421 accessions TcSNP1110 NA 5 1969054 0 0 0 5.29e-05 10.1371/journal.pone.0260907 NA NA t3641.T000108 5 Filament anthocyanin conc GWAS 421 accessions TcSNP1183 NA 3 32973816 0 0 0 5.84e-05 10.1371/journal.pone.0260907 NA NA t3641.T000109 3 Log seed length GWAS 421 accessions TcSNP1335 NA 7 9085336 0 0 0 6.75e-05 10.1371/journal.pone.0260907 NA NA t3641.T000110 5 Filament anthocyanin conc GWAS 421 accessions TcSNP1441 NA 8 25585284 0 0 0 7.14e-05 10.1371/journal.pone.0260907 NA NA t3641.T000111 3 Log Seed length to width GWAS 421 accessions TcSNP823 NA 5 2546863 0 0 0 9.97e-05 10.1371/journal.pone.0260907 NA NA t3641.T000112 5 Mature fruit anthocyanin concentration GWAS 421 accessions TcSNP401 NA 4 20485872 0 0 0 2.58798410781488 10.1371/journal.pone.0260907 NA NA t3641.T000113 5 Mature fruit anthocyanin concentration GWAS 421 accessions TcSNP90 NA 5 35662586 0 0 0 2.65307424103541 10.1371/journal.pone.0260907 NA NA t3641.T000114 3 Seed width GWAS 421 accessions TcSNP1209 NA 4 16275149 0 0 0 1.90412104016011 10.1371/journal.pone.0260907 NA NA t3641.T000115 3 Seed width GWAS 421 accessions TcSNP555 NA 4 29189575 0 0 0 4.57572414550938 10.1371/journal.pone.0260907 NA NA t3641.T000116 3 Seed width GWAS 421 accessions TcSNP941 NA 6 15652450 0 0 0 0.00012320560383 10.1371/journal.pone.0260907 NA NA t3641.T000117 3 Seed width GWAS 421 accessions TcSNP825 NA 9 5556883 0 0 0 0.00026856002782 10.1371/journal.pone.0260907 NA NA t3641.T000118 3 Seed width GWAS 421 accessions TcSNP885 NA 2 40804772 0 0 0 0.00049361810904 10.1371/journal.pone.0260907 NA NA t3641.T000119 3 Seed width GWAS 421 accessions TcSNP1273 NA 3 0 0 0 0 0.00091697157133 10.1371/journal.pone.0260907 NA NA t3641.T000120 3 Log seed width GWAS 421 accessions TcSNP1273 NA 3 0 0 0 0 4.44660447417937 10.1371/journal.pone.0260907 NA NA t3641.T000121 3 Log seed width GWAS 421 accessions TcSNP555 NA 4 29189575 0 0 0 6.31400995478624 10.1371/journal.pone.0260907 NA NA t3641.T000122 3 Log seed width GWAS 421 accessions TcSNP1407 NA 5 1969183 0 0 0 0.00015504583559 10.1371/journal.pone.0260907 NA NA t3641.T000123 3 Log seed width GWAS 421 accessions TcSNP885 NA 2 40804772 0 0 0 0.00022078822037 10.1371/journal.pone.0260907 NA NA t3641.T000124 3 Log seed width GWAS 421 accessions TcSNP825 NA 9 5556883 0 0 0 0.00049268880678 10.1371/journal.pone.0260907 NA NA t3641.T000125 3 Seed length GWAS 421 accessions TcSNP1126 NA 7 1718308 0 0 0 0.00103724978907 10.1371/journal.pone.0260907 NA NA t3641.T000126 3 Seed length GWAS 421 accessions TcSNP701 NA 7 2896144 0 0 0 0.00393393498118 10.1371/journal.pone.0260907 NA NA t3641.T000127 3 Seed length GWAS 421 accessions TcSNP465 NA 9 28130241 0 0 0 0.00476504139393 10.1371/journal.pone.0260907 NA NA t3641.T000128 3 Seed length GWAS 421 accessions TcSNP67 NA 1 35469159 0 0 0 0.00552868904736 10.1371/journal.pone.0260907 NA NA t3641.T000129 3 Seed length GWAS 421 accessions TcSNP733 NA 5 2070839 0 0 0 0.00674769219536 10.1371/journal.pone.0260907 NA NA t3641.T000130 3 Seed length GWAS 421 accessions TcSNP344 NA 4 8445308 0 0 0 0.00748984323477 10.1371/journal.pone.0260907 NA NA t3641.T000131 3 Seed length GWAS 421 accessions TcSNP1482 NA 1 29970233 0 0 0 0.01237295920411 10.1371/journal.pone.0260907 NA NA t3641.T000132 3 Seed length GWAS 421 accessions TcSNP793 NA 9 31497572 0 0 0 0.01370553839155 10.1371/journal.pone.0260907 NA NA t3641.T000133 3 Seed length GWAS 421 accessions TcSNP1497 NA 3 23469043 0 0 0 0.01870259907755 10.1371/journal.pone.0260907 NA NA t3641.T000134 3 Seed length GWAS 421 accessions TcSNP1075 NA 1 32880996 0 0 0 0.01918300502168 10.1371/journal.pone.0260907 NA NA t3641.T000135 3 Seed length GWAS 421 accessions TcSNP953 NA 4 2822152 0 0 0 0.01980300005162 10.1371/journal.pone.0260907 NA NA t3641.T000136 3 Seed length GWAS 421 accessions TcSNP1237 NA 7 1916848 0 0 0 0.01981760044801 10.1371/journal.pone.0260907 NA NA t3641.T000137 3 Seed length GWAS 421 accessions TcSNP199 NA 4 2117598 0 0 0 0.01996756629841 10.1371/journal.pone.0260907 NA NA t3641.T000138 3 Seed length GWAS 421 accessions TcSNP1350 NA 1 35918110 0 0 0 0.02146014528049 10.1371/journal.pone.0260907 NA NA t3641.T000139 3 Seed length GWAS 421 accessions TcSNP642 NA 8 16399147 0 0 0 0.02184983236004 10.1371/journal.pone.0260907 NA NA t3641.T000140 3 Log seed length GWAS 421 accessions TcSNP344 NA 4 8445308 0 0 0 0.00150954180714 10.1371/journal.pone.0260907 NA NA t3641.T000141 3 Log seed length GWAS 421 accessions TcSNP733 NA 5 2070839 0 0 0 0.00170752636388 10.1371/journal.pone.0260907 NA NA t3641.T000142 3 Log seed length GWAS 421 accessions TcSNP1482 NA 1 29970233 0 0 0 0.00567484872804 10.1371/journal.pone.0260907 NA NA t3641.T000143 3 Log seed length GWAS 421 accessions TcSNP897 NA 3 23362296 0 0 0 0.00601124188437 10.1371/journal.pone.0260907 NA NA t3641.T000144 3 Log seed length GWAS 421 accessions TcSNP953 NA 4 2822152 0 0 0 0.00768178102917 10.1371/journal.pone.0260907 NA NA t3641.T000145 3 Log seed length GWAS 421 accessions TcSNP67 NA 1 35469159 0 0 0 0.00925226199958 10.1371/journal.pone.0260907 NA NA t3641.T000146 3 Cotyledon mass GWAS 421 accessions TcSNP986 NA 1 34452710 0 0 0 0.00097796235417 10.1371/journal.pone.0260907 NA NA t3641.T000147 3 Cotyledon mass GWAS 421 accessions TcSNP555 NA 4 29189575 0 0 0 0.00100953253370 10.1371/journal.pone.0260907 NA NA t3641.T000148 3 Cotyledon mass GWAS 421 accessions TcSNP28 NA 5 28592575 0 0 0 0.00104227062225 10.1371/journal.pone.0260907 NA NA t3641.T000149 3 Cotyledon mass GWAS 421 accessions TcSNP932 NA 9 1479475 0 0 0 0.00176129905553 10.1371/journal.pone.0260907 NA NA t3641.T000150 3 Cotyledon mass GWAS 421 accessions TcSNP465 NA 9 28130241 0 0 0 0.00527850748807 10.1371/journal.pone.0260907 NA NA t3641.T000151 3 Cotyledon mass GWAS 421 accessions TcSNP139 NA 8 4514627 0 0 0 0.00552406397438 10.1371/journal.pone.0260907 NA NA t3641.T000152 3 Cotyledon mass GWAS 421 accessions TcSNP448 NA 4 31153095 0 0 0 0.00590158188645 10.1371/journal.pone.0260907 NA NA t3641.T000153 3 Cotyledon mass GWAS 421 accessions TcSNP502 NA 9 3813628 0 0 0 0.00738704639089 10.1371/journal.pone.0260907 NA NA t3641.T000154 3 Cotyledon mass GWAS 421 accessions TcSNP1209 NA 4 16275149 0 0 0 0.00779044041704 10.1371/journal.pone.0260907 NA NA t3641.T000155 3 Cotyledon mass GWAS 421 accessions TcSNP1076 NA 9 27803371 0 0 0 0.00995509948135 10.1371/journal.pone.0260907 NA NA t3641.T000156 3 Cotyledon mass GWAS 421 accessions TcSNP982 NA 5 36725873 0 0 0 0.01074070603041 10.1371/journal.pone.0260907 NA NA t3641.T000157 3 Cotyledon mass GWAS 421 accessions TcSNP1157 NA 9 0 0 0 0 0.01262234104006 10.1371/journal.pone.0260907 NA NA t3641.T000158 3 Cotyledon mass GWAS 421 accessions TcSNP1216 NA 1 11220130 0 0 0 0.02322014666545 10.1371/journal.pone.0260907 NA NA t3641.T000159 3 Cotyledon mass GWAS 421 accessions TcSNP1230 NA 8 6644423 0 0 0 0.02367793955676 10.1371/journal.pone.0260907 NA NA t3641.T000160 3 Cotyledon mass GWAS 421 accessions TcSNP198 NA 4 31166960 0 0 0 0.02423385489452 10.1371/journal.pone.0260907 NA NA t3641.T000161 3 Cotyledon mass GWAS 421 accessions TcSNP937 NA 3 32163170 0 0 0 0.02503719168601 10.1371/journal.pone.0260907 NA NA t3641.T000162 3 Cotyledon mass GWAS 421 accessions TcSNP1338 NA 1 1750746 0 0 0 0.02810473907818 10.1371/journal.pone.0260907 NA NA t3641.T000163 3 Cotyledon mass GWAS 421 accessions TcSNP642 NA 8 16399147 0 0 0 0.03035409950383 10.1371/journal.pone.0260907 NA NA t3641.T000164 3 Log cotyledon mass GWAS 421 accessions TcSNP1126 NA 7 1718308 0 0 0 1.7663513745882e 10.1371/journal.pone.0260907 NA NA t3641.T000165 3 Log cotyledon mass GWAS 421 accessions TcSNP932 NA 9 1479475 0 0 0 9.56678413848808 10.1371/journal.pone.0260907 NA NA t3641.T000166 3 Log cotyledon mass GWAS 421 accessions TcSNP139 NA 8 4514627 0 0 0 0.00021895156924 10.1371/journal.pone.0260907 NA NA t3641.T000167 3 Log cotyledon mass GWAS 421 accessions TcSNP941 NA 6 15652450 0 0 0 0.00033089753105 10.1371/journal.pone.0260907 NA NA t3641.T000168 3 Log cotyledon mass GWAS 421 accessions TcSNP555 NA 4 29189575 0 0 0 0.00056598303210 10.1371/journal.pone.0260907 NA NA t3641.T000169 3 Log cotyledon mass GWAS 421 accessions TcSNP1042 NA 8 5134962 0 0 0 0.00080294443986 10.1371/journal.pone.0260907 NA NA t3641.T000170 3 Log cotyledon mass GWAS 421 accessions TcSNP344 NA 4 8445308 0 0 0 0.00098947813746 10.1371/journal.pone.0260907 NA NA t3641.T000171 3 Seed length to width GWAS 421 accessions TcSNP733 NA 5 2070839 0 0 0 1.12375323231204 10.1371/journal.pone.0260907 NA NA t3641.T000172 3 Seed length to width GWAS 421 accessions TcSNP841 NA 5 36814269 0 0 0 9.71745133769056 10.1371/journal.pone.0260907 NA NA t3641.T000173 3 Seed length to width GWAS 421 accessions TcSNP1441 NA 8 3710025 0 0 0 1.60001200707899 10.1371/journal.pone.0260907 NA NA t3641.T000174 3 Seed length to width GWAS 421 accessions TcSNP491 NA 2 3661524 0 0 0 0.00027455676826 10.1371/journal.pone.0260907 NA NA t3641.T000175 3 Seed length to width GWAS 421 accessions TcSNP522 NA 5 18878486 0 0 0 0.00053560530765 10.1371/journal.pone.0260907 NA NA t3641.T000176 3 Seed length to width GWAS 421 accessions TcSNP1273 NA 3 31335117 0 0 0 0.00057095835115 10.1371/journal.pone.0260907 NA NA t3641.T000177 3 Log seed length:width GWAS 421 accessions TcSNP841 NA 5 36814269 0 0 0 4.98287191602205 10.1371/journal.pone.0260907 NA NA t3641.T000178 3 Log seed length:width GWAS 421 accessions TcSNP637 NA 1 35985051 0 0 0 2.02764897660086 10.1371/journal.pone.0260907 NA NA t3641.T000179 3 Log seed length:width GWAS 421 accessions TcSNP733 NA 5 2070839 0 0 0 4.27832788779748 10.1371/journal.pone.0260907 NA NA t3641.T000180 3 Log seed length:width GWAS 421 accessions TcSNP1441 NA 8 3710025 0 0 0 0.00031528573173 10.1371/journal.pone.0260907 NA NA t3641.T000181 3 Log seed length:width GWAS 421 accessions TcSNP174 NA 4 19063212 0 0 0 0.00065868489505 10.1371/journal.pone.0260907 NA NA t3641.T000182 3 Log seed length:width GWAS 421 accessions TcSNP491 NA 2 3661524 0 0 0 0.00091197559961 10.1371/journal.pone.0260907 NA NA t3641.T000183 3 Log seed number GWAS 421 accessions TcSNP618 NA 9 34321333 0 0 0 0.00078175000159 10.1371/journal.pone.0260907 NA NA t3641.T000184 3 Log seed number GWAS 421 accessions TcSNP1350 NA 1 35918110 0 0 0 0.00132976153837 10.1371/journal.pone.0260907 NA NA t3641.T000185 3 Log seed number GWAS 421 accessions TcSNP737 NA 9 35995985 0 0 0 0.00242150469060 10.1371/journal.pone.0260907 NA NA t3641.T000186 3 Log seed number GWAS 421 accessions TcSNP663 NA 9 34480255 0 0 0 0.00271922567506 10.1371/journal.pone.0260907 NA NA t3641.T000187 3 Log Fruit width GWAS 421 accessions TcSNP192 NA 9 36685314 0 0 0 0.00279191455618 10.1371/journal.pone.0260907 NA NA t3641.T000188 3 Log Fruit width GWAS 421 accessions TcSNP1069 NA 10 669338 0 0 0 0.00348294059976 10.1371/journal.pone.0260907 NA NA t3641.T000189 3 Log Fruit width GWAS 421 accessions TcSNP1338 NA 1 1750746 0 0 0 0.00611284031821 10.1371/journal.pone.0260907 NA NA t3641.T000190 3 Log Fruit width GWAS 421 accessions TcSNP106 NA 3 27560981 0 0 0 0.00763629732648 10.1371/journal.pone.0260907 NA NA t3641.T000191 3 Log Fruit width GWAS 421 accessions TcSNP1157 NA 9 0 0 0 0 0.01042042194903 10.1371/journal.pone.0260907 NA NA t3641.T000192 3 Log Fruit width GWAS 421 accessions TcSNP459 NA 4 28240759 0 0 0 0.01136587504180 10.1371/journal.pone.0260907 NA NA t3641.T000193 3 Log Fruit width GWAS 421 accessions TcSNP1480 NA 2 6864891 0 0 0 0.01233577926584 10.1371/journal.pone.0260907 NA NA t3641.T000194 3 Log Fruit width GWAS 421 accessions TcSNP986 NA 1 34452710 0 0 0 0.01255547547551 10.1371/journal.pone.0260907 NA NA t3641.T000195 3 Log Fruit width GWAS 421 accessions TcSNP1018 NA 3 9585233 0 0 0 0.01643875727708 10.1371/journal.pone.0260907 NA NA t3641.T000196 3 Log Fruit width GWAS 421 accessions TcSNP555 NA 4 29189575 0 0 0 0.01815942600202 10.1371/journal.pone.0260907 NA NA t3641.T000197 3 Log Fruit width GWAS 421 accessions TcSNP55 NA 8 1279686 0 0 0 0.01903314035899 10.1371/journal.pone.0260907 NA NA t3641.T000198 3 Log Fruit width GWAS 421 accessions TcSNP642 NA 8 16399147 0 0 0 0.01920630676433 10.1371/journal.pone.0260907 NA NA t3641.T000199 3 Log Pod Index GWAS 421 accessions TcSNP642 NA 8 16399147 0 0 0 0.00109389478768 10.1371/journal.pone.0260907 NA NA t3641.T000200 3 Log Pod Index GWAS 421 accessions TcSNP28 NA 5 28592575 0 0 0 0.00203669365384 10.1371/journal.pone.0260907 NA NA t3641.T000201 3 Log Pod Index GWAS 421 accessions TcSNP555 NA 4 29189575 0 0 0 0.00332594064544 10.1371/journal.pone.0260907 NA NA t3641.T000202 3 Pod Index GWAS 421 accessions TcSNP28 NA 5 28592575 0 0 0 0.00060286278514 10.1371/journal.pone.0260907 NA NA t3641.T000203 3 Pod Index GWAS 421 accessions TcSNP642 NA 8 16399147 0 0 0 0.00102021547022 10.1371/journal.pone.0260907 NA NA t3641.T000204 3 Pod Index GWAS 421 accessions TcSNP555 NA 4 29189575 0 0 0 0.00108775939710 10.1371/journal.pone.0260907 NA NA t3641.T000205 3 Pod Index GWAS 421 accessions TcSNP1074 NA 10 2283680 0 0 0 0.00227506524377 10.1371/journal.pone.0260907 NA NA t3641.T000206 3 Pod Index GWAS 421 accessions TcSNP986 NA 1 34452710 0 0 0 0.00243261927764 10.1371/journal.pone.0260907 NA NA t3641.T000207 3 Pod Index GWAS 421 accessions TcSNP1350 NA 1 35918110 0 0 0 0.00616559169671 10.1371/journal.pone.0260907 NA NA t3641.T000208 3 Pod Index GWAS 421 accessions TcSNP1338 NA 1 1750746 0 0 0 0.00666780472968 10.1371/journal.pone.0260907 NA NA t3641.T000209 1 Resistance to Phytophthora palmivora Association mapping SCA6, SIC23, TSH1188 mTcCIR444 NA 8 0 0 0 0 0.00015268 10.3390/pathogens10080961 NA NA t3641.T000210 1 Resistance to Phytophthora palmivora Association mapping SCA6, SIC23, TSH1188 mTcCIR200 NA 8 0 0 0 0 0.005 10.3390/pathogens10080961 NA NA t3641.T000211 1 Resistance to Phytophthora palmivora Association mapping SCA6, SIC23, TSH1188 mTcCIR268 NA 2 0 0 0 0 0.04508 10.3390/pathogens10080961 NA NA t3641.T000212 1 Resistance to Phytophthora palmivora Association mapping SCA6, SIC23, TSH1188 mTcCIR81 NA 3 0 0 0 0 0.0489 10.3390/pathogens10080961 NA NA t3641.T000213 Tc02v2_g014130 1 Deformed branches witches’ broom disease GWAS 102 accessions NA 2 9316991 0 0 0 2 E-08 10.1534/g3.120.401153 NA NA t3641.T000214 Tc03v2_g015970 1 Deformed branches witches’ broom disease GWAS 102 accessions NA 3 29572898 0 0 0 5 E-09 10.1534/g3.120.401153 NA NA t3641.T000215 Tc02v2_g001650 1 Flower cushion broom witches’ broom disease GWAS 102 accessions NA 2 1064432 0 0 0 4 E-07 10.1534/g3.120.401153 NA NA t3641.T000216 Tc02v2_g001090 1 Flower cushion broom witches’ broom disease GWAS 102 accessions NA 2 770436 0 0 0 4 E-07 10.1534/g3.120.401153 NA NA t3641.T000217 Tc02v2_g007330 1 Flower cushion broom witches’ broom disease GWAS 102 accessions NA 2 4523324 0 0 0 2e-07 10.1534/g3.120.401153 NA NA t3641.T000218 Tc00cons_t021470.1 1 Pods frosty pod rot disease GWAS 102 accessions NA 1 18354976 0 0 0 2 E-04 10.1534/g3.120.401153 NA NA t3641.T000219 Tc08v2_g012850 3 Harvested healthy pods GWAS 102 accessions NA 8 10111356 0 0 0 4 E-07 10.1534/g3.120.401153 NA NA t3641.T000220 Tc00cons_t021570.1 3 Harvested healthy pods GWAS 102 accessions NA 2 21845071 0 0 0 7 E-09 10.1534/g3.120.401153 NA NA t3641.T000221 1 Deformed branches witches’ broom disease GWAS 102 accessions NA 2 9415422 0 0 0 6 E-09 10.1534/g3.120.401153 NA NA t3641.T000222 Thecc1EG015342 1 Deformed branches witches’ broom disease GWAS 102 accessions NA 3 27458385 0 0 0 1 E-04 10.1534/g3.120.401153 NA NA t3641.T000223 Thecc1EG006180 1 Flower cushion brrom witches’ broom disease GWAS 102 accessions NA 2 1107779 0 0 0 5 E-07 10.1534/g3.120.401153 NA NA t3641.T000224 Thecc1EG006099 1 Flower cushion brrom witches’ broom disease GWAS 102 accessions NA 2 794296 0 0 0 5 E-07 10.1534/g3.120.401153 NA NA t3641.T000225 Thecc1EG006939 1 Pods frosty pod rot disease GWAS 102 accessions NA 2 4567399 0 0 0 2 E-08 10.1534/g3.120.401153 NA NA t3641.T000226 Thecc1EG003068 1 Pods frosty pod rot disease GWAS 102 accessions NA 1 18890740 0 0 0 3 E-04 10.1534/g3.120.401153 NA NA t3641.T000227 Thecc1EG003830 1 Pods frosty pod rot disease GWAS 102 accessions NA 1 27025499 0 0 0 4 E-04 10.1534/g3.120.401153 NA NA t3641.T000228 3 Harvested healthy pods GWAS 102 accessions NA 8 9466348 0 0 0 1 E-04 10.1534/g3.120.401153 NA NA t3641.T000229 3 Harvested healthy pods GWAS 102 accessions NA 8 8295774 0 0 0 3 E-04 10.1534/g3.120.401153 NA NA t3641.T000230 Thecc1EG017982 3 Harvested healthy pods GWAS 102 accessions NA 4 9491291 0 0 0 3 E-04 10.1534/g3.120.401153 NA NA t3641.T000231 3 Number of pods harvested Interval mapping TSH 1188 × CCN 51 Tcm001s01308520 NA 0 0 0 0 5.38 4.99 10.1038/s41438-020-0250-3 NA NA t3641.T000232 3 Number of pods harvested Interval mapping TSH 1188 × CCN 51 Tcm004s00615809 NA 0 0 0 0 3.29 23.5 10.1038/s41438-020-0250-3 NA NA t3641.T000233 3 Number of healthy pods harvested Interval mapping TSH 1188 × CCN 51 Tcm001s01308520 NA 0 0 0 0 5.38 4.21 10.1038/s41438-020-0250-3 NA NA t3641.T000234 3 Number of healthy pods harvested Interval mapping TSH 1188 × CCN 51 Tcm004s00615809 NA 0 0 0 0 3.29 28.02 10.1038/s41438-020-0250-3 NA NA t3641.T000235 3 Dry bean weight Interval mapping TSH 1188 × CCN 51 Tcm001s18406546 NA 0 0 0 0 58.04 8.21 10.1038/s41438-020-0250-3 NA NA t3641.T000236 3 Dry bean weight Interval mapping TSH 1188 × CCN 51 Tcm002s07453904 NA 0 0 0 0 41.22 3.58 10.1038/s41438-020-0250-3 NA NA t3641.T000237 3 Dry bean weight Interval mapping TSH 1188 × CCN 51 Tcm002s15300388 NA 0 0 0 0 53.65 3.28 10.1038/s41438-020-0250-3 NA NA t3641.T000238 3 Dry bean weight Interval mapping TSH 1188 × CCN 51 Tcm003s00621672 NA 0 0 0 0 3.2 7.18 10.1038/s41438-020-0250-3 NA NA t3641.T000239 3 Dry bean weight Interval mapping TSH 1188 × CCN 51 Tcm003s27977985 NA 0 0 0 0 57.54 4.2 10.1038/s41438-020-0250-3 NA NA t3641.T000240 3 Dry bean weight Interval mapping TSH 1188 × CCN 51 Tcm003s30366194 NA 0 0 0 0 68.34 16.6 10.1038/s41438-020-0250-3 NA NA t3641.T000241 3 Dry bean weight Interval mapping TSH 1188 × CCN 51 Tcm004s00289192 NA 0 0 0 0 0.11 37.59 10.1038/s41438-020-0250-3 NA NA t3641.T000242 3 Dry bean weight Interval mapping TSH 1188 × CCN 51 Tcm004s30466731 NA 0 0 0 0 66.57 10.66 10.1038/s41438-020-0250-3 NA NA t3641.T000243 3 Dry bean weight Interval mapping TSH 1188 × CCN 51 Tcm005s29846151 NA 0 0 0 0 58.56 6.15 10.1038/s41438-020-0250-3 NA NA t3641.T000244 3 Dry bean weight Interval mapping TSH 1188 × CCN 51 Tcm005s33377306 NA 0 0 0 0 72.35 11.41 10.1038/s41438-020-0250-3 NA NA t3641.T000245 3 Dry bean weight Interval mapping TSH 1188 × CCN 51 Tcm005s38257511 NA 0 0 0 0 94.52 4.24 10.1038/s41438-020-0250-3 NA NA t3641.T000246 3 Dry bean weight Interval mapping TSH 1188 × CCN 51 Tcm006s20470604 NA 0 0 0 0 33.86 12.33 10.1038/s41438-020-0250-3 NA NA t3641.T000247 3 Dry bean weight Interval mapping TSH 1188 × CCN 51 Tcm006s22739149 NA 0 0 0 0 47.26 9.27 10.1038/s41438-020-0250-3 NA NA t3641.T000248 3 Dry bean weight Interval mapping TSH 1188 × CCN 51 Tcm008s04113686 NA 0 0 0 0 27.41 23.68 10.1038/s41438-020-0250-3 NA NA t3641.T000249 3 Dry bean weight Interval mapping TSH 1188 × CCN 51 Tcm009s03430458 NA 0 0 0 0 21.71 8.59 10.1038/s41438-020-0250-3 NA NA t3641.T000250 3 Dry bean weight Interval mapping TSH 1188 × CCN 51 Tcm009s39845182 NA 0 0 0 0 101.35 4.35 10.1038/s41438-020-0250-3 NA NA t3641.T000251 3 Pod index Interval mapping TSH 1188 × CCN 51 Tcm001s18406546 NA 0 0 0 0 58.04 4.75 10.1038/s41438-020-0250-3 NA NA t3641.T000252 3 Pod index Interval mapping TSH 1188 × CCN 51 Tcm002s07453904 NA 0 0 0 0 41.22 4.25 10.1038/s41438-020-0250-3 NA NA t3641.T000253 3 Pod index Interval mapping TSH 1188 × CCN 51 Tcm002s23708704 NA 0 0 0 0 57.94 9.23 10.1038/s41438-020-0250-3 NA NA t3641.T000254 3 Pod index Interval mapping TSH 1188 × CCN 51 Tcm003s00621672 NA 0 0 0 0 3.2 3.25 10.1038/s41438-020-0250-3 NA NA t3641.T000255 3 Pod index Interval mapping TSH 1188 × CCN 51 Tcm003s29414854 NA 0 0 0 0 64.59 5.16 10.1038/s41438-020-0250-3 NA NA t3641.T000256 3 Pod index Interval mapping TSH 1188 × CCN 51 Tcm004s01127580 NA 0 0 0 0 5.16 7.1 10.1038/s41438-020-0250-3 NA NA t3641.T000257 3 Pod index Interval mapping TSH 1188 × CCN 51 Tcm005s24838905 NA 0 0 0 0 44.45 4.18 10.1038/s41438-020-0250-3 NA NA t3641.T000258 3 Pod index Interval mapping TSH 1188 × CCN 51 Tcm006s22739149 NA 0 0 0 0 47.26 8.81 10.1038/s41438-020-0250-3 NA NA t3641.T000259 3 Pod index Interval mapping TSH 1188 × CCN 51 Tcm008s00170802 NA 0 0 0 0 0.11 4.4 10.1038/s41438-020-0250-3 NA NA t3641.T000260 3 Pod index Interval mapping TSH 1188 × CCN 51 Tcm009s39845182 NA 0 0 0 0 101.35 3.41 10.1038/s41438-020-0250-3 NA NA t3641.T000261 3 Yield Interval mapping TSH 1188 × CCN 51 Tcm003s29414854 NA 0 0 0 0 64.59 3.11 10.1038/s41438-020-0250-3 NA NA t3641.T000262 3 Yield Interval mapping TSH 1188 × CCN 51 Tcm004s00615809 NA 0 0 0 0 3.3 7.97 10.1038/s41438-020-0250-3 NA NA t3641.T000263 3 Yield Interval mapping TSH 1188 × CCN 51 Tcm009s36667972 NA 0 0 0 0 85.1 3.4 10.1038/s41438-020-0250-3 NA NA t3641.T000264 5 C16:0 Interval mapping TSH 1188 × CCN 51 MP01 32918760 NA 1 32918760 0 1 34560615 0 8.8 10.3389/fpls.2019.01159 NA NA t3641.T000265 5 C16:0 Interval mapping TSH 1188 × CCN 51 MP01 992801 NA 4 651315 0 4 1006787 0 27.6 10.3389/fpls.2019.01159 NA NA t3641.T000266 5 C16:0 Interval mapping TSH 1188 × CCN 51 MP01 7581095 NA 7 4489509 0 7 10151992 0 6 10.3389/fpls.2019.01159 NA NA t3641.T000267 5 C16:0 Interval mapping TSH 1188 × CCN 51 MP01 1169653 NA 8 869653 0 8 1469653 0 7.1 10.3389/fpls.2019.01159 NA NA t3641.T000268 5 C16:0 Interval mapping TSH 1188 × CCN 51 MP01 6156866 NA 9 6064842 0 9 6463616 0 5.8 10.3389/fpls.2019.01159 NA NA t3641.T000269 5 C16:0 Interval mapping TSH 1188 × CCN 51 MP01 22559001 NA 10 22428849 0 10 24223155 0 5.2 10.3389/fpls.2019.01159 NA NA t3641.T000270 5 C18:0 Interval mapping TSH 1188 × CCN 51 MP01 10168848 NA 1 8353112 0 1 11276895 0 10 10.3389/fpls.2019.01159 NA NA t3641.T000271 5 C18:0 Interval mapping TSH 1188 × CCN 51 MP01 311794 NA 4 11794 0 4 611794 0 16.3 10.3389/fpls.2019.01159 NA NA t3641.T000272 5 C18:0 Interval mapping TSH 1188 × CCN 51 MP01 4402504 NA 7 4369124 0 7 7678456 0 7.3 10.3389/fpls.2019.01159 NA NA t3641.T000273 5 C18:0 Interval mapping TSH 1188 × CCN 51 MP01 2743235 NA 8 2743235 0 8 3163772 0 9.3 10.3389/fpls.2019.01159 NA NA t3641.T000274 5 C18:0 Interval mapping TSH 1188 × CCN 51 MP01 33349545 NA 9 33049545 0 9 33649545 0 3.8 10.3389/fpls.2019.01159 NA NA t3641.T000275 5 C18:0 Interval mapping TSH 1188 × CCN 51 MP01 21842572 NA 10 3163433 0 10 24223155 0 4.7 10.3389/fpls.2019.01159 NA NA t3641.T000276 5 C18:1 Interval mapping TSH 1188 × CCN 51 MP01 34641359 NA 1 34341359 0 1 34941359 0 4 10.3389/fpls.2019.01159 NA NA t3641.T000277 5 C18:1 Interval mapping TSH 1188 × CCN 51 MP01 30259960 NA 3 30259960 0 3 30606185 0 4.5 10.3389/fpls.2019.01159 NA NA t3641.T000278 5 C18:1 Interval mapping TSH 1188 × CCN 51 MP01 16507100 NA 4 16210309 0 4 17636309 0 10 10.3389/fpls.2019.01159 NA NA t3641.T000279 5 C18:1 Interval mapping TSH 1188 × CCN 51 MP01 13900060 NA 6 13545822 0 6 16515632 0 6.2 10.3389/fpls.2019.01159 NA NA t3641.T000280 5 C18:1 Interval mapping TSH 1188 × CCN 51 MP01 15120872 NA 8 9610444 0 8 15631835 0 5.3 10.3389/fpls.2019.01159 NA NA t3641.T000281 5 C18:2 Interval mapping TSH 1188 × CCN 51 MP01 12340943 NA 1 12200052 0 1 13162985 0 7.6 10.3389/fpls.2019.01159 NA NA t3641.T000282 5 C18:2 Interval mapping TSH 1188 × CCN 51 MP01 41100466 NA 2 40846923 0 2 41141331 0 5.5 10.3389/fpls.2019.01159 NA NA t3641.T000283 5 C18:2 Interval mapping TSH 1188 × CCN 51 MP01 21656111 NA 4 21656111 0 4 25267317 0 5.6 10.3389/fpls.2019.01159 NA NA t3641.T000284 5 C18:2 Interval mapping TSH 1188 × CCN 51 MP01 28110818 NA 5 24696466 0 5 32855680 0 5.9 10.3389/fpls.2019.01159 NA NA t3641.T000285 5 C18:2 Interval mapping TSH 1188 × CCN 51 MP01 37832439 NA 9 37532439 0 9 38132439 0 7.2 10.3389/fpls.2019.01159 NA NA t3641.T000286 5 C20:0 Interval mapping TSH 1188 × CCN 51 MP01 7662068 NA 2 5894024 0 2 9348946 0 5.7 10.3389/fpls.2019.01159 NA NA t3641.T000287 5 C20:0 Interval mapping TSH 1188 × CCN 51 MP01 19637361 NA 4 19637361 0 4 26233319 0 18.8 10.3389/fpls.2019.01159 NA NA t3641.T000288 5 C20:0 Interval mapping TSH 1188 × CCN 51 MP01 23105784 NA 6 23105784 0 6 23272507 0 11.7 10.3389/fpls.2019.01159 NA NA t3641.T000289 5 C20:0 Interval mapping TSH 1188 × CCN 51 MP01 3274675 NA 8 2113570 0 8 3274675 0 18.4 10.3389/fpls.2019.01159 NA NA t3641.T000290 5 C20:0 Interval mapping TSH 1188 × CCN 51 MP01 8949637 NA 9 8689672 0 9 9216013 0 31.8 10.3389/fpls.2019.01159 NA NA t3641.T000291 5 % Fat Content Interval mapping TSH 1188 × CCN 51 MP01 7032556 NA 2 6637416 0 2 7831310 0 9.8 10.3389/fpls.2019.01159 NA NA t3641.T000292 5 % Fat Content Interval mapping TSH 1188 × CCN 51 MP01 24615758 NA 3 12502277 0 3 25250690 0 4.6 10.3389/fpls.2019.01159 NA NA t3641.T000293 5 % Fat Content Interval mapping TSH 1188 × CCN 51 MP01 19637361 NA 4 19637361 0 4 26233319 0 4.1 10.3389/fpls.2019.01159 NA NA t3641.T000294 5 % Fat Content Interval mapping TSH 1188 × CCN 51 MP01 8884977 NA 5 8884977 0 5 18719781 0 6.2 10.3389/fpls.2019.01159 NA NA t3641.T000295 5 % Fat Content Interval mapping TSH 1188 × CCN 51 MP01 3766082 NA 6 3512802 0 6 4938058 0 7.2 10.3389/fpls.2019.01159 NA NA t3641.T000296 5 % Fat Content Interval mapping TSH 1188 × CCN 51 MP01 9216013 NA 9 8689672 0 9 9263083 0 6.6 10.3389/fpls.2019.01159 NA NA t3641.T000297 5 C18:2 Interval mapping TSH 1188 × CCN 51 MP01 41082951 NA 2 40846923 0 2 41141331 0 4.17 10.3389/fpls.2019.01159 NA NA t3641.T000298 5 C20:0 Interval mapping TSH 1188 × CCN 51 MP01 1006787 NA 4 1006787 0 4 1006787 0 4.06 10.3389/fpls.2019.01159 NA NA t3641.T000299 5 C20:0 Interval mapping TSH 1188 × CCN 51 MP01 8689672 NA 9 8689672 0 9 8757982 0 4.27 10.3389/fpls.2019.01159 NA NA t3641.T000300 5 C16:0 Interval mapping TSH 1188 × CCN 51 MP01 311794 NA 4 311794 0 4 1307427 0 18.32 10.3389/fpls.2019.01159 NA NA t3641.T000301 5 C18:1 Interval mapping TSH 1188 × CCN 51 MP01 1006787 NA 4 1006787 0 4 1006787 0 11.16 10.3389/fpls.2019.01159 NA NA t3641.T000302 5 C20:0 Interval mapping TSH 1188 × CCN 51 MP01 6064842 NA 9 6064842 0 9 8372974 0 8.18 10.3389/fpls.2019.01159 NA NA t3641.T000303 5 C20:0 Interval mapping TSH 1188 × CCN 51 MP01 19637361 NA 4 19637361 0 4 26233319 0 6.58 10.3389/fpls.2019.01159 NA NA t3641.T000304 5 C18:0 Interval mapping TSH 1188 × CCN 51 MP01 709649 NA 4 615809 0 4 712489 0 5.15 10.3389/fpls.2019.01159 NA NA t3641.T000305 5 C20:0 Interval mapping TSH 1188 × CCN 51 MP01 3274675 NA 8 2227678 0 8 5284396 0 4.74 10.3389/fpls.2019.01159 NA NA t3641.T000306 5 C20:0 Interval mapping TSH 1188 × CCN 51 MP01 24366215 NA 6 23105784 0 6 24526606 0 4.63 10.3389/fpls.2019.01159 NA NA t3641.T000307 5 C18:2 Interval mapping TSH 1188 × CCN 51 MP01 29405116 NA 5 29143790 0 5 31845564 0 4.56 10.3389/fpls.2019.01159 NA NA t3641.T000308 5 C18;1 Interval mapping TSH 1188 × CCN 51 MP01 13900060 NA 6 10137698 0 6 16515632 0 4.51 10.3389/fpls.2019.01159 NA NA t3641.T000309 5 % Fat Content Interval mapping TSH 1188 × CCN 51 MP01 36125454 NA 5 36125454 0 5 36125454 0 4.05 10.3389/fpls.2019.01159 NA NA t3641.T000310 5 C18:0 Interval mapping TSH 1188 × CCN 51 MP01 4606155 NA 5 4070263 0 5 4670177 0 3.88 10.3389/fpls.2019.01159 NA NA t3641.T000311 5 Chirimoya Pod GWAS Malvinas NA 1 5425381 0 0 0 6.03 × 10-11 10.3389/fpls.2018.00343 NA NA t3641.T000312 5 Cushion Broom GWAS Malvinas NA 1 5506394 0 0 0 5.87 × 10-6 10.3389/fpls.2018.00343 NA NA t3641.T000313 5 Monilia Pod GWAS Malvinas NA 1 5711689 0 0 0 2.25 × 10-5 10.3389/fpls.2018.00343 NA NA t3641.T000314 3 Fresh Weight GWAS Ganaderia NA 1 34352267 0 0 0 5.66 × 10-7 10.3389/fpls.2018.00343 NA NA t3641.T000315 5 Chirimoya Pod GWAS Tecas NA 1 34741393 0 0 0 6.32 × 10-7 10.3389/fpls.2018.00343 NA NA t3641.T000316 3 Fresh Weight GWAS Ganaderia NA 2 1567531 0 0 0 9.35 × 10-7 10.3389/fpls.2018.00343 NA NA t3641.T000317 5 Cushion Br GWAS Tecas NA 2 41557641 0 0 0 1.09 × 10-5 10.3389/fpls.2018.00343 NA NA t3641.T000318 3 Fresh Weight GWAS Ganaderia NA 3 19309282 0 0 0 1.03 × 10-5 10.3389/fpls.2018.00343 NA NA t3641.T000319 5 Monilia Pod GWAS Malvinas NA 3 27634037 0 0 0 2.62 × 10-6 10.3389/fpls.2018.00343 NA NA t3641.T000320 3 Fresh Weight GWAS Ganaderia NA 3 29600619 0 0 0 3.32 × 10-6 10.3389/fpls.2018.00343 NA NA t3641.T000321 5 Monilia Pod GWAS Malvinas NA 5 36110563 0 0 0 4.71 × 10-7 10.3389/fpls.2018.00343 NA NA t3641.T000322 5 Cushion Br. GWAS Ganaderia NA 6 23401812 0 0 0 9.03 × 10-8 10.3389/fpls.2018.00343 NA NA t3641.T000323 3 Fresh Weight GWAS Ganaderia NA 7 6470480 0 0 0 3.28 × 10-6 10.3389/fpls.2018.00343 NA NA t3641.T000324 5 Chirimoya Pod GWAS Malvinas NA 7 15116846 0 0 0 1.44 × 10-8 10.3389/fpls.2018.00343 NA NA t3641.T000325 5 Cushion Br GWAS Tecas NA 7 17120099 0 0 0 1.19 × 10-7 10.3389/fpls.2018.00343 NA NA t3641.T000326 5 Vegetative Broom GWAS Ganaderia NA 8 1534915 0 0 0 3.66 × 10-6 10.3389/fpls.2018.00343 NA NA t3641.T000327 3 Fresh Weight GWAS Ganaderia NA 8 12621160 0 0 0 9.08 × 10-6 10.3389/fpls.2018.00343 NA NA t3641.T000328 5 Monilia Pod GWAS Malvinas NA 9 2233636 0 0 0 5.39 × 10-12 10.3389/fpls.2018.00343 NA NA t3641.T000329 3 Fresh Weight GWAS Ganaderia NA 9 6870452 0 0 0 7.83 × 10-8 10.3389/fpls.2018.00343 NA NA t3641.T000330 5 Chirimoya Pod GWAS Tecas NA 9 7802949 0 0 0 3.03 × 10-7 10.3389/fpls.2018.00343 NA NA t3641.T000331 5 Chirimoya Pod GWAS Tecas NA 9 8630113 0 0 0 4.22 × 10-6 10.3389/fpls.2018.00343 NA NA t3641.T000332 5 Vegetative Broom GWAS Ganaderia NA 9 14800629 0 0 0 3.06 × 10-6 10.3389/fpls.2018.00343 NA NA t3641.T000333 5 Monilia Pod GWAS Malvinas NA 9 16273895 0 0 0 1.43 × 10-10 10.3389/fpls.2018.00343 NA NA t3641.T000334 5 Monilia Pod GWAS Tecas NA 9 17023030 0 0 0 8.32 × 10-6 10.3389/fpls.2018.00343 NA NA t3641.T000335 3 Fresh Weight GWAS Ganaderia NA 9 19161589 0 0 0 1.39 × 10-5 10.3389/fpls.2018.00343 NA NA t3641.T000336 5 Vegetative Broom GWAS Ganaderia NA 9 27786422 0 0 0 4.22 × 10-6 10.3389/fpls.2018.00343 NA NA t3641.T000337 3 Fresh Weight GWAS Tecas NA 10 1207822 0 0 0 2.46 × 10-6 10.3389/fpls.2018.00343 NA NA t3641.T000338 5 Monilia Pod GWAS Malvinas NA 10 3489346 0 0 0 5.36 × 10-8 10.3389/fpls.2018.00343 NA NA t3641.T000339 3 Fresh Weight GWAS Ganaderia NA 10 3902074 0 0 0 4.97 × 10-6 10.3389/fpls.2018.00343 NA NA t3641.T000340 1 Ceratocystis wilt disease resistance Interval mapping TSH 1188 × CCN 51 F1 Tcm004s02747866 NA IV 11 0 0 0 4.2 10.3389/fpls.2018.00155 NA NA t3641.T000341 1 Ceratocystis wilt disease resistance Interval mapping TSH 1188 × CCN 51 F1 Tcm004s02243097 NA IV 9 0 0 0 4 10.3389/fpls.2018.00155 NA NA t3641.T000342 1 Ceratocystis wilt disease resistance Interval mapping TSH 1188 × CCN 51 F1 Tcm006s13222057 NA VI 21 0 0 0 37.07 10.3389/fpls.2018.00155 NA NA t3641.T000343 1 Ceratocystis wilt disease resistance Interval mapping TSH 1188 × CCN 51 F1 Tcm006s13371871 NA VI 21 0 0 0 48.85 10.3389/fpls.2018.00155 NA NA t3641.T000344 1 Ceratocystis wilt disease resistance Interval mapping TSH 1188 × CCN 51 F1 Tcm006s13372133 NA VI 21 0 0 0 48.85 10.3389/fpls.2018.00155 NA NA t3641.T000345 5 Cherelle wilt ratio Composite interval mapping Stalin A NA 4 366005 0 4 469522 0 33 10.3389/fpls.2017.02008 NA NA t3641.T000346 1 Number of pods with Cherelle Wilt Composite interval mapping Stalin A NA 4 350423 0 4 469522 0 44.96 10.3389/fpls.2017.02008 NA NA t3641.T000347 1 Number of pods with Cherelle Wilt Composite interval mapping Stalin A NA 4 21483709 0 4 22475637 0 11.08 10.3389/fpls.2017.02008 NA NA t3641.T000348 1 Probability of monilia infection Composite interval mapping Stalin A NA 4 4014339 0 4 15460491 0 4.68 10.3389/fpls.2017.02008 NA NA t3641.T000349 1 Probability of monilia infection Composite interval mapping Stalin A NA 5 2900378 0 5 8370672 0 5.97 10.3389/fpls.2017.02008 NA NA t3641.T000350 1 Probability of monilia infection Composite interval mapping Stalin A NA 9 691988 0 9 1148672 0 25.85 10.3389/fpls.2017.02008 NA NA t3641.T000351 1 % of Sick pods (Non-Monilia) Composite interval mapping Stalin A NA 2 4520909 0 2 4916911 0 6.47 10.3389/fpls.2017.02008 NA NA t3641.T000352 1 % of Sick pods (Non-Monilia) Composite interval mapping Stalin A NA 4 110232 0 4 651315 0 7.05 10.3389/fpls.2017.02008 NA NA t3641.T000353 1 % of Sick pods (Non-Monilia) Composite interval mapping Stalin A NA 5 2506854 0 5 3708678 0 5.44 10.3389/fpls.2017.02008 NA NA t3641.T000354 1 Number of Monilia infected pods Composite interval mapping Stalin A NA 4 300498 0 4 1246640 0 12.74 10.3389/fpls.2017.02008 NA NA t3641.T000355 1 Number of Monilia infected pods Composite interval mapping Stalin A NA 4 19936255 0 4 22288255 0 6.5 10.3389/fpls.2017.02008 NA NA t3641.T000356 1 Proportion of Monilia infected pods Interval mapping Stalin A NA 9 777617 0 9 2162213 0 4.86 10.3389/fpls.2017.02008 NA NA t3641.T000357 3 Fresh weight Composite interval mapping Stalin A NA 3 23507015 0 3 26121426 0 4.31 10.3389/fpls.2017.02008 NA NA t3641.T000358 3 Fresh weight Composite interval mapping Stalin A NA 4 350423 0 4 1286042 0 13.36 10.3389/fpls.2017.02008 NA NA t3641.T000359 3 Fresh weight Composite interval mapping Stalin A NA 4 20371242 0 4 24342024 0 6.53 10.3389/fpls.2017.02008 NA NA t3641.T000360 3 Fresh weight Composite interval mapping Stalin A NA 6 25226798 0 6 26429152 0 6 10.3389/fpls.2017.02008 NA NA t3641.T000361 3 Fresh weight Composite interval mapping Stalin B NA 3 27176987 0 3 27831587 0 6.6 10.3389/fpls.2017.02008 NA NA t3641.T000362 3 Number of total pods Composite interval mapping Stalin A NA 4 300498 0 4 469522 0 21.64 10.3389/fpls.2017.02008 NA NA t3641.T000363 3 Number of total pods Composite interval mapping Stalin A NA 4 20463832 0 4 21986021 0 8.98 10.3389/fpls.2017.02008 NA NA t3641.T000364 3 Fresh weight/pod Composite interval mapping Stalin A NA 1 1045754 0 1 1846589 0 9.05 10.3389/fpls.2017.02008 NA NA t3641.T000365 3 Fresh weight/pod Composite interval mapping Stalin A NA 1 35086841 0 1 35627935 0 13.97 10.3389/fpls.2017.02008 NA NA t3641.T000366 3 Fresh weight/pod Composite interval mapping Stalin A NA 2 9166638 0 2 10521586 0 23.63 10.3389/fpls.2017.02008 NA NA t3641.T000367 3 Fresh weight/pod Composite interval mapping Stalin A NA 2 35480481 0 2 35553943 0 8.36 10.3389/fpls.2017.02008 NA NA t3641.T000368 3 Fresh weight/pod Composite interval mapping Stalin A NA 3 28601733 0 3 29113047 0 9.78 10.3389/fpls.2017.02008 NA NA t3641.T000369 3 Fresh weight/pod Composite interval mapping Stalin A NA 4 110232 0 4 469522 0 8.54 10.3389/fpls.2017.02008 NA NA t3641.T000370 3 Fresh weight/pod Composite interval mapping Stalin A NA 4 27585575 0 4 28544329 0 22.95 10.3389/fpls.2017.02008 NA NA t3641.T000371 3 Fresh weight/pod Composite interval mapping Stalin B NA 1 2109609 0 1 2661282 0 6.45 10.3389/fpls.2017.02008 NA NA t3641.T000372 3 Fresh weight/pod Composite interval mapping Stalin B NA 1 37361806 0 1 38439094 0 5.39 10.3389/fpls.2017.02008 NA NA t3641.T000373 3 Fresh weight/pod Composite interval mapping Stalin B NA 2 4915701 0 2 5958246 0 6.45 10.3389/fpls.2017.02008 NA NA t3641.T000374 3 Fresh weight/pod Composite interval mapping Stalin B NA 2 37650669 0 2 38340399 0 3.98 10.3389/fpls.2017.02008 NA NA t3641.T000375 3 Fresh weight/pod Composite interval mapping Stalin B NA 4 32660090 0 4 33359087 0 6.32 10.3389/fpls.2017.02008 NA NA t3641.T000376 3 Fresh weight/pod Composite interval mapping Stalin B NA 5 21342618 0 5 26783779 0 7.35 10.3389/fpls.2017.02008 NA NA t3641.T000377 3 Fresh weight/pod Composite interval mapping Stalin B NA 7 3067049 0 7 4339051 0 5.32 10.3389/fpls.2017.02008 NA NA t3641.T000378 3 Fresh weight/pod Composite interval mapping Stalin B NA 8 2337803 0 8 4670677 0 4.87 10.3389/fpls.2017.02008 NA NA