t80379.T000001 AnRGO5 1 Anthracnose resistance MapQTL 6.0 Interspecific cross BC4S1 [('77013' x 'PBC932') x '77013'] P5in-2266-404 NA 0 0 P5in-2268-978 0 0 24.37 10.1186/s12870-019-2115-1 NA NA t80379.T000002 pc1 6 Chlorophyll content Recombination analysis Near Isogenic Lines (NIL) F2 F23 NA 1 0 0 H05 0 0 10.1111/tpj.14305 NA NA t80379.T000003 pc1 6 Chloroplast compartment size Recombination analysis Near Isogenic Lines (NIL) F2 F23 NA 1 0 0 H05 0 0 10.1111/tpj.14305 NA NA t80379.T000004 pc1 6 Chloroplast area Recombination analysis Near Isogenic Lines (NIL) F2 F23 NA 1 0 0 H05 0 0 10.1111/tpj.14305 NA NA t80379.T000005 pc1 6 Chloroplasts number per cell Recombination analysis Near Isogenic Lines (NIL) F2 F23 NA 1 0 0 H05 0 0 10.1111/tpj.14305 NA NA t80379.T000006 pc1 6 Fruit Weight Recombination analysis Near Isogenic Lines (NIL) F2 F23 NA 1 0 0 H05 0 0 10.1111/tpj.14305 NA NA t80379.T000007 pc1 6 Total soluble solids (Brix) Recombination analysis Near Isogenic Lines (NIL) F2 F23 NA 1 0 0 H05 0 0 10.1111/tpj.14305 NA NA t80379.T000008 pc1 6 Total carotenoid content Recombination analysis Near Isogenic Lines (NIL) F2 F23 NA 1 0 0 H05 0 0 10.1111/tpj.14305 NA NA t80379.T000009 Ft2.1 4 Flowering Time Composite Interval Mapping (CIM) Inbred lines F2 Marker6530388 NA 0 0 Marker6433087 0 0 5.12 10.1038/s41598-018-38370-0 NA NA t80379.T000010 Ft6.1 4 Flowering Time Composite Interval Mapping (CIM) Inbred lines F2 Marker3582600 NA 0 0 Marker3748750 0 0 2.96 10.1038/s41598-018-38370-0 NA NA t80379.T000011 Ft6.2 4 Flowering Time Composite Interval Mapping (CIM) Inbred lines F2 Marker3574378 NA 0 0 Marker370912 0 0 2.95 10.1038/s41598-018-38370-0 NA NA t80379.T000012 Ft2.1 4 Flowering Time Composite Interval Mapping (CIM) Inbred lines F2 Marker6530388 NA 0 0 Marker6448176 0 0 5.43 10.1038/s41598-018-38370-0 NA NA t80379.T000013 Ft6.1 4 Flowering Time Composite Interval Mapping (CIM) Inbred lines F2 Marker3566196 NA 0 0 Marker3484733 0 0 3.21 10.1038/s41598-018-38370-0 NA NA t80379.T000014 Ft6.2 4 Flowering Time Composite Interval Mapping (CIM) Inbred lines F2 Marker3784653 NA 0 0 Marker343103 0 0 2.48 10.1038/s41598-018-38370-0 NA NA t80379.T000015 Ft2.1 4 Flowering Time Composite Interval Mapping (CIM) Inbred lines F2 Marker6371227 NA 0 0 Marker6448176 0 0 4.92 10.1038/s41598-018-38370-0 NA NA t80379.T000016 Ft6.1 4 Flowering Time Composite Interval Mapping (CIM) Inbred lines F2 Marker3893018 NA 0 0 Marker3748750 0 0 2.45 10.1038/s41598-018-38370-0 NA NA t80379.T000017 Ft6.2 4 Flowering Time Composite Interval Mapping (CIM) Inbred lines F2 Marker3355152 NA 0 0 Marker396246 0 0 2.6 10.1038/s41598-018-38370-0 NA NA t80379.T000018 Ft2.1 4 Flowering Time Genome-wide Composite Interval M Inbred lines F2 Marker6371227 NA 0 0 Marker6371227 0 0 22.72 10.1038/s41598-018-38370-0 NA NA t80379.T000019 Ft6.1 4 Flowering Time Genome-wide Composite Interval M Inbred lines F2 Marker3686000 NA 0 0 Marker3360006 0 0 15.3 10.1038/s41598-018-38370-0 NA NA t80379.T000020 Ft6.2 4 Flowering Time Genome-wide Composite Interval M Inbred lines F2 Marker3784653 NA 0 0 Marker3727891 0 0 9.19 10.1038/s41598-018-38370-0 NA NA t80379.T000021 Ft2.1 4 Flowering Time Genome-wide Composite Interval M Inbred lines F2 Marker6448176 NA 0 0 Marker6448176 0 0 20.49 10.1038/s41598-018-38370-0 NA NA t80379.T000022 Ft6.1 4 Flowering Time Genome-wide Composite Interval M Inbred lines F2 Marker3566196 NA 0 0 Marker3566196 0 0 6.42 10.1038/s41598-018-38370-0 NA NA t80379.T000023 Ft6.2 4 Flowering Time Genome-wide Composite Interval M Inbred lines F2 Marker3784653 NA 0 0 Marker343103 0 0 8.01 10.1038/s41598-018-38370-0 NA NA t80379.T000024 Ft2.1 4 Flowering Time Genome-wide Composite Interval M Inbred lines F2 Marker6433087 NA 0 0 Marker6433087 0 0 12.7 10.1038/s41598-018-38370-0 NA NA t80379.T000025 Ft6.2 4 Flowering Time Genome-wide Composite Interval M Inbred lines F2 Marker3857068 NA 0 0 Marker3857068 0 0 5.16 10.1038/s41598-018-38370-0 NA NA t80379.T000026 Mf2.1 4 Flower number per node Genome-wide Composite Interval M Inbred lines F2 NA 0 0 0 0 10.1038/s41598-018-38370-0 NA NA t80379.T000027 Mf7.1 4 Flower number per node Genome-wide Composite Interval M Inbred lines F2 NA 0 0 0 0 10.1038/s41598-018-38370-0 NA NA t80379.T000028 Mf10.1 4 Flower number per node Genome-wide Composite Interval M Inbred lines F2 NA 0 0 0 0 10.1038/s41598-018-38370-0 NA NA t80379.T000029 Mf8.1 4 Flower number per node Genome-wide Composite Interval M Inbred lines F2 NA 0 0 0 0 10.1038/s41598-018-38370-0 NA NA t80379.T000030 Mf11.1 4 Flower number per node Genome-wide Composite Interval M Inbred lines F2 NA 0 0 0 0 10.1038/s41598-018-38370-0 NA NA t80379.T000031 HJ16-qtlseq 3 Total Capsaicinoid (TCP) QTL-seq Habanero X Jolokia (HJ) F3 NA 0 0 0 0 10.1007/s00122-018-3238-8 NA NA t80379.T000032 HJ16-dhc3 3 Dihydrocapsaicin (DHC) Windows QTL Cartographer 2.5 Habanero X Jolokia (HJ) F3 NA 0 0 0 0 18.9 - 25.9 6.2 10.1007/s00122-018-3238-8 NA NA t80379.T000033 HJ16-dhc6.1 3 Dihydrocapsaicin (DHC) Windows QTL Cartographer 2.5 Habanero X Jolokia (HJ) F3 NA 0 0 0 0 81.6 - 96.1 5.7 10.1007/s00122-018-3238-8 NA NA t80379.T000034 HJ16-dhc6.2 3 Dihydrocapsaicin (DHC) Windows QTL Cartographer 2.5 Habanero X Jolokia (HJ) F3 NA 0 0 0 0 96.1 - 101 4.7 10.1007/s00122-018-3238-8 NA NA t80379.T000035 HJ16-tcp6.1 3 Capsaicin (CAP)/ Total Capsaicinoid (TCP) Windows QTL Cartographer 2.5 Habanero X Jolokia (HJ) F3 NA 0 0 0 0 29 - 36.1 4.3 10.1007/s00122-018-3238-8 NA NA t80379.T000036 HJ16-tcp6.2 3 Capsaicin (CAP)/ Total Capsaicinoid (TCP) Windows QTL Cartographer 2.5 Habanero X Jolokia (HJ) F3 NA 0 0 0 0 36.1 - 42 5.2 10.1007/s00122-018-3238-8 NA NA t80379.T000037 HJ16-tcp6.3 3 Capsaicin (CAP)/ Total Capsaicinoid (TCP) Windows QTL Cartographer 2.5 Habanero X Jolokia (HJ) F3 NA 0 0 0 0 80.3 - 81.6 4.7 10.1007/s00122-018-3238-8 NA NA t80379.T000038 HJ16-tcp6.4 3 Capsaicin (CAP)/ Total Capsaicinoid (TCP) Windows QTL Cartographer 2.5 Habanero X Jolokia (HJ) F3 NA 0 0 0 0 85.7 - 87.4 6.5 10.1007/s00122-018-3238-8 NA NA t80379.T000039 HJ17-tcp6 3 Capsaicin (CAP)/ Total Capsaicinoid (TCP) Windows QTL Cartographer 2.5 Habanero X Jolokia (HJ) F3 NA 0 0 0 0 71.4 - 88.5 5.7 10.1007/s00122-018-3238-8 NA NA t80379.T000040 HJ17-tcp11 3 Capsaicin (CAP)/ Total Capsaicinoid (TCP) Windows QTL Cartographer 2.5 Habanero X Jolokia (HJ) F3 NA 0 0 0 0 15 - 23.6 4.3 10.1007/s00122-018-3238-8 NA NA t80379.T000041 HJ16-dhc3 3 Dihydrocapsaicin (DHC) MIM analysis Habanero X Jolokia (HJ) F3 NA 0 0 0 0 10.1007/s00122-018-3238-8 NA NA t80379.T000042 HJ16-dhc6.1 3 Dihydrocapsaicin (DHC) MIM analysis Habanero X Jolokia (HJ) F3 NA 0 0 0 0 10.1007/s00122-018-3238-8 NA NA t80379.T000043 HJ16-dhc3× HJ16-dhc6.1 3 Dihydrocapsaicin (DHC) MIM analysis Habanero X Jolokia (HJ) F3 NA 0 0 0 0 10.1007/s00122-018-3238-8 NA NA t80379.T000044 HJ17-tcp6 3 Dihydrocapsaicin (DHC) MIM analysis Habanero X Jolokia (HJ) F3 NA 0 0 0 0 10.1007/s00122-018-3238-8 NA NA t80379.T000045 HJ17-tcp11 3 Dihydrocapsaicin (DHC) MIM analysis Habanero X Jolokia (HJ) F3 NA 0 0 0 0 10.1007/s00122-018-3238-8 NA NA t80379.T000046 HJ17-tcp6× HJ17-tcp11 3 Dihydrocapsaicin (DHC) MIM analysis Habanero X Jolokia (HJ) F3 NA 0 0 0 0 10.1007/s00122-018-3238-8 NA NA t80379.T000047 SJ-cap6.1 3 Capsaicin (CAP) Windows QTL Cartographer 2.5 SNU11-001 X Jolokia (SJ) F2 NA 0 0 0 0 109.9 - 116.8 13.9 10.1007/s00122-018-3238-8 NA NA t80379.T000048 SJ-cap6.2 3 Capsaicin (CAP) Windows QTL Cartographer 2.5 SNU11-001 X Jolokia (SJ) F2 NA 0 0 0 0 119.6 - 127.1 11.9 10.1007/s00122-018-3238-8 NA NA t80379.T000049 SJ-dhc6.1 3 Dihydrocapsaicin (DHC) Windows QTL Cartographer 2.5 SNU11-001 X Jolokia (SJ) F2 NA 0 0 0 0 18.6 - 31.3 4.8 10.1007/s00122-018-3238-8 NA NA t80379.T000050 SJ-dhc6.2 3 Dihydrocapsaicin (DHC) Windows QTL Cartographer 2.5 SNU11-001 X Jolokia (SJ) F2 NA 0 0 0 0 90.1 - 94 8.2 10.1007/s00122-018-3238-8 NA NA t80379.T000051 SJ-dhc6.3 3 Dihydrocapsaicin (DHC) Windows QTL Cartographer 2.5 SNU11-001 X Jolokia (SJ) F2 NA 0 0 0 0 110 - 115.4 18.7 10.1007/s00122-018-3238-8 NA NA t80379.T000052 SJ-tcp6.1 3 Total Capsaicinoid (TCP) Windows QTL Cartographer 2.5 SNU11-001 X Jolokia (SJ) F2 NA 0 0 0 0 106.3 - 117.4 5.2 10.1007/s00122-018-3238-8 NA NA t80379.T000053 SJ-tcp6.2 3 Total Capsaicinoid (TCP) Windows QTL Cartographer 2.5 SNU11-001 X Jolokia (SJ) F2 NA 0 0 0 0 117.4 - 139.1 4.9 10.1007/s00122-018-3238-8 NA NA t80379.T000054 L3 1 FISH Analysis Intra-specific Population F2 A214 NA 11 0 0 YB2A25 0 0 10.1007/s00122-008-0848-6 NA NA