t3662.T000001 QtlZYMV-C02 1 Resistance to Zucchini Yellow Mosaic Virus (ZYMV) QTL-seq analysis Squash cultivars F2 NA 0 0 0 0 10.3390/plants10091935 NA NA t3662.T000002 QtlZYMV-C04 1 Resistance to Zucchini Yellow Mosaic Virus (ZYMV) QTL-seq analysis Squash cultivars F2 NA 0 0 0 0 10.3390/plants10091935 NA NA t3662.T000003 QtlZYMV-C08 1 Resistance to Zucchini Yellow Mosaic Virus (ZYMV) QTL-seq analysis Squash cultivars F2 NA 0 0 0 0 10.3390/plants10091935 NA NA t3662.T000004 QtlZYMV-C20 1 Resistance to Zucchini Yellow Mosaic Virus (ZYMV) QTL-seq analysis Squash cultivars F2 NA 0 0 0 0 10.3390/plants10091935 NA NA t3662.T000005 1 Resistance to Tomato Leaf Curl New Delhi Virus (ToLCNDV) NA 0 0 0 0 10.3389/fpls.2020.00207 NA NA t3662.T000006 ToLCNDVCm_Sy15-8 1 Symptoms at 15 dpi non-parametric Kruskal–Wallis te Segregating population F2 (PI 419083 x_x0002_PI 604506) D133 NA 0 0 0 0 0 10.3389/fpls.2020.00207 NA NA t3662.T000007 ToLCNDVCm_Sy30-8 1 Symptoms at 30 dpi non-parametric Kruskal–Wallis te Segregating population F2 (PI 419083 x_x0002_PI 604506) D133 NA 0 0 0 0 0 10.3389/fpls.2020.00207 NA NA t3662.T000008 ToLCNDVCm_VT30-8 1 Viral titer at 30 dpi (∆Ct) non-parametric Kruskal–Wallis te Segregating population F2 (PI 419083 x_x0002_PI 604506) D133 NA 0 0 0 0 0 10.3389/fpls.2020.00207 NA NA t3662.T000009 ToLCNDVCm_Re-8 1 Resistance (qualitative trait) non-parametric Kruskal–Wallis te Segregating population F2 (PI 419083 x_x0002_PI 604506) D133 NA 0 0 0 0 0 10.3389/fpls.2020.00207 NA NA t3662.T000010 ToLCNDVCm_Sy15-8 1 Symptoms at 15 dpi composite interval mapping Segregating population F2 (PI 419083 x_x0002_PI 604506) D133 NA 0 0 0 0 4 10.06 10.3389/fpls.2020.00207 NA NA t3662.T000011 ToLCNDVCm_Sy30-8 1 Symptoms at 30 dpi composite interval mapping Segregating population F2 (PI 419083 x_x0002_PI 604506) D133 NA 0 0 0 0 0 16.52 10.3389/fpls.2020.00207 NA NA t3662.T000012 ToLCNDVCm_VT30-8 1 Viral titer at 30 dpi (∆Ct) composite interval mapping Segregating population F2 (PI 419083 x_x0002_PI 604506) D133 NA 0 0 0 0 0 13.97 10.3389/fpls.2020.00207 NA NA t3662.T000013 ToLCNDVCm_Re-8 1 Resistance (qualitative trait) composite interval mapping Segregating population F2 (PI 419083 x_x0002_PI 604506) D133 NA 0 0 0 0 0 17.31 10.3389/fpls.2020.00207 NA NA t3662.T000014 ToLCNDVCm_Sy15-8 1 Symptoms 15 dpi non-parametric Kruskal–Wallis te Segregating population F2 (PI 419083 x_x0002_PI 604506) D133 NA 0 0 0 0 18.8 10.3389/fpls.2020.00207 NA NA t3662.T000015 ToLCNDVCm_Sy30-8 1 Symptoms 30 dpi non-parametric Kruskal–Wallis te Segregating population F2 (PI 419083 x_x0002_PI 604506) DMP39m NA 0 0 0 0 11.7 10.3389/fpls.2020.00207 NA NA t3662.T000016 ToLCNDVCm_VT30-8 1 Viral titer at 30 dpi (∆Ct) non-parametric Kruskal–Wallis te Segregating population F2 (PI 419083 x_x0002_PI 604506) DMP39m NA 0 0 0 0 11.7 10.3389/fpls.2020.00207 NA NA t3662.T000017 ToLCNDVCm_Re-8 1 Resistance (qualitative trait) non-parametric Kruskal–Wallis te Segregating population F2 (PI 419083 x_x0002_PI 604506) DMP39m NA 0 0 0 0 11.7 10.3389/fpls.2020.00207 NA NA t3662.T000018 ToLCNDVCm_Sy15-8 1 Symptoms 15 dpi composite interval mapping Segregating population F2 (PI 419083 x_x0002_PI 604506) D133 NA 0 0 0 0 18 9.96 10.3389/fpls.2020.00207 NA NA t3662.T000019 ToLCNDVCm_Sy30-8 1 Symptoms 30 dpi composite interval mapping Segregating population F2 (PI 419083 x_x0002_PI 604506) DMP39m NA 0 0 0 0 12 29.76 10.3389/fpls.2020.00207 NA NA t3662.T000020 ToLCNDVCm_VT30-8 1 Viral titer at 30 dpi (∆Ct) composite interval mapping Segregating population F2 (PI 419083 x_x0002_PI 604506) DMP39m NA 0 0 0 0 12 24.37 10.3389/fpls.2020.00207 NA NA t3662.T000021 ToLCNDVCm_Re-8 1 Resistance (qualitative trait) composite interval mapping Segregating population F2 (PI 419083 x_x0002_PI 604506) DMP39m NA 0 0 0 0 12 30.92 10.3389/fpls.2020.00207 NA NA t3662.T000022 ToLCNDVCm_Sy15-8 1 Symptoms 15 dpi non-parametric Kruskal–Wallis te Segregating population F2 (MU-CU-16 x_x0002_PI 604506) DMP39 NA 0 0 0 0 10.5 10.3389/fpls.2020.00207 NA NA t3662.T000023 ToLCNDVCm_Sy30-8 1 Symptoms 30 dpi non-parametric Kruskal–Wallis te Segregating population F2 (MU-CU-16 x_x0002_PI 604506) DMP39 NA 0 0 0 0 10.5 10.3389/fpls.2020.00207 NA NA t3662.T000024 ToLCNDVCm_VT30-8 1 Viral titer at 30 dpi (∆Ct) non-parametric Kruskal–Wallis te Segregating population F2 (MU-CU-16 x_x0002_PI 604506) snp_7926165 NA 0 0 0 0 8.3 10.3389/fpls.2020.00207 NA NA t3662.T000025 ToLCNDVCm_Re-8 1 Resistance (qualitative trait) non-parametric Kruskal–Wallis te Segregating population F2 (MU-CU-16 x_x0002_PI 604506) DMP35 NA 0 0 0 0 7.2 10.3389/fpls.2020.00207 NA NA t3662.T000026 ToLCNDVCm_Sy15-8 1 Symptoms 15 dpi composite interval mapping Segregating population F2 (MU-CU-16 x_x0002_PI 604506) DMP39 NA 0 0 0 0 10 40.57 10.3389/fpls.2020.00207 NA NA t3662.T000027 ToLCNDVCm_Sy30-8 1 Symptoms 30 dpi composite interval mapping Segregating population F2 (MU-CU-16 x_x0002_PI 604506) snp_7926165 NA 0 0 0 0 8 20.7 10.3389/fpls.2020.00207 NA NA t3662.T000028 ToLCNDVCm_VT30-8 1 Viral titer at 30 dpi (∆Ct) composite interval mapping Segregating population F2 (MU-CU-16 x_x0002_PI 604506) snp_7926165 NA 0 0 0 0 8 15.32 10.3389/fpls.2020.00207 NA NA t3662.T000029 ToLCNDVCm_Re-8 1 Resistance (qualitative trait) composite interval mapping Segregating population F2 (MU-CU-16 x_x0002_PI 604506) snp_7926165 NA 0 0 0 0 8 17.28 10.3389/fpls.2020.00207 NA NA t3662.T000030 QtlPC-C04 1 Resistance to Phytophthora crown rot QTL-seq analysis Breeding Lines F2 NA 0 0 0 0 10.1038/s41598-020-62228-z NA NA t3662.T000031 QtlPC-C11 1 Resistance to Phytophthora crown rot QTL-seq analysis Breeding Lines F2 NA 0 0 0 0 10.1038/s41598-020-62228-z NA NA t3662.T000032 QtlPC-C14 1 Resistance to Phytophthora crown rot QTL-seq analysis Breeding Lines F2 NA 0 0 0 0 10.1038/s41598-020-62228-z NA NA t3662.T000033 qpc8-a 4 Pericarp color MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F2 NA 0 0 0 0 81.13 - 95.37 84.58 10.1038/s41598-017-13216-3 NA NA t3662.T000034 qps8-a 4 Pericarp stripe MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F3 NA 0 0 0 0 84.76 - 89.26 71.57 10.1038/s41598-017-13216-3 NA NA t3662.T000035 qlut8-a 5 Lutein MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F4 NA 0 0 0 0 73.39 - 81.13 4.53 10.1038/s41598-017-13216-3 NA NA t3662.T000036 qlut8-b 5 Lutein MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F5 NA 0 0 0 0 89.26 - 91.63 3.58 10.1038/s41598-017-13216-3 NA NA t3662.T000037 qlut11-a 5 Lutein MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F6 NA 0 0 0 0 68.52 - 74.14 6.84 10.1038/s41598-017-13216-3 NA NA t3662.T000038 qlut11-b 5 Lutein MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F7 NA 0 0 0 0 93.62 - 93.71 3.11 10.1038/s41598-017-13216-3 NA NA t3662.T000039 qlut20-a 5 Lutein MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F8 NA 0 0 0 0 0 - 13.69 8.14 10.1038/s41598-017-13216-3 NA NA t3662.T000040 qαcr8-a 5 α-carotene MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F9 NA 0 0 0 0 7.12 - 7.68 3.67 10.1038/s41598-017-13216-3 NA NA t3662.T000041 qαcr17-a 5 α-carotene MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F10 NA 0 0 0 0 50.85 - 64.24 5.78 10.1038/s41598-017-13216-3 NA NA t3662.T000042 qβcr11-a 5 β-carotene MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F11 NA 0 0 0 0 83.17 - 89.73 4.97 10.1038/s41598-017-13216-3 NA NA t3662.T000043 qβcr15-a 5 β-carotene MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F12 NA 0 0 0 0 47.07 - 47.58 3.02 10.1038/s41598-017-13216-3 NA NA t3662.T000044 qβcr20-a 5 β-carotene MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F13 NA 0 0 0 0 0 - 14.61 7.45 10.1038/s41598-017-13216-3 NA NA t3662.T000045 qcar8-a 5 Total carotenoids MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F14 NA 0 0 0 0 78.71 - 81.13 3.89 10.1038/s41598-017-13216-3 NA NA t3662.T000046 qcar11-a 5 Total carotenoids MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F15 NA 0 0 0 0 68.52 - 74.6 5.19 10.1038/s41598-017-13216-3 NA NA t3662.T000047 qcar11-b 5 Total carotenoids MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F16 NA 0 0 0 0 84.41 - 89.73 4.31 10.1038/s41598-017-13216-3 NA NA t3662.T000048 qcar20-a 5 Total carotenoids MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F17 NA 0 0 0 0 0 - 13.69 9.29 10.1038/s41598-017-13216-3 NA NA t3662.T000049 qglu19-a 5 Glucose MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F18 NA 0 0 0 0 140.1 - 140.9 3.29 10.1038/s41598-017-13216-3 NA NA t3662.T000050 qsuc10-a 5 Sucrose MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F19 NA 0 0 0 0 95.07 - 95.19 3.31 10.1038/s41598-017-13216-3 NA NA t3662.T000051 qs/g19-a 5 Sucrose/glucose MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F20 NA 0 0 0 0 107.67 - 120.3 3.64 10.1038/s41598-017-13216-3 NA NA t3662.T000052 qtf8-a 4 Tuberculate fruit MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F21 NA 0 0 0 0 120.37 - 132.95 5.9 10.1038/s41598-017-13216-3 NA NA t3662.T000053 qtf11-a 4 Tuberculate fruit MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F22 NA 0 0 0 0 67.75 - 75.62 4.23 10.1038/s41598-017-13216-3 NA NA t3662.T000054 qfh8-a 4 Fruit hollow MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F23 NA 0 0 0 0 104.18 - 105.33 3.51 10.1038/s41598-017-13216-3 NA NA t3662.T000055 qfh11-a 4 Fruit hollow MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F24 NA 0 0 0 0 58.4 - 76.7 5.95 10.1038/s41598-017-13216-3 NA NA t3662.T000056 qfd8-a 4 Fruit diameter MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F25 NA 0 0 0 0 86.26 - 96.91 6.75 10.1038/s41598-017-13216-3 NA NA t3662.T000057 qfd13-a 4 Fruit diameter MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F26 NA 0 0 0 0 13.29 - 20.91 3.79 10.1038/s41598-017-13216-3 NA NA t3662.T000058 qpt8-a 4 Pulp thickness MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F27 NA 0 0 0 0 89.26 - 96.91 5.29 10.1038/s41598-017-13216-3 NA NA t3662.T000059 qpt8-b 4 Pulp thickness MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F28 NA 0 0 0 0 115.92 - 117.27 3.48 10.1038/s41598-017-13216-3 NA NA t3662.T000060 qpt9-a 4 Pulp thickness MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F29 NA 0 0 0 0 51.04 - 52.41 4.6 10.1038/s41598-017-13216-3 NA NA t3662.T000061 qcw8-a 4 Chamber width MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F30 NA 0 0 0 0 73.39 - 84.76 3.88 10.1038/s41598-017-13216-3 NA NA t3662.T000062 qcw8-b 4 Chamber width MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F31 NA 0 0 0 0 87.81 - 94.9 3.89 10.1038/s41598-017-13216-3 NA NA t3662.T000063 qcw13-a 4 Chamber width MapQTL 5.0 with Multiple QTL Map C. moschata Inbred Lines F32 NA 0 0 0 0 14.2 - 17.24 3.25 10.1038/s41598-017-13216-3 NA NA t3662.T000064 1 Powdery Mildew Resistance Introgression Mapping & Associat C. pepo Accessions & cultivars NA 0 0 0 0 10.1371/journal.pone.0167715 NA NA t3662.T000065 1 Powdery Mildew Resistance Introgression Mapping & Associat C.moschata Accessions & cultivars NA 0 0 0 0 10.1371/journal.pone.0167715 NA NA t3662.T000066 1 Powdery Mildew Resistance Introgression Mapping & Associat C. okeechobeensis subsp. martinezii PI 532363 Accessions & cultivars NA 0 0 0 0 10.1371/journal.pone.0167715 NA NA t3662.T000067 5 n (hull-less or naked seeds) JoinMap and MAPMAKER C. moschata F2 NA 0 0 0 0 10.1139/G08-072 NA NA t3662.T000068 4 Gr (Green rind) JoinMap and MAPMAKER C. moschata F2 NA 0 0 0 0 10.1139/G08-072 NA NA t3662.T000069 1 Resistance to tomato leaf curl New Delhi virus QTL mapping PI 419083 × PI 604506 F2 D133 NA 0 0 0 0 18.8 10.3389/fpls.2020.00207 NA NA t3662.T000070 1 Resistance to tomato leaf curl New Delhi virus QTL mapping PI 419083 × PI 604506 F2 DMP39m NA 0 0 0 0 11.7 10.3389/fpls.2020.00207 NA NA t3662.T000071 1 Resistance to tomato leaf curl New Delhi virus QTL mapping PI 419083 × PI 604506 F2 DMP39m NA 0 0 0 0 11.7 10.3389/fpls.2020.00207 NA NA t3662.T000072 1 Resistance to tomato leaf curl New Delhi virus QTL mapping PI 419083 × PI 604506 F2 DMP39m NA 0 0 0 0 11.7 10.3389/fpls.2020.00207 NA NA t3662.T000073 1 Resistance to tomato leaf curl New Delhi virus Interval mapping PI 419083 × PI 604506 F2 D133 NA 0 0 0 0 4.53–24.00 9.96 10.3389/fpls.2020.00207 NA NA t3662.T000074 1 Resistance to tomato leaf curl New Delhi virus Interval mapping PI 419083 × PI 604506 F2 DMP39 NA 0 0 0 0 8.01–13.46 29.76 10.3389/fpls.2020.00207 NA NA t3662.T000075 1 Resistance to tomato leaf curl New Delhi virus Interval mapping PI 419083 × PI 604506 F2 DMP39 NA 0 0 0 0 10.85–14.15 24.37 10.3389/fpls.2020.00207 NA NA t3662.T000076 1 Resistance to tomato leaf curl New Delhi virus Interval mapping PI 419083 × PI 604506 F2 DMP39 NA 0 0 0 0 8.13–13.83 30.92 10.3389/fpls.2020.00207 NA NA t3662.T000077 1 Resistance to tomato leaf curl New Delhi virus QTL mapping MU-CU-16 × PI 604506 F2 DMP39 NA 0 0 0 0 10.5 10.3389/fpls.2020.00207 NA NA t3662.T000078 1 Resistance to tomato leaf curl New Delhi virus QTL mapping MU-CU-16 × PI 604506 F2 DMP39 NA 0 0 0 0 10.5 10.3389/fpls.2020.00207 NA NA t3662.T000079 1 Resistance to tomato leaf curl New Delhi virus QTL mapping MU-CU-16 × PI 604506 F2 snp_7926165 NA 0 0 0 0 8.3 10.3389/fpls.2020.00207 NA NA t3662.T000080 1 Resistance to tomato leaf curl New Delhi virus QTL mapping MU-CU-16 × PI 604506 F2 DMP35 NA 0 0 0 0 7.2 10.3389/fpls.2020.00207 NA NA t3662.T000081 1 Resistance to tomato leaf curl New Delhi virus Interval mapping MU-CU-16 × PI 604506 F2 DMP39 NA 0 0 0 0 8.22–10.70 40.57 10.3389/fpls.2020.00207 NA NA t3662.T000082 1 Resistance to tomato leaf curl New Delhi virus Interval mapping MU-CU-16 × PI 604506 F2 snp_7926165 NA 0 0 0 0 6.98–11.32 20.7 10.3389/fpls.2020.00207 NA NA t3662.T000083 1 Resistance to tomato leaf curl New Delhi virus Interval mapping MU-CU-16 × PI 604506 F2 snp_7926165 NA 0 0 0 0 6.57–11.62 15.32 10.3389/fpls.2020.00207 NA NA t3662.T000084 1 Resistance to tomato leaf curl New Delhi virus Interval mapping MU-CU-16 × PI 604506 F2 snp_7926165 NA 0 0 0 0 6.92–11.33 17.28 10.3389/fpls.2020.00207 NA NA