t3750.T000001 A1 6 Butanol QTL analysis C3 (Discovery x Prima) F1 E37M62-8 NA NA 0 0 NA 0 0 15.1 10.33 10.1007/s11032-008-9252-9 NA NA t3750.T000002 A1 6 Butanol QTL analysis C3 (Discovery x Prima) F1 E39M51-15 NA NA 0 0 NA 0 0 40.9 4.6 10.1007/s11032-008-9252-9 NA NA t3750.T000003 A2 6 Heptanol QTL analysis C3 (Discovery x Prima) F1 E43M54-12 NA NA 0 0 NA 0 0 6 4 10.1007/s11032-008-9252-9 NA NA t3750.T000004 A3 6 Hexanol QTL analysis C3 (Discovery x Prima) F1 E33M53-14 NA NA 0 0 NA 0 0 1 3.68 10.1007/s11032-008-9252-9 NA NA t3750.T000005 A3 6 Hexanol QTL analysis C3 (Discovery x Prima) F1 E37M62-8 NA NA 0 0 NA 0 0 17.1 6.96 10.1007/s11032-008-9252-9 NA NA t3750.T000006 A4 6 Iso-pentanol QTL analysis C3 (Discovery x Prima) F1 E32M59-6 NA NA 0 0 NA 0 0 8.3 4.38 10.1007/s11032-008-9252-9 NA NA t3750.T000007 A4 6 Iso-pentanol QTL analysis C3 (Discovery x Prima) F1 E34M58-5 NA NA 0 0 NA 0 0 52.6 3.5 10.1007/s11032-008-9252-9 NA NA t3750.T000008 A4 6 Iso-pentanol QTL analysis C3 (Discovery x Prima) F1 E33M53-17 NA NA 0 0 NA 0 0 11.9 5.36 10.1007/s11032-008-9252-9 NA NA t3750.T000009 A5 6 3-Octanol QTL analysis C3 (Discovery x Prima) F1 E37M62-8 NA NA 0 0 NA 0 0 18.1 7.22 10.1007/s11032-008-9252-9 NA NA t3750.T000010 A6 6 Pentanol QTL analysis C3 (Discovery x Prima) F1 E34M58-5 NA NA 0 0 NA 0 0 52.6 8.08 10.1007/s11032-008-9252-9 NA NA t3750.T000011 E1 6 Butyl acetate QTL analysis C3 (Discovery x Prima) F1 E37M48-4 NA NA 0 0 NA 0 0 13.1 3.59 10.1007/s11032-008-9252-9 NA NA t3750.T000012 E1 6 Butyl acetate QTL analysis C3 (Discovery x Prima) F1 E33M53-17 NA NA 0 0 NA 0 0 11 7.24 10.1007/s11032-008-9252-9 NA NA t3750.T000013 E10 6 Propyl acetate QTL analysis C3 (Discovery x Prima) F1 E39M59-6 NA NA 0 0 NA 0 0 16.8 6.03 10.1007/s11032-008-9252-9 NA NA t3750.T000014 E10 6 Propyl acetate QTL analysis C3 (Discovery x Prima) F1 CH05c07 GDDH13v1.1 Chr09 12354298 12354435 NA 0 0 13.6 3.71 10.1007/s11032-008-9252-9 t3750.M000167.1 NA t3750.T000015 E11 6 Propyl hexanoate QTL analysis C3 (Discovery x Prima) F1 E45M52-2 NA NA 0 0 NA 0 0 0 5.39 10.1007/s11032-008-9252-9 NA NA t3750.T000016 E2 6 Butyl butanoate QTL analysis C3 (Discovery x Prima) F1 CN444794 NA NA 0 0 NA 0 0 1 4.07 10.1007/s11032-008-9252-9 NA NA t3750.T000017 E2 6 Butyl butanoate QTL analysis C3 (Discovery x Prima) F1 E33M47-3 NA NA 0 0 NA 0 0 23.1 4.02 10.1007/s11032-008-9252-9 NA NA t3750.T000018 E3 6 Butyl 2-methyl butanoate QTL analysis C3 (Discovery x Prima) F1 E45M51-11 NA NA 0 0 NA 0 0 23.9 3.5 10.1007/s11032-008-9252-9 NA NA t3750.T000019 E6 6 Hexyl butanoate QTL analysis C3 (Discovery x Prima) F1 E32M59-10 NA NA 0 0 NA 0 0 15.8 4.15 10.1007/s11032-008-9252-9 NA NA t3750.T000020 E6 6 Hexyl butanoate QTL analysis C3 (Discovery x Prima) F1 E37M62-8 NA NA 0 0 NA 0 0 15.1 8.85 10.1007/s11032-008-9252-9 NA NA t3750.T000021 E7 6 Hexyl hexanoate 2-Methyl butyl acetate QTL analysis C3 (Discovery x Prima) F1 E37M62-8 NA NA 0 0 NA 0 0 15.1 9.2 10.1007/s11032-008-9252-9 NA NA t3750.T000022 E7 6 Hexyl hexanoate 2-Methyl butyl acetate QTL analysis C3 (Discovery x Prima) F1 E45M51-11 NA NA 0 0 NA 0 0 18.8 3.58 10.1007/s11032-008-9252-9 NA NA t3750.T000023 E9 6 Pentyl acetate QTL analysis C3 (Discovery x Prima) F1 E33M53-17 NA NA 0 0 NA 0 0 16.8 6.03 10.1007/s11032-008-9252-9 NA NA t3750.T000024 M1 6 Allylanisol QTL analysis C3 (Discovery x Prima) F1 E32M58-7 NA NA 0 0 NA 0 0 70.3 6.66 10.1007/s11032-008-9252-9 NA NA t3750.T000025 M1 6 Allylanisol QTL analysis C3 (Discovery x Prima) F1 E43M54-15 NA NA 0 0 NA 0 0 28 6.11 10.1007/s11032-008-9252-9 NA NA t3750.T000026 M1 6 Allylanisol QTL analysis C3 (Discovery x Prima) F1 E45M53-1 NA NA 0 0 NA 0 0 85.8 5.36 10.1007/s11032-008-9252-9 NA NA t3750.T000027 T1 6 a-Farnesene QTL analysis C3 (Discovery x Prima) F1 E37M62-8 NA NA 0 0 NA 0 0 17.1 3.62 10.1007/s11032-008-9252-9 NA NA t3750.T000028 T1 6 a-Farnesene QTL analysis C3 (Discovery x Prima) F1 E45M53-13 NA NA 0 0 NA 0 0 60 4.22 10.1007/s11032-008-9252-9 NA NA t3750.T000029 T1 6 a-Farnesene QTL analysis C3 (Discovery x Prima) F1 E36M48-2 NA NA 0 0 NA 0 0 86.1 6.51 10.1007/s11032-008-9252-9 NA NA t3750.T000030 T1 6 a-Farnesene QTL analysis C3 (Discovery x Prima) F1 E32M59-12 NA NA 0 0 NA 0 0 55.1 4.43 10.1007/s11032-008-9252-9 NA NA t3750.T000031 6 PL1 (%), Fire blight resistance/susceptibility, 7dai QTL analysis Co-op 16 x Co-op 17 F1 CH05e03-1 NA NA 0 0 NA 0 0 63.5 3.05 10.1111/ppl.12068 NA NA t3750.T000032 6 PL2 (%), Fire blight resistance/susceptibility, 14 dai QTL analysis Co-op 16 x Co-op 17 F1 MdSNPui09422 NA NA 0 0 NA 0 0 59.5 3.66 10.1111/ppl.12068 NA NA t3750.T000033 6 Shoot length, Shoot length (cm) QTL analysis Co-op 16 x Co-op 17 F1 MdSNPui09107 NA NA 0 0 NA 0 0 0 2.53 10.1111/ppl.12068 NA NA t3750.T000034 6 Shoot length, Shoot length (cm) QTL analysis Co-op 16 x Co-op 17 F1 CH03g06 GDDH13v1.1 Chr14 28718216 28718352 NA 0 0 68.2 2.84 10.1111/ppl.12068 t3750.M000125.1 NA t3750.T000035 6 PL1 (%), Fire blight resistance/susceptibility, 7dai QTL analysis Co-op 16 x Co-op 17 F1 MdSNPui07111 NA NA 0 0 NA 0 0 4.5 4.06 10.1111/ppl.12068 NA NA t3750.T000036 6 Shoot length, Shoot length (cm) QTL analysis Co-op 16 x Co-op 17 F1 CTG1067449 NA NA 0 0 NA 0 0 75.4 4 10.1111/ppl.12068 NA NA t3750.T000037 6 powdery mildew resistance QTL analysis Discovery x TN10-8 (D x T) F1 NA NA 0 0 NA 0 0 31.4 3 10.1007/s11032-006-9004-7 NA NA t3750.T000038 6 powdery mildew resistance QTL analysis Discovery x TN10-8 (D x T) F1 E35M47-6_T NA NA 0 0 NA 0 0 12 9.01 10.1007/s11032-006-9004-7 NA NA t3750.T000039 6 powdery mildew resistance QTL analysis Discovery x TN10-8 (D x T) F1 E33TM50-6_T NA NA 0 0 NA 0 0 17.3 8.45 10.1007/s11032-006-9004-7 NA NA t3750.T000040 6 powdery mildew resistance QTL analysis Discovery x TN10-8 (D x T) F1 CH02a08_DT NA NA 0 0 NA 0 0 20.4 4.02 10.1007/s11032-006-9004-7 NA NA t3750.T000041 6 powdery mildew resistance QTL analysis Discovery x TN10-8 (D x T) F1 CH02g01_DT NA NA 0 0 NA 0 0 34.7 9.73 10.1007/s11032-006-9004-7 NA NA t3750.T000042 6 powdery mildew resistance QTL analysis Discovery x TN10-8 (D x T) F1 CH05g11_DT NA NA 0 0 NA 0 0 37.7 3.45 10.1007/s11032-006-9004-7 NA NA t3750.T000043 6 powdery mildew resistance QTL analysis Discovery x TN10-8 (D x T) F1 E33M62-9_T NA NA 0 0 NA 0 0 61.7 4.64 10.1007/s11032-006-9004-7 NA NA t3750.T000044 6 scab resistance (Isolate MLI) QTL analysis Discovery x TN10-8 F1 PGM-1 NA NA 0 0 NA 0 0 47.4 26.59 10.1094/PHYTO.2004.94.4.370 NA NA t3750.T000045 6 scab resistance (Isolate EU-NL24) QTL analysis Discovery x TN10-8 F1 CH05e03 GDDH13v1.1 Chr02 30748642 30748820 NA 0 0 58.3 12.6 10.1094/PHYTO.2004.94.4.370 t3750.M000173.1 NA t3750.T000046 6 scab resistance (Isolate EU-B04) QTL analysis Discovery x TN10-8 F1 CH04e03 GDDH13v1.1 Chr05 2266738 2266936 NA 0 0 102.6 12.57 10.1094/PHYTO.2004.94.4.370 t3750.M000143.1 NA t3750.T000047 6 scab resistance (Isolate 1066) QTL analysis Discovery x TN10-8 F1 Vg NA NA 0 0 NA 0 0 70.7 62.81 10.1094/PHYTO.2004.94.4.370 NA NA t3750.T000048 6 scab resistance (Isolate EU-B04) QTL analysis Discovery x TN10-8 F1 E32AM58-23 NA NA 0 0 NA 0 0 23.4 3.54 10.1094/PHYTO.2004.94.4.370 NA NA t3750.T000049 6 scab resistance (Isolate EU-NL24) QTL analysis Discovery x TN10-8 F1 E32AM59-1 NA NA 0 0 NA 0 0 24.7 3.8 10.1094/PHYTO.2004.94.4.370 NA NA t3750.T000050 6 scab resistance (Isolate 104) QTL analysis Discovery x TN10-8 F1 E32AM48-17 NA NA 0 0 NA 0 0 35.5 7.12 10.1094/PHYTO.2004.94.4.370 NA NA t3750.T000051 6 fire blight resistance QTL analysis Fiesta x Discovery (F x D) F1 E32M50-141-12 NA NA 0 0 NA 0 0 0 3.57 10.1007/s00122-005-2002-z NA NA t3750.T000052 6 fire blight resistance QTL analysis Fiesta x Discovery (F x D) F1 GE80-19-0550 NA NA 0 0 NA 0 0 52.7 26.82 10.1007/s00122-005-2002-z NA NA t3750.T000053 6 fire blight resistance QTL analysis Fiesta x Discovery (F x D) F1 CH01d03 NA NA 0 0 NA 0 0 62.3 3.53 10.1007/s00122-005-2002-z t3750.M000051.1 NA t3750.T000054 6 fire blight resistance QTL analysis Fiesta x Discovery (F x D) F1 E34M62-104-15 NA NA 0 0 NA 0 0 10.2 4.87 10.1007/s00122-005-2002-z NA NA t3750.T000055 6 20 DAI, 20 days after inoculation QTL analysis Fiesta x Discovery F1 E37M40-0400 NA NA 0 0 NA 0 0 50.1 8.1 10.1007/s11032-006-9000-y NA NA t3750.T000056 6 Stem diameter_replicates_2001 QTL analysis Fiesta x Discovery F1 NA NA 0 0 NA 0 0 6.1 10.1023/A:1024886500979 NA NA t3750.T000057 6 m/z 115, PTR-MS spectral features (m/z) QTL analysis Fiesta x Discovery F1 NA NA 0 0 NA 0 0 10.3 4.1 10.1007/s10681-005-1645-9 NA NA t3750.T000058 6 m/z 61, Compound related to Ester (the volatile organic compounds (VOCs) forming the aroma) QTL analysis Fiesta x Discovery F1 Ch02f06 GDDH13v1.1 Chr02 2087045 2087187 NA 0 0 12.01 10.1016/j.plantsci.2013.05.018 t3750.M000095.1 NA t3750.T000059 6 m/z 43, PTR-MS spectral features (m/z) QTL analysis Fiesta x Discovery F1 NA NA 0 0 NA 0 0 0 2.9 10.1007/s10681-005-1645-9 NA NA t3750.T000060 6 FFF (Fruit flesh firmness) QTL analysis Fiesta x Discovery F1 NA NA 0 0 NA 0 0 84 16.8 10.1023/A:1024886500979 NA NA t3750.T000061 6 m/z 145, PTR-MS spectral features (m/z) QTL analysis Fiesta x Discovery F1 NA NA 0 0 NA 0 0 7.9 2.8 10.1007/s10681-005-1645-9 NA NA t3750.T000062 6 FFF (Fruit flesh firmness) QTL analysis Fiesta x Discovery F1 NA NA 0 0 NA 0 0 6.5 10.1023/A:1024886500979 NA NA t3750.T000063 6 Flowering time QTL analysis Fiesta x Discovery F1 NA NA 0 0 NA 0 0 3.6 10.1023/A:1024886500979 NA NA t3750.T000064 6 Fruit acidity QTL analysis Fiesta x Discovery F1 NA NA 0 0 NA 0 0 32 4.8 10.1023/A:1024886500979 NA NA t3750.T000065 6 Sugar content QTL analysis Fiesta x Discovery F1 NA NA 0 0 NA 0 0 4.8 10.1023/A:1024886500979 NA NA t3750.T000066 6 Fruit weight QTL analysis Fiesta x Discovery F1 NA NA 0 0 NA 0 0 3.3 10.1023/A:1024886500979 NA NA t3750.T000067 6 Leaf scab resistance QTL analysis Fiesta x Discovery F1 NA NA 0 0 NA 0 0 17 - 10.1094/PHYTO.2003.93.4.493 NA NA t3750.T000068 6 Fruit weight QTL analysis Fiesta x Discovery F1 NA NA 0 0 NA 0 0 3.8 10.1023/A:1024886500979 NA NA t3750.T000069 6 Height increment_replicates_1999 QTL analysis Fiesta x Discovery F1 NA NA 0 0 NA 0 0 3.7 10.1023/A:1024886500979 NA NA t3750.T000070 6 Sugar content QTL analysis Fiesta x Discovery F1 NA NA 0 0 NA 0 0 4.5 10.1023/A:1024886500979 NA NA t3750.T000071 6 m/z 28, Compound related to hormone Ethylene (the volatile organic compounds (VOCs) forming the aroma), Md-ACS1 (1-aminocyclopropane-1-carboxylate synthase gene family) QTL analysis Fiesta x Discovery F1 CH03b10 GDDH13v1.1 Chr15 41174366 41174470 NA 0 0 8.53 10.1016/j.plantsci.2013.05.018 t3750.M000109.1 NA t3750.T000072 6 m/z 28, PTR-MS spectral features (m/z) QTL analysis Fiesta x Discovery F1 NA NA 0 0 NA 0 0 11.6 4.1 10.1007/s10681-005-1645-9 NA NA t3750.T000073 6 Fruit weight QTL analysis Fiesta x Discovery F1 NA NA 0 0 NA 0 0 17 10.1023/A:1024886500979 NA NA t3750.T000074 6 Leaf scab resistance QTL analysis Fiesta x Discovery F1 NA NA 0 0 NA 0 0 13.2 10.1094/PHYTO.2003.93.4.493 NA NA t3750.T000075 6 No force peaks QTL analysis Fj x Del Full-sib Hi02b10 NA NA 0 0 NA 0 0 4.02 10.1093/jxb/err326 t3750.M019226.1 NA t3750.T000076 6 Final force QTL analysis Fj x Del Full-sib GDsnp02834 NA NA 0 0 NA 0 0 5.99 10.1093/jxb/err326 NA NA t3750.T000077 6 force QTL analysis Fj x Del Full-sib GDsnp00166 NA NA 0 0 NA 0 0 4.03 10.1093/jxb/err326 NA NA t3750.T000078 6 Max acoustic pressure QTL analysis Fj x Del Full-sib Md-PG1-SSR NA NA 0 0 NA 0 0 9.85 10.1093/jxb/err326 NA NA t3750.T000079 6 Max force QTL analysis Fj x Del Full-sib GDsnp01984 NA NA 0 0 NA 0 0 4.51 10.1093/jxb/err326 NA NA t3750.T000080 6 Young's modulus QTL analysis Fj x Del Full-sib Md-Le-MADS NA NA 0 0 NA 0 0 4.41 10.1093/jxb/err326 NA NA t3750.T000081 6 Acoustic linear Distance QTL analysis Fj x Del Full-sib GDsnp01687 NA NA 0 0 NA 0 0 5.83 10.1093/jxb/err326 NA NA t3750.T000082 6 Force linear distance QTL analysis Fj x Del Full-sib GDsnp00200 NA NA 0 0 NA 0 0 4.63 10.1093/jxb/err326 NA NA t3750.T000083 6 Forve index QTL analysis Fj x Del Full-sib GDsnp00328 NA NA 0 0 NA 0 0 4.64 10.1093/jxb/err326 NA NA t3750.T000084 6 fruit firmness after 30 days of shelf life, Md-PG1 (polygalacturonase) QTL analysis Fj x MG Full-sib Md-PG1 NA NA 0 0 NA 0 0 2.62 10.1093/jxb/erq130 NA NA t3750.T000085 6 force QTL analysis Fj x PL Full-sib GDsnp01035 NA NA 0 0 NA 0 0 3.96 10.1093/jxb/err326 NA NA t3750.T000086 6 Young's modulus QTL analysis Fj x PL Full-sib GDsnp01969 NA NA 0 0 NA 0 0 4.62 10.1093/jxb/err326 NA NA t3750.T000087 6 force QTL analysis Fj x PL Full-sib GDsnp00247 NA NA 0 0 NA 0 0 4.01 10.1093/jxb/err326 NA NA t3750.T000088 6 Final force QTL analysis Fj x PL Full-sib GDsnp01598 NA NA 0 0 NA 0 0 3.75 10.1093/jxb/err326 NA NA t3750.T000089 6 No force peaks QTL analysis Fj x PL Full-sib GDsnp00747 NA NA 0 0 NA 0 0 4.67 10.1093/jxb/err326 NA NA t3750.T000090 6 Final force QTL analysis Fj x PL Full-sib GDsnp00444 NA NA 0 0 NA 0 0 6.68 10.1093/jxb/err326 NA NA t3750.T000091 6 log10(PLL2) (percent lesion length), fire blight resistance QTL analysis Florina x Nova Easygro F1 E31M41-351 NA NA 0 0 NA 0 0 34.8 2.35 10.1139/g10-047 NA NA t3750.T000092 6 log10(PLL1) (percent lesion length), fire blight resistance QTL analysis Florina x Nova Easygro F1 E31M33-493 NA NA 0 0 NA 0 0 37.5 1.91 10.1139/g10-047 NA NA t3750.T000093 6 log10(PLL1) (percent lesion length), fire blight resistance QTL analysis Florina x Nova Easygro F1 E31M44-368 NA NA 0 0 NA 0 0 30.9 3.26 10.1139/g10-047 NA NA t3750.T000094 6 fruit juice browning QTL analysis Fuji x Maypole F1 NH026a NA NA 0 0 NA 0 0 17.13 10.5376/tgmb.2014.04.0002 NA NA t3750.T000095 6 apple scab resistance QTL analysis Ga x DR F1 HB09-SSR NA NA 0 0 NA 0 0 4 7.42 10.1139/G08-046 t3750.M000785.1 NA t3750.T000096 6 apple scab resistance QTL analysis Ga x DR F1 CH04h02 GDDH13v1.1 Chr11 336821 337046 NA 0 0 0 13.69 10.1139/G08-046 t3750.M000157.1 NA t3750.T000097 6 apple scab resistance QTL analysis Ga x DR F1 CH01h01 GDDH13v1.1 Chr17 6515808 6515928 NA 0 0 16.6 11.32 10.1139/G08-046 t3750.M000066.1 NA t3750.T000098 6 14 dpi, length of stem necrosis at 14 days postinoculation QTL analysis GD x Mf F1 Hi07f01 NA NA 0 0 NA 0 0 23.3 13.7 10.1139/G08-111 t3750.M000720.1 NA t3750.T000099 M2 (pH) 6 pH QTL analysis GMAL 4595 interspecific half-sib C12360 GDDH13v1.1 Chr06 575580 575853 NA 0 0 2.8 1.59 10.1007/s11032-011-9674-7 t3750.M019399.1 NA t3750.T000100 M2 (pH) 6 pH QTL analysis GMAL 4595 interspecific half-sib CH02a03 GDDH13v1.1 Chr16 2427674 2427829 CH05c06 Chr16 3896699 3896818 9.7 10.35 10.1007/s11032-011-9674-7 t3750.M000070.1 t3750.M000166.1 t3750.T000101 M2 (TA) 6 TA QTL analysis GMAL 4595 interspecific half-sib C12360 GDDH13v1.1 Chr06 575580 575853 NA 0 0 2.8 2.32 10.1007/s11032-011-9674-7 t3750.M019399.1 NA t3750.T000102 M2 (TA) 6 TA QTL analysis GMAL 4595 interspecific half-sib CH02a03 GDDH13v1.1 Chr16 2427674 2427829 CH05c06 Chr16 3896699 3896818 10.7 6.13 10.1007/s11032-011-9674-7 t3750.M000070.1 t3750.M000166.1 t3750.T000103 M3 (pH) 6 pH QTL analysis GMAL 4595 interspecific half-sib C12063 GDDH13v1.1 Chr01 15828946 15829497 NA 0 0 13.6 0.8 10.1007/s11032-011-9674-7 t3750.M019393.1 NA t3750.T000104 M3 (TA) 6 TA QTL analysis GMAL 4595 interspecific half-sib C12063 GDDH13v1.1 Chr01 15828946 15829497 NA 0 0 13.6 1.59 10.1007/s11032-011-9674-7 t3750.M019393.1 NA t3750.T000105 Ma (pH) 6 pH QTL analysis GMAL 4595 interspecific half-sib CH05c06 GDDH13v1.1 Chr16 3896699 3896818 C13393 Chr16 12604008 12604198 2 18.34 10.1007/s11032-011-9674-7 t3750.M000166.1 t3750.M019420.1 t3750.T000106 Ma (TA) 6 TA QTL analysis GMAL 4595 interspecific half-sib CH05c06 GDDH13v1.1 Chr16 3896699 3896818 NA 0 0 0 19.82 10.1007/s11032-011-9674-7 t3750.M000166.1 NA t3750.T000107 6 percentage russeting, percentage of russeting (severe failure of formation in fruit cuticle) QTL analysis Golden Delicious x Braeburn F1 SNP02076 NA NA 0 0 NA 0 0 56.6 13.02 10.1093/jxb/erv366 NA NA t3750.T000108 6 Tensile testing of apple peels_Area, Area, one of the parameters measured during the tensile testing of apple peels and calculated below the line of the mechanical profile. QTL analysis Golden Delicious x Braeburn F1 SNP01551 NA NA 0 0 NA 0 0 24 6.41 10.1093/jxb/erv366 NA NA t3750.T000109 I1 6 powdery mildew resistance QTL analysis Idared x U 211 F1 E33CM602 NA NA 0 0 E33TM520 NA 0 0 3 3.3 10.1111/j.1439-0523.2004.01049.x NA NA t3750.T000110 I2 6 powdery mildew resistance QTL analysis Idared x U 211 F1 E33TM520 NA NA 0 0 E32GM523 NA 0 0 0 2.4 10.1111/j.1439-0523.2004.01049.x NA NA t3750.T000111 I3 6 powdery mildew resistance QTL analysis Idared x U 211 F1 CH01d08 GDDH13v1.1 Chr15 15469426 15469679 E33TM606 NA 0 0 3 7.9 10.1111/j.1439-0523.2004.01049.x t3750.M000053.1 NA t3750.T000112 U1 6 powdery mildew resistance QTL analysis Idared x U 211 F1 E33TM536 NA NA 0 0 E33TM530 NA 0 0 19 12 10.1111/j.1439-0523.2004.01049.x NA NA t3750.T000113 U2 6 powdery mildew resistance QTL analysis Idared x U 211 F1 E32AM527 NA NA 0 0 E33CM622 NA 0 0 11 12.1 10.1111/j.1439-0523.2004.01049.x NA NA t3750.T000114 U3 6 powdery mildew resistance QTL analysis Idared x U 211 F1 E33TM530n NA NA 0 0 E33CM601 NA 0 0 0 2.6 10.1111/j.1439-0523.2004.01049.x NA NA t3750.T000115 U4 6 powdery mildew resistance QTL analysis Idared x U 211 F1 E33CM601 NA NA 0 0 E33TM538 NA 0 0 20 8.9 10.1111/j.1439-0523.2004.01049.x NA NA t3750.T000116 U5 6 powdery mildew resistance QTL analysis Idared x U 211 F1 E33CM607 NA NA 0 0 E32GM527 NA 0 0 17 9.3 10.1111/j.1439-0523.2004.01049.x NA NA t3750.T000117 U6 6 powdery mildew resistance QTL analysis Idared x U 211 F1 E32AM537 NA NA 0 0 E33CM608 NA 0 0 22 8.8 10.1111/j.1439-0523.2004.01049.x NA NA t3750.T000118 U7 6 powdery mildew resistance QTL analysis Idared x U 211 F1 E33TM603 NA NA 0 0 NZ28f4 NA 0 0 15 10.8 10.1111/j.1439-0523.2004.01049.x NA NA t3750.T000119 fdj08.3 6 Fruit diameter QTL analysis Jonathan x Golden Delicious F1 hmC03.5431144 NA NA 0 0 NA 0 0 24.65 3.95 10.1007/s10681-015-1488-y NA NA t3750.T000120 flg14.1 6 Fruit length QTL analysis Jonathan x Golden Delicious F1 hmC01.27382288 NA NA 0 0 NA 0 0 66.32 3.69 10.1007/s10681-015-1488-y NA NA t3750.T000121 flj08.7.1 6 Fruit length QTL analysis Jonathan x Golden Delicious F1 hmC07.9626405 NA NA 0 0 NA 0 0 6.48 4.87 10.1007/s10681-015-1488-y NA NA t3750.T000122 flj08.7.2 6 Fruit length QTL analysis Jonathan x Golden Delicious F1 hmC07.1728469 NA NA 0 0 NA 0 0 13.38 3.52 10.1007/s10681-015-1488-y NA NA t3750.T000123 flj09.11 6 Fruit length QTL analysis Jonathan x Golden Delicious F1 euLG11_008 NA NA 0 0 NA 0 0 47.55 3.73 10.1007/s10681-015-1488-y NA NA t3750.T000124 fsij08.11.1 6 Fruit shape index QTL analysis Jonathan x Golden Delicious F1 euC11.51398 NA NA 0 0 NA 0 0 0 4.85 10.1007/s10681-015-1488-y NA NA t3750.T000125 fsij08.11.2 6 Fruit shape index QTL analysis Jonathan x Golden Delicious F1 emC11.2710877 NA NA 0 0 NA 0 0 5.8 3.84 10.1007/s10681-015-1488-y NA NA t3750.T000126 fsij08.11.3 6 Fruit shape index QTL analysis Jonathan x Golden Delicious F1 euC11.4515793 NA NA 0 0 NA 0 0 11.48 6.09 10.1007/s10681-015-1488-y NA NA t3750.T000127 fsij08.11.4 6 Fruit shape index QTL analysis Jonathan x Golden Delicious F1 euC11.7408490 NA NA 0 0 NA 0 0 22.21 4.58 10.1007/s10681-015-1488-y NA NA t3750.T000128 fsij09.11.1 6 Fruit shape index QTL analysis Jonathan x Golden Delicious F1 euC11.4515793 NA NA 0 0 NA 0 0 11.48 5.53 10.1007/s10681-015-1488-y NA NA t3750.T000129 fsij09.11.2 6 Fruit shape index QTL analysis Jonathan x Golden Delicious F1 euC11.7408490 NA NA 0 0 NA 0 0 22.46 4.92 10.1007/s10681-015-1488-y NA NA t3750.T000130 fsij14.11.1 6 Fruit shape index QTL analysis Jonathan x Golden Delicious F1 euC11.51398 NA NA 0 0 NA 0 0 1 3.74 10.1007/s10681-015-1488-y NA NA t3750.T000131 fsij14.11.2 6 Fruit shape index QTL analysis Jonathan x Golden Delicious F1 euC11.4515793 NA NA 0 0 NA 0 0 9.6 5.75 10.1007/s10681-015-1488-y NA NA t3750.T000132 fsij14.11.3 6 Fruit shape index QTL analysis Jonathan x Golden Delicious F1 euC11.7408490 NA NA 0 0 NA 0 0 22.21 4.5 10.1007/s10681-015-1488-y NA NA t3750.T000133 fsij14.5.1 6 Fruit shape index QTL analysis Jonathan x Golden Delicious F1 huLG05_082 NA NA 0 0 NA 0 0 75.19 3.99 10.1007/s10681-015-1488-y NA NA t3750.T000134 qtla.j7 6 fruit acidity, Acetic acid content GWAS Jonathan x Golden Delicious F1 euLG07_014 NA NA 0 0 NA 0 0 59.83 3.7 10.1186/s12864-015-1946-x NA NA t3750.T000135 qtlc.g8 6 fruit acidity, Citric acid content GWAS Jonathan x Golden Delicious F1 huM001766.113.1072 NA NA 0 0 NA 0 0 46.58 3.7 10.1186/s12864-015-1946-x NA NA t3750.T000136 qtlc.j15 6 fruit acidity, Citric acid content GWAS Jonathan x Golden Delicious F1 huC15.29186826 NA NA 0 0 NA 0 0 64.01 3.6 10.1186/s12864-015-1946-x NA NA t3750.T000137 qtlc.j8 6 fruit acidity, Citric acid content GWAS Jonathan x Golden Delicious F1 emC08.14121899 NA NA 0 0 NA 0 0 59.15 5.5 10.1186/s12864-015-1946-x NA NA t3750.T000138 qtlf.j1 6 fruit sugar content, Fructose content GWAS Jonathan x Golden Delicious F1 huC01.18233570, emC01.11115376 NA NA 0 0 NA 0 0 37.82 4.3 10.1186/s12864-015-1946-x NA NA t3750.T000139 qtlff.j11a 6 Fruit firmness GWAS Jonathan x Golden Delicious F1 euC11.7408490, huC11.10309880 NA NA 0 0 NA 0 0 24.6 4.4 10.1186/s12864-015-1946-x NA NA t3750.T000140 qtlff.j11b 6 Fruit firmness GWAS Jonathan x Golden Delicious F1 euC11.5719084, hmC11.4173064 NA NA 0 0 NA 0 0 11.48 3.9 10.1186/s12864-015-1946-x NA NA t3750.T000141 qtlfw.j3 6 Fruit weight GWAS Jonathan x Golden Delicious F1 hmC03.5431144 NA NA 0 0 NA 0 0 24.65 3.7 10.1186/s12864-015-1946-x NA NA t3750.T000142 qtlfw.j5 6 Fruit weight GWAS Jonathan x Golden Delicious F1 euC05.25996313 NA NA 0 0 NA 0 0 53.86 3.8 10.1186/s12864-015-1946-x NA NA t3750.T000143 qtlma.j8 6 fruit acidity, Malic acid content GWAS Jonathan x Golden Delicious F1 emC08.14121899, emC08.13666872 NA NA 0 0 NA 0 0 57.27 7.7 10.1186/s12864-015-1946-x NA NA t3750.T000144 qtls.g1 6 fruit sugar content, Sucrose content GWAS Jonathan x Golden Delicious F1 huC01.18378291 NA NA 0 0 NA 0 0 49.57 3.5 10.1186/s12864-015-1946-x NA NA t3750.T000145 qtlta.j8 6 fruit acidity, Total acid content GWAS Jonathan x Golden Delicious F1 emC08.14121899, emC08.13666872 NA NA 0 0 NA 0 0 57.27 7.7 10.1186/s12864-015-1946-x NA NA t3750.T000146 6 14 dpi, length of stem necrosis at 14 days postinoculation QTL analysis M x E F1 Hi23d11y NA NA 0 0 NA 0 0 54.2 34 10.1139/G08-111 NA NA t3750.T000147 6 14 dpi, length of stem necrosis at 14 days postinoculation QTL analysis M x E F1 Hi04c05 NA NA 0 0 NA 0 0 40.3 6.1 10.1139/G08-111 NA NA t3750.T000148 6 reisitance to fire blight, reisitance to fire blight caused by E. amylovora strain Ea222_JKI QTL analysis MAL0045 x Idared F1 FR481A GDDH13v1.1 Chr10 31783124 31783351 NA 0 0 27.77 10.1007/s11032-014-0043-1 t3750.M000208.1 NA t3750.T000149 Mfu10 6 reisitance to fire blight, reisitance to fire blight caused by E. amylovora strain Ea222_JKI QTL analysis MAL0045 x Idared F1 FR481A GDDH13v1.1 Chr10 31783124 31783351 NA 0 0 31 10.1007/s11032-014-0043-1 t3750.M000208.1 NA t3750.T000150 6 Sugar content, Fructose content of fruit at harvest QTL analysis multiple apple breeding populations NULL ss475883868 NA NA 0 0 ss475876937 NA 0 0 59.8 10.1007/s11032-015-0334-1 NA NA t3750.T000151 6 Soluble solids content, Soluble solids content of fruit after harvest with the treatment of 4C storage for 10 weeks plus room temperature storage for a week QTL analysis multiple apple breeding populations NULL ss475875869 NA NA 0 0 ss475877444 NA 0 0 75.8 10.1007/s11032-015-0334-1 NA NA t3750.T000152 6 Sugar content, Fructose content of fruit at harvest QTL analysis multiple apple breeding populations NULL ss475882684 NA NA 0 0 ss475877593 NA 0 0 14.2 10.1007/s11032-015-0334-1 NA NA t3750.T000153 6 Sugar content, Sucrose content of fruit at harvest QTL analysis multiple apple breeding populations NULL ss475877847 NA NA 0 0 ss475877870 NA 0 0 7.9 10.1007/s11032-015-0334-1 NA NA t3750.T000154 6 Sugar content, Sorbitol content of fruit at harvest QTL analysis multiple apple breeding populations NULL ss475878145 NA NA 0 0 ss475878193 NA 0 0 3.2 10.1007/s11032-015-0334-1 NA NA t3750.T000155 6 Sugar content, Sucrose content of fruit at harvest QTL analysis multiple apple breeding populations NULL ss475879239 NA NA 0 0 ss475879333 NA 0 0 0.7 10.1007/s11032-015-0334-1 NA NA t3750.T000156 6 Sugar content, Sorbitol content of fruit at harvest QTL analysis multiple apple breeding populations NULL ss475884079 NA NA 0 0 ss475880269 NA 0 0 39.2 10.1007/s11032-015-0334-1 NA NA t3750.T000157 6 Sugar content, Sucrose content of fruit after harvest with the treatment of 4C storage for 10 weeks plus room temperature storage for a week QTL analysis multiple apple breeding populations NULL ss475880518 NA NA 0 0 ss475880556 NA 0 0 41.5 10.1007/s11032-015-0334-1 NA NA t3750.T000158 6 Sugar content, Sorbitol content of fruit after harvest with the treatment of 4C storage for 20 weeks plus room temperature storage for a week QTL analysis multiple apple breeding populations NULL ss475880955 NA NA 0 0 ss475883946 NA 0 0 99.8 10.1007/s11032-015-0334-1 NA NA t3750.T000159 6 Sugar content, Fructose content of fruit at harvest QTL analysis multiple apple breeding populations NULL ss475881585 NA NA 0 0 ss475881632 NA 0 0 94.7 10.1007/s11032-015-0334-1 NA NA t3750.T000160 6 Sugar content, Glucose content of fruit at harvest QTL analysis multiple apple breeding populations NULL ss485882553 NA NA 0 0 ss475884060 NA 0 0 2.4 10.1007/s11032-015-0334-1 NA NA t3750.T000161 6 bitter versus sweet phenotype, phenotypic differences of bitter versus sweet phenotype between cider and dessert apples GWAS NULL NULL RosBREEDSNP_SNP_AC_33325153_Lg1_ NA NA 0 0 NA 0 0 3.678 10.1111/eva.12270 NA NA t3750.T000162 6 fruit flavor, 2-Methylbutyl acetate, one of the fruit flavor volatiles GWAS NULL NULL ss475876985 NA NA 0 0 NA 0 0 10.1007/s11032-015-0312-7 NA NA t3750.T000163 6 fruit flavor, Butanol, one of the fruit flavor volatiles GWAS NULL NULL ss475875883 NA NA 0 0 NA 0 0 10.1007/s11032-015-0312-7 NA NA t3750.T000164 6 fruit flavor, Pentyl acetate, one of the fruit flavor volatiles GWAS NULL NULL ss475882758 NA NA 0 0 NA 0 0 10.1007/s11032-015-0312-7 NA NA t3750.T000165 6 cider versus dessert phenotype, phenotypic differences between cider and dessert apples GWAS NULL NULL RosBREEDSNP_SNP_CT_22024068_Lg5_ NA NA 0 0 NA 0 0 3.417 10.1111/eva.12270 NA NA t3750.T000166 6 soluble solids content GWAS NULL NULL ss475878574 NA NA 0 0 NA 0 0 10.1371/journal.pone.0036674 t3750.M000077.1 NA t3750.T000167 6 fruit flavor, Hexanol, one of the fruit flavor volatiles GWAS NULL NULL ss475882849 NA NA 0 0 NA 0 0 10.1007/s11032-015-0312-7 NA NA t3750.T000168 6 cider versus dessert phenotype, phenotypic differences between cider and dessert apples GWAS NULL NULL RosBREEDSNP_SNP_TG_23835076_Lg8_ NA NA 0 0 NA 0 0 3.701 10.1111/eva.12270 NA NA t3750.T000169 6 cider versus dessert phenotype, phenotypic differences between cider and dessert apples GWAS NULL NULL RosBREEDSNP_SNP_GA_33077622_Lg9_ NA NA 0 0 NA 0 0 3.65 10.1111/eva.12270 NA NA t3750.T000170 6 fruit firmness, Polygalacturonase (MDP0000232611) GWAS NULL NULL ss475883584 NA NA 0 0 NA 0 0 10.1371/journal.pone.0036674 t3750.M000082.1 NA t3750.T000171 6 fruit flavor, Butyl heptanoate, one of the fruit flavor volatiles GWAS NULL NULL ss475882368 NA NA 0 0 NA 0 0 10.1007/s11032-015-0312-7 NA NA t3750.T000172 6 cider versus dessert phenotype, phenotypic differences between cider and dessert apples GWAS NULL NULL RosBREEDSNP_SNP_GA_1240623_Lg12_ NA NA 0 0 NA 0 0 3.385 10.1111/eva.12270 NA NA t3750.T000173 6 fruit flavor, Butanol, one of the fruit flavor volatiles GWAS NULL NULL ss475880758 NA NA 0 0 NA 0 0 10.1007/s11032-015-0312-7 NA NA t3750.T000174 6 fruit flavor, Hexanol, one of the fruit flavor volatiles GWAS NULL NULL ss475881136 NA NA 0 0 NA 0 0 10.1007/s11032-015-0312-7 NA NA t3750.T000175 6 bitter versus sweet phenotype, phenotypic differences of bitter versus sweet phenotype between cider and dessert apples GWAS NULL NULL GDsnp01850 NA NA 0 0 NA 0 0 3.143 10.1111/eva.12270 NA NA t3750.T000176 6 bitter versus sweet phenotype, phenotypic differences of bitter versus sweet phenotype between cider and dessert apples GWAS NULL NULL RosBREEDSNP_SNP_AC_1452699_Lg16_ NA NA 0 0 NA 0 0 3.556 10.1111/eva.12270 NA NA t3750.T000177 6 bitter versus sweet phenotype, phenotypic differences of bitter versus sweet phenotype between cider and dessert apples GWAS NULL NULL RosBREEDSNP_SNP_CT_17294445_Lg17 NA NA 0 0 NA 0 0 3.146 10.1111/eva.12270 NA NA t3750.T000178 6 Russet-Calyx, Proportion of area covered with russet, examined from the calyx side QTL analysis Orin x Akane F1 CH02c06 NA NA 0 0 NA 0 0 50.9 4.38 10.1270/jsbbs.64.240 t3750.M000084.1 NA t3750.T000179 6 Russet-Pedicel, Proportion of area covered with russet, examined from the pedicel side QTL analysis Orin x Akane F1 NB141b NA NA 0 0 NA 0 0 53.9 2.87 10.1270/jsbbs.64.240 NA NA t3750.T000180 6 Preharvest fruit drop, Proportion of the fruits that dropped before the harvest time QTL analysis Orin x Akane F1 CH05e06 GDDH13v1.1 Chr05 38087150 38087300 NA 0 0 16.1 4.09 10.1270/jsbbs.64.240 t3750.M000176.1 NA t3750.T000181 6 Fructose content, Fructose content of the juice, obtained using an HPLC QTL analysis Orin x Akane F1 CH03d07 GDDH13v1.1 Chr06 8107463 8107649 NA 0 0 8.6 3.27 10.1270/jsbbs.64.240 t3750.M000115.1 NA t3750.T000182 6 Russet-Pedicel, Proportion of area covered with russet, examined from the pedicel side QTL analysis Orin x Akane F1 SAmsCV883434 NA NA 0 0 NA 0 0 37.6 3 10.1270/jsbbs.64.240 NA NA t3750.T000183 6 Depth of skin color, skin color rated from pale red to dark/vivid red QTL analysis Orin x Akane F1 EMPc115 NA NA 0 0 NA 0 0 69.4 5.12 10.1270/jsbbs.64.240 NA NA t3750.T000184 6 Sucrose content, Sucrose content of the juice, obtained using HPLC QTL analysis Orin x Akane F1 TsuENH109 NA NA 0 0 NA 0 0 26.3 4.21 10.1270/jsbbs.64.240 NA NA t3750.T000185 6 Sorbitol content, Sorbitol content of the juice, obtained using an HPLC QTL analysis Orin x Akane F1 CH05d11 GDDH13v1.1 Chr12 7989321 7989492 NA 0 0 23.6 2.79 10.1270/jsbbs.64.240 t3750.M000172.1 NA t3750.T000186 6 Flowering date, The date in May when the first flower opened QTL analysis Orin x Akane F1 Hi09f01 NA NA 0 0 NA 0 0 86.3 9.63 10.1270/jsbbs.64.240 NA NA t3750.T000187 6 Brix, Soluble solids content, Brix value of the juice obtained using a refractometer QTL analysis Orin x Akane F1 CH05c06 GDDH13v1.1 Chr16 3896699 3896818 NA 0 0 16.6 8.26 10.1270/jsbbs.64.240 t3750.M000166.1 NA t3750.T000188 6 fire blight resistance QTL analysis Prima x Fiesta (P x F) F1 MS14h03 NA NA 0 0 NA 0 0 53.8 4.09 10.1007/s00122-005-2002-z NA NA t3750.T000189 6 fire blight resistance QTL analysis Prima x Fiesta (P x F) F1 GE80-19-0550 NA NA 0 0 NA 0 0 46.7 19.14 10.1007/s00122-005-2002-z NA NA t3750.T000190 6 Kaempferol-rhamnoside (4297), Kaempferol glycoside (peel) QTL analysis Prima x Fiesta F1 NA NA 0 0 NA 0 0 41 30.32 10.1093/jxb/err464 NA NA t3750.T000191 6 Sensory, Granularity QTL analysis Prima x Fiesta F1 NA NA 0 0 NA 0 0 5.1 10.1007/s001220051389 NA NA t3750.T000192 6 metabolite content, Putative metabolite number 6050 in peel (annotation: unknown) QTL analysis Prima x Fiesta F1 NA NA 0 0 NA 0 0 44.8 10.1 10.1111/pbr.12134 NA NA t3750.T000193 6 Weight QTL analysis Prima x Fiesta F1 NA NA 0 0 NA 0 0 4.53 10.1007/s001220000530 NA NA t3750.T000194 6 Procyanidin type (1481), Procyanidin (flesh) QTL analysis Prima x Fiesta F1 NA NA 0 0 NA 0 0 26.97 5.06 10.1093/jxb/err464 NA NA t3750.T000195 6 Specific gravity QTL analysis Prima x Fiesta F1 NA NA 0 0 NA 0 0 7.99 10.1007/s001220000530 NA NA t3750.T000196 6 wedge fracture, Distance at crack propagation QTL analysis Prima x Fiesta F1 NA NA 0 0 NA 0 0 4.75 10.1007/s001220000530 NA NA t3750.T000197 6 metabolite content, Putative metabolite number 5045 in peel (annotation: unknown) QTL analysis Prima x Fiesta F1 NA NA 0 0 NA 0 0 1.5 39.6 10.1111/pbr.12134 NA NA t3750.T000198 6 FFF-1, Fruit flesh firmness by penetrometer with 8 mm probe; 3 readings QTL analysis Prima x Fiesta F1 NA NA 0 0 NA 0 0 3.1 10.1007/s001220051389 NA NA t3750.T000199 6 FFF, Fruit flesh firmness QTL analysis Prima x Fiesta F1 NA NA 0 0 NA 0 0 7.4 10.1007/s001220051389 NA NA t3750.T000200 6 FFF-1, Fruit flesh firmness by penetrometer with 8 mm probe; 3 readings QTL analysis Prima x Fiesta F1 NA NA 0 0 NA 0 0 5.9 10.1007/s001220051389 NA NA t3750.T000201 6 Methoxy-quercetin pentoside I (4264), Methoxy-quercetin glycoside (peel) QTL analysis Prima x Fiesta F1 NA NA 0 0 NA 0 0 51 30.07 10.1093/jxb/err464 NA NA t3750.T000202 6 compression, Compression stiffness modulus QTL analysis Prima x Fiesta F1 NA NA 0 0 NA 0 0 8.62 10.1007/s001220000530 NA NA t3750.T000203 6 Low membership (1772), could not be annotated (peel) QTL analysis Prima x Fiesta F1 NA NA 0 0 NA 0 0 6 44.4 10.1093/jxb/err464 NA NA t3750.T000204 6 Acylated quercetin hexoside (3504), Quercetin glycoside (peel) QTL analysis Prima x Fiesta F1 NA NA 0 0 NA 0 0 8.6 13.21 10.1093/jxb/err464 NA NA t3750.T000205 6 SYM, symptom class for scab resistance QTL analysis Prima x Fiesta F1 CH01h01, MC228c NA NA 0 0 NA 0 0 22.1 5.9 10.1139/g02-127 NA NA t3750.T000206 6 SYM, symptom class for scab resistance QTL analysis Prima x Fiesta F1 OPAL-07-0580 NA NA 0 0 NA 0 0 46.4 8.9 10.1139/g02-127 NA NA t3750.T000207 6 MSPOR, maximum sporulation severity QTL analysis Prima x Fiesta F1 CH04h02z, OPA09-0600 NA NA 0 0 NA 0 0 4.5 9.5 10.1139/g02-127 NA NA t3750.T000208 6 bitter pit, bitter pit symptoms QTL analysis R x X NULL Hi22f06 NA NA 0 0 NA 0 0 1.652 12.84 10.1007/s11032-015-0258-9 t3750.M000643.1 NA t3750.T000209 6 apple skin russeting GWAS RGT x GD F1 SNP_FB_0504021 NA NA 0 0 NA 0 0 10.1186/s12870-015-0507-4 t3750.M012706.1 NA t3750.T000210 6 apple skin russeting GWAS RGT x GD F1 GDsnp01267 NA NA 0 0 NA 0 0 10.1186/s12870-015-0507-4 NA NA t3750.T000211 6 apple skin russeting GWAS RGT x GD F1 GDsnp10010 NA NA 0 0 NA 0 0 10.1186/s12870-015-0507-4 NA NA t3750.T000212 6 apple skin russeting GWAS RGT x GD F1 SNP_FB_0149402 NA NA 0 0 NA 0 0 10.1186/s12870-015-0507-4 t3750.M007011.1 NA t3750.T000213 Fruit weight_2009 6 NA QTL analysis Royal Gala x Braeburn (RGxBB) F1 GD_SNP00293 NA NA 0 0 NA 0 0 3.37 10.1186/1471-2229-12-7 NA NA t3750.T000214 Fruit weight_2010 6 NA QTL analysis Royal Gala x Braeburn (RGxBB) F1 GD_SNP00714 NA NA 0 0 NA 0 0 4.65 10.1186/1471-2229-12-7 NA NA t3750.T000215 Fruit weight_2010 6 NA QTL analysis Royal Gala x Braeburn (RGxBB) F1 GD_SNP01813 NA NA 0 0 NA 0 0 4.87 10.1186/1471-2229-12-7 NA NA t3750.T000216 Fruit weight_Hawke's Bay 6 NA QTL analysis Royal Gala x Braeburn (RGxBB) F1 GD_SNP00166 NA NA 0 0 NA 0 0 3.3 10.1186/1471-2229-12-7 NA NA t3750.T000217 Fruit weight_Hawke's Bay 6 NA QTL analysis Royal Gala x Braeburn (RGxBB) F1 GD_SNP00004 NA NA 0 0 NA 0 0 6.35 10.1186/1471-2229-12-7 NA NA t3750.T000218 Fruit weight_Hawke's Bay 6 NA QTL analysis Royal Gala x Braeburn (RGxBB) F1 GD_SNP01347 NA NA 0 0 NA 0 0 4.12 10.1186/1471-2229-12-7 NA NA t3750.T000219 Fruit weight_Hawke's Bay 6 NA QTL analysis Royal Gala x Braeburn (RGxBB) F1 GD_SNP02087 NA NA 0 0 NA 0 0 6.88 10.1186/1471-2229-12-7 NA NA t3750.T000220 Fruit weight 6 NA QTL analysis Royal Gala x Braeburn (RGxBB) F1 GD_SNP00231 NA NA 0 0 NA 0 0 6.03 10.1186/1471-2229-12-7 t3750.M000619.1 NA t3750.T000221 Fruit weight 6 NA QTL analysis Royal Gala x Braeburn (RGxBB) F1 GD_SNP01169 NA NA 0 0 NA 0 0 7.21 10.1186/1471-2229-12-7 NA NA t3750.T000222 Fruit weight 6 NA QTL analysis Royal Gala x Braeburn (RGxBB) F1 GD_SNP00004 NA NA 0 0 NA 0 0 7.64 10.1186/1471-2229-12-7 NA NA t3750.T000223 Fruit weight 6 NA QTL analysis Royal Gala x Braeburn (RGxBB) F1 GD_SNP01534 NA NA 0 0 NA 0 0 9.4 10.1186/1471-2229-12-7 NA NA t3750.T000224 Fruit weight 6 NA QTL analysis Royal Gala x Braeburn (RGxBB) F1 LG16_3662305 NA NA 0 0 NA 0 0 10.98 10.1186/1471-2229-12-7 NA NA t3750.T000225 6 p-coumaroyl quinic acid (Skin) QTL analysis Royal Gala x Braeburn F1 GDsnp01678 NA NA 0 0 NA 0 0 5.57 10.1186/1471-2229-12-12 NA NA t3750.T000226 6 p-coumaroyl quinic acid (Skin) QTL analysis Royal Gala x Braeburn F1 GDsnp00197 NA NA 0 0 NA 0 0 3.53 10.1186/1471-2229-12-12 NA NA t3750.T000227 6 Unknown procyanidin oligomer 2 (Cortex) QTL analysis Royal Gala x Braeburn F1 GDsnp01946 NA NA 0 0 NA 0 0 4.3 10.1186/1471-2229-12-12 NA NA t3750.T000228 6 Cyanidin 3-O-galactoside (Skin) QTL analysis Royal Gala x Braeburn F1 GDsnp00452 NA NA 0 0 NA 0 0 8.91 10.1186/1471-2229-12-12 NA NA t3750.T000229 6 Chlorogenic acid (Cortex) QTL analysis Royal Gala x Braeburn F1 GDsnp00101 NA NA 0 0 NA 0 0 4 10.1186/1471-2229-12-12 NA NA t3750.T000230 6 p-coumaroyl quinic acid (Cortex) QTL analysis Royal Gala x Braeburn F1 GDsnp01767 NA NA 0 0 NA 0 0 6.78 10.1186/1471-2229-12-12 NA NA t3750.T000231 6 p-coumaroyl quinic acid (Cortex) QTL analysis Royal Gala x Braeburn F1 GDsnp00932 NA NA 0 0 NA 0 0 4.65 10.1186/1471-2229-12-12 NA NA t3750.T000232 6 Unknown procyanidin oligomer 1 (Skin) QTL analysis Royal Gala x Braeburn F1 LAR1 NA NA 0 0 NA 0 0 41.28 10.1186/1471-2229-12-12 NA NA t3750.T000233 6 Chlorogenic acid (Skin) QTL analysis Royal Gala x Braeburn F1 GDsnp01525 NA NA 0 0 NA 0 0 13.98 10.1186/1471-2229-12-12 NA NA t3750.T000234 6 estragole concentration, estragole (one of methylated phenylpropenes) concentration contributed for ripe apple fruit flavor QTL analysis Royal Gala x Granny Smith F1 ss475876798 NA NA 0 0 NA 0 0 2.76 10.1111/tpj.12861 NA NA t3750.T000235 6 estragole concentration, estragole (one of methylated phenylpropenes) concentration contributed for ripe apple fruit flavor QTL analysis Royal Gala x Granny Smith F1 ss475876985 NA NA 0 0 NA 0 0 8.47 10.1111/tpj.12861 NA NA t3750.T000236 6 ripe apple flavour, Butyl butanoate, Butyl propanoate, Propyl butanoate and Propyl hexanoate, volatile ester compound contributing to ripe apple flavour QTL analysis Royal Gala x Granny Smith F1 ss475877464 NA NA 0 0 NA 0 0 3 10.1111/tpj.12518 NA NA t3750.T000237 6 ripe apple flavour, 3-Methylbutyl propanoate, Butyl butanoate, Butyl heptanoate and Butyl hexanoate, volatile ester compound contributing to ripe apple flavour QTL analysis Royal Gala x Granny Smith F1 ss475878013 NA NA 0 0 NA 0 0 3.301 10.1111/tpj.12518 NA NA t3750.T000238 6 ripe apple flavour, Propyl propanoate, volatile ester compound contributing to ripe apple flavour QTL analysis Royal Gala x Granny Smith F1 ss475878268 NA NA 0 0 NA 0 0 3 10.1111/tpj.12518 NA NA t3750.T000239 6 ripe apple flavour, Pentyl 2-methylbutanoate, volatile ester compound contributing to ripe apple flavour QTL analysis Royal Gala x Granny Smith F1 ss475878508 NA NA 0 0 NA 0 0 3 10.1111/tpj.12518 NA NA t3750.T000240 6 ripe apple flavour, 3-Methylbutyl hexanoate, volatile ester compound contributing to ripe apple flavour QTL analysis Royal Gala x Granny Smith F1 ss475878882 NA NA 0 0 NA 0 0 3.301 10.1111/tpj.12518 NA NA t3750.T000241 6 ripe apple flavour, Butyl pentanoate, volatile ester compound contributing to ripe apple flavour QTL analysis Royal Gala x Granny Smith F1 ss475879018 NA NA 0 0 NA 0 0 3 10.1111/tpj.12518 NA NA t3750.T000242 6 ripe apple flavour, Pentyl butanoate, volatile ester compound contributing to ripe apple flavour QTL analysis Royal Gala x Granny Smith F1 ss475879279 NA NA 0 0 NA 0 0 3 10.1111/tpj.12518 NA NA t3750.T000243 6 ripe apple flavour, Methyl butanoate, Methyl hexanoate and Methyl pentanoate, volatile ester compound contributing to ripe apple flavour QTL analysis Royal Gala x Granny Smith F1 ss475883584 NA NA 0 0 NA 0 0 3 10.1111/tpj.12518 t3750.M000082.1 NA t3750.T000244 6 ripe apple flavour, Pentyl propanoate, volatile ester compound contributing to ripe apple flavour QTL analysis Royal Gala x Granny Smith F1 ss475883036 NA NA 0 0 NA 0 0 3 10.1111/tpj.12518 NA NA t3750.T000245 6 ripe apple flavour, 6-Methyl-5-heptene-2-one, volatile ester compound contributing to ripe apple flavour QTL analysis Royal Gala x Granny Smith F1 ss475882400 NA NA 0 0 NA 0 0 3 10.1111/tpj.12518 NA NA t3750.T000246 6 ripe apple flavour, Butyl butanoate and Ethyl pentanoate, volatile ester compound contributing to ripe apple flavour QTL analysis Royal Gala x Granny Smith F1 ss475881026 (Butyl butanoate), s NA NA 0 0 NA 0 0 3 10.1111/tpj.12518 NA NA t3750.T000247 6 ripe apple flavour, Butyl octanoate and Hexyl octanoate, volatile ester compound contributing to ripe apple flavour QTL analysis Royal Gala x Granny Smith F1 ss475882497 (Butyl octanoate), s NA NA 0 0 NA 0 0 3 10.1111/tpj.12518 NA NA t3750.T000248 6 ripe apple flavour, Pentyl 3-methylbutanoate, volatile ester compound contributing to ripe apple flavour QTL analysis Royal Gala x Granny Smith F1 ss475882225 NA NA 0 0 NA 0 0 3 10.1111/tpj.12518 NA NA t3750.T000249 BBI_fruit 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MdAFB6_S NA NA 0 0 NA 0 0 5.16 10.1093/jxb/err261 NA NA t3750.T000250 BBI_fruit 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 CH03h03z_SG NA NA 0 0 NA 0 0 4.87 10.1093/jxb/err261 NA NA t3750.T000251 BBI_inf 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 Hi04c10x_SG NA NA 0 0 NA 0 0 5.31 10.1093/jxb/err261 NA NA t3750.T000252 BBI_inf 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 Hi04b12_S NA NA 0 0 NA 0 0 4.33 10.1093/jxb/err261 NA NA t3750.T000253 BBI_inf 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MdGA2ox8a_G NA NA 0 0 NA 0 0 4.63 10.1093/jxb/err261 NA NA t3750.T000254 BBI_mass 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MdAFB6_S NA NA 0 0 NA 0 0 4.18 10.1093/jxb/err261 NA NA t3750.T000255 BBI_mass 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 CH03h03z_SG NA NA 0 0 NA 0 0 4.89 10.1093/jxb/err261 NA NA t3750.T000256 CY_fruit 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MdGA3ox_like_b_S NA NA 0 0 NA 0 0 5.91 10.1093/jxb/err261 NA NA t3750.T000257 CY_fruit 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MdPI_SG NA NA 0 0 NA 0 0 5.07 10.1093/jxb/err261 NA NA t3750.T000258 CY_inf 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 NZ02b01_S NA NA 0 0 NA 0 0 6.35 10.1093/jxb/err261 NA NA t3750.T000259 NFI 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MdPI_SG NA NA 0 0 NA 0 0 4.64 10.1093/jxb/err261 NA NA t3750.T000260 NSF 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 CH03e03_SG NA NA 0 0 NA 0 0 7.33 10.1093/jxb/err261 NA NA t3750.T000261 NSF 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MS06g03_G NA NA 0 0 NA 0 0 5.42 10.1093/jxb/err261 NA NA t3750.T000262 NSI 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 NZmsMdMYB12_S NA NA 0 0 NA 0 0 5.54 10.1093/jxb/err261 NA NA t3750.T000263 NSI 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MS06g03_G NA NA 0 0 NA 0 0 4.48 10.1093/jxb/err261 NA NA t3750.T000264 NSI 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MdLD_G NA NA 0 0 NA 0 0 6.38 10.1093/jxb/err261 NA NA t3750.T000265 PI_fruit 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 CH03g07_SG NA NA 0 0 NA 0 0 5.46 10.1093/jxb/err261 NA NA t3750.T000266 PI_fruit 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 CH03a04_S NA NA 0 0 NA 0 0 5.37 10.1093/jxb/err261 NA NA t3750.T000267 PI_fruit 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 NZ04h11y_G NA NA 0 0 NA 0 0 4.8 10.1093/jxb/err261 NA NA t3750.T000268 PI_inf 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 NZmsMdMYB12_S NA NA 0 0 NA 0 0 4.51 10.1093/jxb/err261 NA NA t3750.T000269 PI_inf 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MdSOC1b_S NA NA 0 0 NA 0 0 4.77 10.1093/jxb/err261 NA NA t3750.T000270 PI_inf 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MS06g03_G NA NA 0 0 NA 0 0 4.12 10.1093/jxb/err261 NA NA t3750.T000271 PI_mass 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 CH03g07_SG NA NA 0 0 NA 0 0 4.96 10.1093/jxb/err261 NA NA t3750.T000272 PI_mass 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 CH03a04_S NA NA 0 0 NA 0 0 4.74 10.1093/jxb/err261 NA NA t3750.T000273 PI_mass 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 NZ04h11y_G NA NA 0 0 NA 0 0 4.28 10.1093/jxb/err261 NA NA t3750.T000274 Y_fruit_2 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MdGA20ox1a_S NA NA 0 0 NA 0 0 4.19 10.1093/jxb/err261 NA NA t3750.T000275 Y_fruit_2 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MdPI_SG NA NA 0 0 NA 0 0 4.03 10.1093/jxb/err261 NA NA t3750.T000276 Y_fruit_3 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 CH04e03_SG NA NA 0 0 NA 0 0 4.43 10.1093/jxb/err261 NA NA t3750.T000277 Y_fruit_3 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 GD_SNP01140_SG NA NA 0 0 NA 0 0 5.46 10.1093/jxb/err261 NA NA t3750.T000278 Y_fruit_5 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MdSOC1-like_G NA NA 0 0 NA 0 0 3.71 10.1093/jxb/err261 NA NA t3750.T000279 Y_fruit_7 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MdPI_SG NA NA 0 0 NA 0 0 4.84 10.1093/jxb/err261 NA NA t3750.T000280 Y_fruit 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MdGA20ox1a_S NA NA 0 0 NA 0 0 4.35 10.1093/jxb/err261 NA NA t3750.T000281 Y_fruit 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MdPI_SG NA NA 0 0 NA 0 0 4.06 10.1093/jxb/err261 NA NA t3750.T000282 Y_inf_2 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 NZ02b01_S NA NA 0 0 NA 0 0 6.11 10.1093/jxb/err261 NA NA t3750.T000283 Y_inf_3 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MdGA20ox1a_S NA NA 0 0 NA 0 0 5.18 10.1093/jxb/err261 NA NA t3750.T000284 Y_inf_6 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 MdGA20ox1a_S NA NA 0 0 NA 0 0 4.51 10.1093/jxb/err261 NA NA t3750.T000285 Y_inf_6 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 Hi04b12_S NA NA 0 0 NA 0 0 5.55 10.1093/jxb/err261 NA NA t3750.T000286 Y_inf 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 NZ02b01_S NA NA 0 0 NA 0 0 6.03 10.1093/jxb/err261 NA NA t3750.T000287 Y_mass_3 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 B2-T7_S NA NA 0 0 NA 0 0 4.92 10.1093/jxb/err261 NA NA t3750.T000288 Y_mass_3 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 CH02a08z_S NA NA 0 0 NA 0 0 4.96 10.1093/jxb/err261 NA NA t3750.T000289 Y_mass_7 6 NA QTL analysis Starkrimson x Granny Smith (STK x GS) F1 NH033b_SG NA NA 0 0 NA 0 0 3.78 10.1093/jxb/err261 NA NA t3750.T000290 Fruit weight_2008 6 NA QTL analysis Starkrimson x Granny Smith (STKxGS) F1 CH02g09_SG NA NA 0 0 NA 0 0 3.52 10.1186/1471-2229-12-7 NA NA t3750.T000291 Fruit weight_2008 6 NA QTL analysis Starkrimson x Granny Smith (STKxGS) F1 MdARF106_SG NA NA 0 0 NA 0 0 3.99 10.1186/1471-2229-12-7 NA NA t3750.T000292 Fruit weight 6 NA QTL analysis Starkrimson x Granny Smith (STKxGS) F1 CH02g09_SG NA NA 0 0 NA 0 0 7.91 10.1186/1471-2229-12-7 NA NA t3750.T000293 Fruit weight 6 NA QTL analysis Starkrimson x Granny Smith (STKxGS) F1 MdARF106_SG NA NA 0 0 NA 0 0 5.45 10.1186/1471-2229-12-7 NA NA t3750.T000294 Fruit weight 6 NA QTL analysis Starkrimson x Granny Smith (STKxGS) F1 MdLD_G NA NA 0 0 NA 0 0 5.5 10.1186/1471-2229-12-7 NA NA t3750.T000295 6 Whole-tree branching (AS) QTL analysis Starkrimson x Granny Smith F1 CH03g12-1_S NA NA 0 0 NA 0 0 4.21 10.1139/G07-002 NA NA t3750.T000296 6 VB_BLUPs, green point QTL analysis Starkrimson x Granny Smith F1 AP2 GDDH13v1.1 Chr10 4126611 4126804 NA 0 0 30.7 6.62 10.1111/j.1469-8137.2011.03823.x t3750.M019238.1 NA t3750.T000297 6 VB_BLUPs, green point QTL analysis Starkrimson x Granny Smith F1 Hi07e08y NA NA 0 0 NA 0 0 56 6.55 10.1111/j.1469-8137.2011.03823.x NA NA t3750.T000298 6 fruit yield, fruit yield biomass per tree per year under water stress (drought) condition QTL analysis Starkrimson x Granny Smith F1 NA NA 0 0 NA 0 0 0 4.59 10.1093/jxb/erv355 NA NA t3750.T000299 6 differential index of difference of the temperature between the surface and air QTL analysis Starkrimson x Granny Smith F1 NA NA 0 0 NA 0 0 0 6.74 10.1093/jxb/erv355 NA NA t3750.T000300 6 Internode lengthening (INLmax_tr) QTL analysis Starkrimson x Granny Smith F1 Hi05b09_SG NA NA 0 0 NA 0 0 3.88 10.1139/G07-002 NA NA t3750.T000301 6 GP07, green point QTL analysis Starkrimson x Granny Smith F1 CH02g09 GDDH13v1.1 Chr08 10016384 10016501 NA 0 0 27.6 8.29 10.1111/j.1469-8137.2011.03823.x t3750.M000098.1 NA t3750.T000302 6 GP10, green point QTL analysis Starkrimson x Granny Smith F1 CH01f03b GDDH13v1.1 Chr09 9718373 9718544 NA 0 0 7.7 5.42 10.1111/j.1469-8137.2011.03823.x t3750.M000060.1 NA t3750.T000303 6 LSAS form (Bang_LSAS) QTL analysis Starkrimson x Granny Smith F1 COL_SG NA NA 0 0 NA 0 0 7.26 10.1139/G07-002 NA NA t3750.T000304 6 Trunk branching (UpZone_tr) QTL analysis Starkrimson x Granny Smith F1 CH02d12_SG NA NA 0 0 NA 0 0 4.46 10.1139/G07-002 NA NA t3750.T000305 6 GP10, green point QTL analysis Starkrimson x Granny Smith F1 CH01f02 GDDH13v1.1 Chr12 23554620 23554790 NA 0 0 43.7 5.88 10.1111/j.1469-8137.2011.03823.x t3750.M000058.1 NA t3750.T000306 6 Whole-tree branching (AS) QTL analysis Starkrimson x Granny Smith F1 CH03h03_SG NA NA 0 0 NA 0 0 5.79 10.1139/G07-002 NA NA t3750.T000307 6 normalized difference vegetation index, normalized difference vegetation index under well water condition QTL analysis Starkrimson x Granny Smith F1 NA NA 0 0 NA 0 0 26.318 4.27 10.1093/jxb/erv355 NA NA t3750.T000308 6 Whole-tree branching (S) QTL analysis Starkrimson x Granny Smith F1 CH04f10_SG NA NA 0 0 NA 0 0 7.3 10.1139/G07-002 NA NA t3750.T000309 %Br_LSAS 6 percentage of branching nodes, Branching percentage of branching nodes on two long sylleptic axillary shoots QTL analysis Starkrimson x Granny Smith F1 CH04e02 GDDH13v1.1 Chr04 714448 714604 NA 0 0 5.7 10.1007/s11295-008-0181-x t3750.M000142.1 NA t3750.T000310 %Br_tree 6 percentage of branching nodes, Branching percentage of branching nodes of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH04e02 GDDH13v1.1 Chr04 714448 714604 NA 0 0 5.02 10.1007/s11295-008-0181-x t3750.M000142.1 NA t3750.T000311 %Br_trunk 6 percentage of branching nodes, Branching percentage of branching nodes of the shoots QTL analysis Starkrimson x Granny Smith F1 Hi02f12 NA NA 0 0 NA 0 0 4.2 10.1007/s11295-008-0181-x NA NA t3750.T000312 %Br2_LSAS 6 percentage of branching nodes, Branching percentage of branching nodes on two long sylleptic axillary shoots QTL analysis Starkrimson x Granny Smith F1 CH05g08 GDDH13v1.1 Chr01 32383472 32383649 NA 0 0 4.19 10.1007/s11295-008-0181-x t3750.M000185.1 NA t3750.T000313 %Br2_LSAS 6 percentage of branching nodes, Branching percentage of branching nodes on two long sylleptic axillary shoots QTL analysis Starkrimson x Granny Smith F1 CH05f04 GDDH13v1.1 Chr13 41776366 41776529 NA 0 0 4.23 10.1007/s11295-008-0181-x t3750.M000177.1 NA t3750.T000314 %Br2_tree 6 percentage of branching nodes, Branching percentage of branching nodes of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH05f04 GDDH13v1.1 Chr13 41776366 41776529 NA 0 0 4.57 10.1007/s11295-008-0181-x t3750.M000177.1 NA t3750.T000315 %Br3_LSAS 6 percentage of branching nodes, Branching percentage of branching nodes on two long sylleptic axillary shoots QTL analysis Starkrimson x Granny Smith F1 Hi03a10 NA NA 0 0 NA 0 0 6.26 10.1007/s11295-008-0181-x NA NA t3750.T000316 %Br3_LSAS 6 percentage of branching nodes, Branching percentage of branching nodes on two long sylleptic axillary shoots QTL analysis Starkrimson x Granny Smith F1 CH04h02 GDDH13v1.1 Chr11 336821 337046 NA 0 0 4.18 10.1007/s11295-008-0181-x t3750.M000157.1 NA t3750.T000317 %Br3_tree 6 percentage of branching nodes, Branching percentage of branching nodes of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 Hi03a10 NA NA 0 0 NA 0 0 5.84 10.1007/s11295-008-0181-x NA NA t3750.T000318 %Br3_tree 6 percentage of branching nodes, Branching percentage of branching nodes of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH04h02 GDDH13v1.1 Chr11 336821 337046 NA 0 0 4.37 10.1007/s11295-008-0181-x t3750.M000157.1 NA t3750.T000319 Bdia05_tree 6 bottom diameter, bottom diameter of the shoots in the secondary growth on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH05g08 GDDH13v1.1 Chr01 32383472 32383649 NA 0 0 4.17 10.1007/s11295-008-0181-x t3750.M000185.1 NA t3750.T000320 Bdia06_tree 6 bottom diameter increment, Secondary bottom diameter increment of the shoots in the secondary growth on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH04e05 GDDH13v1.1 Chr07 17303721 17303894 NA 0 0 4.27 10.1007/s11295-008-0181-x t3750.M000144.1 NA t3750.T000321 Br_tree 6 number of axillary shoots, Branching number of axillary shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH02h11a GDDH13v1.1 Chr04 17878497 17878626 NA 0 0 4.7 10.1007/s11295-008-0181-x t3750.M000100.1 NA t3750.T000322 Br05_tree 6 number of axillary shoots, Branching number of axillary shoots of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH05f04 GDDH13v1.1 Chr13 41776366 41776529 NA 0 0 4.55 10.1007/s11295-008-0181-x t3750.M000177.1 NA t3750.T000323 Br2_tree 6 number of axillary shoots, Branching number of axillary shoots of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH05f04 GDDH13v1.1 Chr13 41776366 41776529 NA 0 0 7.47 10.1007/s11295-008-0181-x t3750.M000177.1 NA t3750.T000324 Br2_trunk 6 number of axillary shoots, Branching number of axillary shoots of the shoots QTL analysis Starkrimson x Granny Smith F1 CH05f04 GDDH13v1.1 Chr13 41776366 41776529 NA 0 0 4.96 10.1007/s11295-008-0181-x t3750.M000177.1 NA t3750.T000325 INL_LPAS 6 mean internode length, Primary mean internode length on two long proleptic axillary shoots QTL analysis Starkrimson x Granny Smith F1 CH03e03 GDDH13v1.1 Chr03 623918 624117 NA 0 0 4.69 10.1007/s11295-008-0181-x t3750.M000120.1 NA t3750.T000326 INL_LPAS 6 mean internode length, Primary mean internode length on two long proleptic axillary shoots QTL analysis Starkrimson x Granny Smith F1 Hi04c10x NA NA 0 0 NA 0 0 4.91 10.1007/s11295-008-0181-x NA NA t3750.T000327 INL_LPAS 6 mean internode length, Primary mean internode length on two long proleptic axillary shoots QTL analysis Starkrimson x Granny Smith F1 CH04f10 GDDH13v1.1 Chr16 33599859 33600046 NA 0 0 4.26 10.1007/s11295-008-0181-x t3750.M000151.1 NA t3750.T000328 INL_LSAS 6 mean internode length, Primary mean internode length on two long sylleptic axillary shoots QTL analysis Starkrimson x Granny Smith F1 CH03e03 GDDH13v1.1 Chr03 623918 624117 NA 0 0 5.3 10.1007/s11295-008-0181-x t3750.M000120.1 NA t3750.T000329 INL_LSAS 6 mean internode length, Primary mean internode length on two long sylleptic axillary shoots QTL analysis Starkrimson x Granny Smith F1 CH03d07 GDDH13v1.1 Chr06 8107463 8107649 NA 0 0 4.95 10.1007/s11295-008-0181-x t3750.M000115.1 NA t3750.T000330 INL_tree 6 mean internode length, Primary mean internode length of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH03e03 GDDH13v1.1 Chr03 623918 624117 NA 0 0 4.52 10.1007/s11295-008-0181-x t3750.M000120.1 NA t3750.T000331 INL_tree 6 mean internode length, Primary mean internode length of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH03d07 GDDH13v1.1 Chr06 8107463 8107649 NA 0 0 4.85 10.1007/s11295-008-0181-x t3750.M000115.1 NA t3750.T000332 INL_tree 6 mean internode length, Primary mean internode length of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH05g11 GDDH13v1.1 Chr14 23862660 23862911 NA 0 0 4.4 10.1007/s11295-008-0181-x t3750.M000186.1 NA t3750.T000333 INL1_trunk 6 mean internode length, Primary mean internode length of the shoots QTL analysis Starkrimson x Granny Smith F1 Hi05b09 NA NA 0 0 NA 0 0 4.41 10.1007/s11295-008-0181-x NA NA t3750.T000334 INL2_LSAS 6 mean internode length, Primary mean internode length on two long sylleptic axillary shoots QTL analysis Starkrimson x Granny Smith F1 Hi08f12 NA NA 0 0 NA 0 0 4.18 10.1007/s11295-008-0181-x NA NA t3750.T000335 INL2_tree 6 mean internode length, Primary mean internode length of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH05e04z NA NA 0 0 NA 0 0 5.24 10.1007/s11295-008-0181-x NA NA t3750.T000336 INL2_trunk 6 mean internode length, Primary mean internode length of the shoots QTL analysis Starkrimson x Granny Smith F1 NH033b NA NA 0 0 NA 0 0 4.5 10.1007/s11295-008-0181-x NA NA t3750.T000337 INLmax_LPAS 6 length of the longest internode, Primary length of the longest internode on two long proleptic axillary shoots QTL analysis Starkrimson x Granny Smith F1 CH05g11 GDDH13v1.1 Chr14 23862660 23862911 NA 0 0 3.9 10.1007/s11295-008-0181-x t3750.M000186.1 NA t3750.T000338 INLmax_LSAS 6 length of the longest internode, Primary length of the longest internode on two long sylleptic axillary shoots QTL analysis Starkrimson x Granny Smith F1 CH03d07 GDDH13v1.1 Chr06 8107463 8107649 NA 0 0 4.27 10.1007/s11295-008-0181-x t3750.M000115.1 NA t3750.T000339 INLmax_LSAS 6 length of the longest internode, Primary length of the longest internode on two long sylleptic axillary shoots QTL analysis Starkrimson x Granny Smith F1 CH05g11 GDDH13v1.1 Chr14 23862660 23862911 NA 0 0 5.38 10.1007/s11295-008-0181-x t3750.M000186.1 NA t3750.T000340 INLmax_tree 6 length of the longest internode, Primary length of the longest internode of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH03e03 GDDH13v1.1 Chr03 623918 624117 NA 0 0 4.62 10.1007/s11295-008-0181-x t3750.M000120.1 NA t3750.T000341 INLmax_tree 6 length of the longest internode, Primary length of the longest internode of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH05g11 GDDH13v1.1 Chr14 23862660 23862911 NA 0 0 4.04 10.1007/s11295-008-0181-x t3750.M000186.1 NA t3750.T000342 INLmax_tree 6 length of the longest internode, Primary length of the longest internode of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH01h01 GDDH13v1.1 Chr17 6515808 6515928 NA 0 0 4.11 10.1007/s11295-008-0181-x t3750.M000066.1 NA t3750.T000343 INLmax_trunk 6 length of the longest internode, Primary length of the longest internode of the shoots QTL analysis Starkrimson x Granny Smith F1 CH03e03 GDDH13v1.1 Chr03 623918 624117 NA 0 0 4.2 10.1007/s11295-008-0181-x t3750.M000120.1 NA t3750.T000344 INLmax_trunk 6 length of the longest internode, Primary length of the longest internode of the shoots QTL analysis Starkrimson x Granny Smith F1 CH03a09 GDDH13v1.1 Chr05 41424431 41424565 NA 0 0 3.98 10.1007/s11295-008-0181-x t3750.M000106.1 NA t3750.T000345 INLmax_trunk 6 length of the longest internode, Primary length of the longest internode of the shoots QTL analysis Starkrimson x Granny Smith F1 CH04f10 GDDH13v1.1 Chr16 33599859 33600046 NA 0 0 4.69 10.1007/s11295-008-0181-x t3750.M000151.1 NA t3750.T000346 INLmax04_LSAS 6 length of the longest internode, Primary length of the longest internode on two long sylleptic axillary shoots QTL analysis Starkrimson x Granny Smith F1 COL GDDH13v1.1 Chr10 36629269 36629491 NA 0 0 4.78 10.1007/s11295-008-0181-x t3750.M019271.1 NA t3750.T000347 INLmax04_tree 6 length of the longest internode, Primary length of the longest internode of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 COL GDDH13v1.1 Chr10 36629269 36629491 NA 0 0 5.59 10.1007/s11295-008-0181-x t3750.M019271.1 NA t3750.T000348 INLmax04_trunk 6 length of the longest internode, Primary length of the longest internode of the shoots QTL analysis Starkrimson x Granny Smith F1 AG11 NA NA 0 0 NA 0 0 4.46 10.1007/s11295-008-0181-x NA NA t3750.T000349 INLmax04_trunk 6 length of the longest internode, Primary length of the longest internode of the shoots QTL analysis Starkrimson x Granny Smith F1 MS06c09 NA NA 0 0 NA 0 0 5.21 10.1007/s11295-008-0181-x NA NA t3750.T000350 INLmax05_tree 6 length of the longest internode, Primary length of the longest internode of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 MS06c09 NA NA 0 0 NA 0 0 4.81 10.1007/s11295-008-0181-x NA NA t3750.T000351 INLmax05_tree 6 length of the longest internode, Primary length of the longest internode of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH05a04 NA NA 0 0 NA 0 0 5.84 10.1007/s11295-008-0181-x t3750.M000160.1 NA t3750.T000352 INLmax05_trunk 6 length of the longest internode, Primary length of the longest internode of the shoots QTL analysis Starkrimson x Granny Smith F1 MS06c09 NA NA 0 0 NA 0 0 5.35 10.1007/s11295-008-0181-x NA NA t3750.T000353 INLmax05_trunk 6 length of the longest internode, Primary length of the longest internode of the shoots QTL analysis Starkrimson x Granny Smith F1 CH05g11 GDDH13v1.1 Chr14 23862660 23862911 NA 0 0 4 10.1007/s11295-008-0181-x t3750.M000186.1 NA t3750.T000354 INLmax05_trunk 6 length of the longest internode, Primary length of the longest internode of the shoots QTL analysis Starkrimson x Granny Smith F1 CH05a04 NA NA 0 0 NA 0 0 4.89 10.1007/s11295-008-0181-x t3750.M000160.1 NA t3750.T000355 INN_LSAS 6 internode number, Primary internode number on two long sylleptic axillary shoots QTL analysis Starkrimson x Granny Smith F1 AT00174-SSR NA NA 0 0 NA 0 0 4.01 10.1007/s11295-008-0181-x NA NA t3750.T000356 INN_tree 6 internode number, Primary internode number of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 AT00174-SSR NA NA 0 0 NA 0 0 4.46 10.1007/s11295-008-0181-x NA NA t3750.T000357 INN2_LSAS 6 internode number, Primary internode number on two long sylleptic axillary shoots QTL analysis Starkrimson x Granny Smith F1 NZ24g04 NA NA 0 0 NA 0 0 4.23 10.1007/s11295-008-0181-x NA NA t3750.T000358 INN2_tree 6 internode number, Primary internode number of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 NZ23g04 NA NA 0 0 NA 0 0 5.88 10.1007/s11295-008-0181-x NA NA t3750.T000359 INN2_tree 6 internode number, Primary internode number of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH02d10a GDDH13v1.1 Chr16 554954 555170 NA 0 0 4.2 10.1007/s11295-008-0181-x t3750.M000089.1 NA t3750.T000360 L_trunk 6 growth length, primary growth length of the shoots QTL analysis Starkrimson x Granny Smith F1 U78948-SSR NA NA 0 0 NA 0 0 3.99 10.1007/s11295-008-0181-x NA NA t3750.T000361 Latents_tree 6 number of latent buds, Branching number of latent buds of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH01h01 GDDH13v1.1 Chr17 6515808 6515928 NA 0 0 3.9 10.1007/s11295-008-0181-x t3750.M000066.1 NA t3750.T000362 Latents_trunk 6 number of latent buds, Branching number of latent buds of the shoots QTL analysis Starkrimson x Granny Smith F1 Hi02f12 NA NA 0 0 NA 0 0 4.76 10.1007/s11295-008-0181-x NA NA t3750.T000363 Latents05_trunk 6 number of latent buds, Branching number of latent buds of the shoots QTL analysis Starkrimson x Granny Smith F1 Hi02f12 NA NA 0 0 NA 0 0 4.9 10.1007/s11295-008-0181-x NA NA t3750.T000364 Tdia_LPAS 6 top diameter, top diameter on two long proleptic axillary shoots in the secondary growth QTL analysis Starkrimson x Granny Smith F1 CH04e05 GDDH13v1.1 Chr07 17303721 17303894 NA 0 0 4.15 10.1007/s11295-008-0181-x t3750.M000144.1 NA t3750.T000365 Tdia04_tree 6 top diameter, top diameter of the shoots in the secondary growth on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 Hi05e07 NA NA 0 0 NA 0 0 4.27 10.1007/s11295-008-0181-x NA NA t3750.T000366 Tdia05_trunk 6 top diameter, top diameter of the shoots on the secondary growth QTL analysis Starkrimson x Granny Smith F1 Hi05b09 NA NA 0 0 NA 0 0 4.48 10.1007/s11295-008-0181-x NA NA t3750.T000367 Tdia06_LPAS 6 top diameter, top diameter on two long proleptic axillary shoots in the secondary growth QTL analysis Starkrimson x Granny Smith F1 CH03e03 GDDH13v1.1 Chr03 623918 624117 NA 0 0 4.86 10.1007/s11295-008-0181-x t3750.M000120.1 NA t3750.T000368 Tdia06_LPAS 6 top diameter, top diameter on two long proleptic axillary shoots in the secondary growth QTL analysis Starkrimson x Granny Smith F1 CH04e05 GDDH13v1.1 Chr07 17303721 17303894 NA 0 0 7.3 10.1007/s11295-008-0181-x t3750.M000144.1 NA t3750.T000369 Tdia06_LSAS 6 top diameter, top diameter on two long sylleptic axillary shoots in the secondary growth QTL analysis Starkrimson x Granny Smith F1 CH04e05 GDDH13v1.1 Chr07 17303721 17303894 NA 0 0 5.51 10.1007/s11295-008-0181-x t3750.M000144.1 NA t3750.T000370 Tdia06_LSAS 6 top diameter, top diameter on two long sylleptic axillary shoots in the secondary growth QTL analysis Starkrimson x Granny Smith F1 CH01c06c NA NA 0 0 NA 0 0 4.09 10.1007/s11295-008-0181-x NA NA t3750.T000371 Tdia06_tree 6 top diameter, top diameter of the shoots in the secondary growth on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH03e03 GDDH13v1.1 Chr03 623918 624117 NA 0 0 5.48 10.1007/s11295-008-0181-x t3750.M000120.1 NA t3750.T000372 Tdia06_tree 6 top diameter, Secondary top diameter of the shoots on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH04e05 GDDH13v1.1 Chr07 17303721 17303894 NA 0 0 7.99 10.1007/s11295-008-0181-x t3750.M000144.1 NA t3750.T000373 Tdia06_trunk 6 top diameter, top diameter of the shoots in the secondary growth QTL analysis Starkrimson x Granny Smith F1 CH03e03 GDDH13v1.1 Chr03 623918 624117 NA 0 0 4.55 10.1007/s11295-008-0181-x t3750.M000120.1 NA t3750.T000374 Tdia3_tree 6 top diameter, top diameter of the shoots in the secondary growth on the whole tree scale QTL analysis Starkrimson x Granny Smith F1 CH02c11 GDDH13v1.1 Chr10 24219973 24220206 NA 0 0 5.49 10.1007/s11295-008-0181-x t3750.M000086.1 NA t3750.T000375 6 INRS1, Main axis internode number (#), rootstock 1 st year QTL analysis Telamon x Braeburn F1 NA NA 0 0 NA 0 0 3.1 10.1007/s11032-006-9022-5 NA NA t3750.T000376 6 TotAsA SK QTL analysis Telamon x Braeburn F1 MdACS3x NA NA 0 0 NA 0 0 14.9 4.22 10.1104/pp.112.203786 NA NA t3750.T000377 6 Rate of browning at harvest QTL analysis Telamon x Braeburn F1 EAATMCCT160 NA NA 0 0 NA 0 0 7.8 10.1104/pp.106.083279 NA NA t3750.T000378 6 ILOR1, Main axis mean internode length (cm), own roots 1 st year QTL analysis Telamon x Braeburn F1 NA NA 0 0 NA 0 0 4.3 10.1007/s11032-006-9022-5 NA NA t3750.T000379 6 GIRS1, Growth increment (cm), rootstock 1 st year QTL analysis Telamon x Braeburn F1 NA NA 0 0 NA 0 0 5.7 10.1007/s11032-006-9022-5 NA NA t3750.T000380 6 AsA FL QTL analysis Telamon x Braeburn F1 CH03d12 GDDH13v1.1 Chr06 28680007 28680131 NA 0 0 35.1 4.79 10.1104/pp.112.203786 t3750.M000119.1 NA t3750.T000381 6 FW QTL analysis Telamon x Braeburn F1 EAAGMCAC215 NA NA 0 0 NA 0 0 14.6 4.15 10.1104/pp.112.203786 NA NA t3750.T000382 6 AsA SK QTL analysis Telamon x Braeburn F1 AP2-related NA NA 0 0 NA 0 0 27.9 4.36 10.1104/pp.112.203786 NA NA t3750.T000383 6 Total L-AA flesh QTL analysis Telamon x Braeburn F1 EACAMCCA319 NA NA 0 0 NA 0 0 8.8 10.1104/pp.106.083279 NA NA t3750.T000384 6 AsA FL QTL analysis Telamon x Braeburn F1 MdGGP1 NA NA 0 0 NA 0 0 47.3 8.5 10.1104/pp.112.203786 NA NA t3750.T000385 6 GSH (leaf) QTL analysis Telamon x Braeburn F1 28f4 GDDH13v1.1 Chr12 6194229 6194340 NA 0 0 4.16 10.1104/pp.112.203786 t3750.M000827.1 NA t3750.T000386 6 SBNOR1, Sylleptic branch number, own roots 1 st year QTL analysis Telamon x Braeburn F1 NA NA 0 0 NA 0 0 10.1007/s11032-006-9022-5 NA NA t3750.T000387 6 ILOR1, Main axis mean internode length (cm), own roots 1 st year QTL analysis Telamon x Braeburn F1 NA NA 0 0 NA 0 0 5.8 10.1007/s11032-006-9022-5 NA NA t3750.T000388 6 ILOR1, Main axis mean internode length (cm), own roots 1 st year QTL analysis Telamon x Braeburn F1 NA NA 0 0 NA 0 0 31.7 10.1007/s11032-006-9022-5 NA NA t3750.T000389 6 totAsA FL QTL analysis Telamon x Braeburn F1 EAACMCGG94 NA NA 0 0 NA 0 0 55.2 5.26 10.1104/pp.112.203786 NA NA t3750.T000390 6 Rate of browning at harvest QTL analysis Telamon x Braeburn F1 ECAAMCGG123 NA NA 0 0 NA 0 0 14.8 10.1104/pp.106.083279 NA NA t3750.T000391 6 FB10, green point QTL analysis X3263 x Belrene F1 GD_SNP00074 NA NA 0 0 NA 0 0 18 8.47 10.1111/j.1469-8137.2011.03823.x NA NA t3750.T000392 6 GP08, green point QTL analysis X3263 x Belrene F1 GD_SNP00194 NA NA 0 0 NA 0 0 31.5 8.17 10.1111/j.1469-8137.2011.03823.x NA NA t3750.T000393 6 GP08, green point QTL analysis X3263 x Belrene F1 GD_SNP01189 NA NA 0 0 NA 0 0 0.4 21.77 10.1111/j.1469-8137.2011.03823.x NA NA t3750.T000394 6 Fruit Self-Thinning, fruit set of spurs for year 2008 (Fruitset_C) QTL analysis X3263 x Belrene F1 CH02b07_XB NA NA 0 0 NA 0 0 9.48 10.1371/journal.pone.0091016 NA NA t3750.T000395 6 Fruit Self-Thinning, fruit set on long shoots for year 2008 (Fruitset_L) QTL analysis X3263 x Belrene F1 CH04a12_XB NA NA 0 0 NA 0 0 4.85 10.1371/journal.pone.0091016 NA NA t3750.T000396 6 Fruit Self-Thinning, the total number of inflorescences in 2008 (NIn_08, nbTinflo_08) QTL analysis X3263 x Belrene F1 GD_SNP01769 NA NA 0 0 NA 0 0 5.98 10.1371/journal.pone.0091016 t3750.M000514.1 NA t3750.T000397 6 VB08, green point QTL analysis X3263 x Belrene F1 GD_SNP00550 NA NA 0 0 NA 0 0 0 6.05 10.1111/j.1469-8137.2011.03823.x NA NA t3750.T000398 6 Fruit Self-Thinning, the number of fruits per terminal inflorescence in 2009 (NFI_09,nbfr_inflo_09) QTL analysis X3263 x Belrene F1 Hi08f12 NA NA 0 0 NA 0 0 4.33 10.1371/journal.pone.0091016 NA NA t3750.T000399 6 FB09, green point QTL analysis X3263 x Belrene F1 GD_SNP01584 NA NA 0 0 NA 0 0 13.4 4.15 10.1111/j.1469-8137.2011.03823.x NA NA t3750.T000400 6 phenolic compound content, Procyanidin B5 content estimated in juices (containing both flesh and skin) QTL analysis X5210 x X8402 F1 GD_SNP01678 NA NA 0 0 NA 0 0 7.77 10.1371/journal.pone.0107103 t3750.M000344.1 NA t3750.T000401 6 phenolic compound content, Procyanidin B5 content estimated in juices (containing both flesh and skin) QTL analysis X5210 x X8402 F1 Hi03d06 NA NA 0 0 NA 0 0 7.66 10.1371/journal.pone.0107103 NA NA t3750.T000402 6 phenolic compound content, Procyanidin Ca content estimated in juices (containing both flesh and skin) QTL analysis X5210 x X8402 F1 NZ05g08 NA NA 0 0 NA 0 0 3.3 10.1371/journal.pone.0107103 NA NA t3750.T000403 6 phenolic compound content, Other procyanidins content estimated in fruit extract (flesh and skin together) QTL analysis X5210 x X8402 F1 Ch03a04 GDDH13v1.1 Chr05 7454244 7454365 NA 0 0 5.09 10.1371/journal.pone.0107103 t3750.M000104.1 NA t3750.T000404 6 phenolic compound content, Epicatechin content estimated in juices (containing both flesh and skin) QTL analysis X5210 x X8402 F1 Ch03d07 GDDH13v1.1 Chr06 8107463 8107649 NA 0 0 4.19 10.1371/journal.pone.0107103 t3750.M000115.1 NA t3750.T000405 6 phenolic compound content, Isoquercitrin content estimated in fruit extract (flesh and skin together) QTL analysis X5210 x X8402 F1 GD_SNP00256 NA NA 0 0 NA 0 0 3.36 10.1371/journal.pone.0107103 t3750.M000466.1 NA t3750.T000406 6 phenolic compound content, Procyanidin B5 content estimated in juices (containing both flesh and skin) QTL analysis X5210 x X8402 F1 Hi04b12 NA NA 0 0 NA 0 0 2.93 10.1371/journal.pone.0107103 NA NA t3750.T000407 6 phenolic compound content, Procyanidin G content estimated in juices (containing both flesh and skin) QTL analysis X5210 x X8402 F1 Ch01f03b GDDH13v1.1 Chr09 9718373 9718544 NA 0 0 2.86 10.1371/journal.pone.0107103 t3750.M000060.1 NA t3750.T000408 6 phenolic compound content, Quercitrin content estimated in juices (containing both flesh and skin) QTL analysis X5210 x X8402 F1 Ch02c11 GDDH13v1.1 Chr10 24219973 24220206 NA 0 0 3.12 10.1371/journal.pone.0107103 t3750.M000086.1 NA t3750.T000409 6 phenolic compound content, Procyanidin Cc content estimated in juices (containing both flesh and skin) QTL analysis X5210 x X8402 F1 GD_SNP00662 NA NA 0 0 NA 0 0 2.74 10.1371/journal.pone.0107103 t3750.M000281.1 NA t3750.T000410 6 phenolic compound content, Procyanidin B1 content estimated in juices (containing both flesh and skin) QTL analysis X5210 x X8402 F1 GD_SNP02857 NA NA 0 0 NA 0 0 6.88 10.1371/journal.pone.0107103 t3750.M000306.1 NA t3750.T000411 6 phenolic compound content, Other procyanidins content estimated in fruit extract (flesh and skin together) QTL analysis X5210 x X8402 F1 NH009b NA NA 0 0 NA 0 0 4.64 10.1371/journal.pone.0107103 NA NA t3750.T000412 6 phenolic compound content, 4-p-coumaroylquinic acid content estimated in juices (containing both flesh and skin) QTL analysis X5210 x X8402 F1 GD_SNP00207 NA NA 0 0 NA 0 0 14.27 10.1371/journal.pone.0107103 t3750.M000464.1 NA t3750.T000413 6 phenolic compound content, Phloretin xyloglucoside content estimated in juices (containing both flesh and skin) QTL analysis X5210 x X8402 F1 GD_SNP01146 NA NA 0 0 NA 0 0 6.87 10.1371/journal.pone.0107103 t3750.M000298.1 NA t3750.T000414 6 phenolic compound content, the mean polymerization degree of procyanidins estimated in fruit extract (flesh and skin together) QTL analysis X5210 x X8402 F1 Ch05c06 GDDH13v1.1 Chr16 3896699 3896818 NA 0 0 5.95 10.1371/journal.pone.0107103 t3750.M000166.1 NA t3750.T000415 6 phenolic compound content, 5-caffeoylquinic acid content estimated in juices (containing both flesh and skin) QTL analysis X5210 x X8402 F1 Hi02f12 NA NA 0 0 NA 0 0 11.64 10.1371/journal.pone.0107103 NA NA t3750.T000416 MdSUT4.1 5 Fruit sugar RT-qPCR analysis Accessions NA 0 0 0 0 10.1186/s12870-020-02406-3 NA NA t3750.T000417 MdTAC1a 4 Branch angle qRT-PCR analysis Cultivars F1 NA 0 0 0 0 10.3390/ijms23031870 NA NA t3750.T000418 Field 5 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000419 Field 8 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 45 - 71 10.1186/s12870-022-03833-0 NA NA t3750.T000420 Field 11 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000421 Field 20 Months post inoculation - % Healthy tree 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 33 - 69 10.1186/s12870-022-03833-0 NA NA t3750.T000422 Field 20 Months post inoculation - % Cankered branches 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 35 - 59 10.1186/s12870-022-03833-0 NA NA t3750.T000423 Field 20 Months post inoculation - Canker Index 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000424 Shoot 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000425 Potted tree 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000426 Consensus region 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 45 - 57 10.1186/s12870-022-03833-0 NA NA t3750.T000427 Field 5 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000428 Field 8 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000429 Field 11 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000430 Field 20 Months post inoculation - % Healthy tree 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 30 - 42 10.1186/s12870-022-03833-0 NA NA t3750.T000431 Field 20 Months post inoculation - % Cankered branches 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 28 - 42 10.1186/s12870-022-03833-0 NA NA t3750.T000432 Field 20 Months post inoculation - Canker Index 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000433 Shoot 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000434 Potted tree 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000435 Consensus region 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 30 - 42 10.1186/s12870-022-03833-0 NA NA t3750.T000436 Field 5 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 3 - 25 10.1186/s12870-022-03833-0 NA NA t3750.T000437 Field 8 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 19 - 35 10.1186/s12870-022-03833-0 NA NA t3750.T000438 Field 11 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000439 Field 20 Months post inoculation - % Healthy tree 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000440 Field 20 Months post inoculation - % Cankered branches 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000441 Field 20 Months post inoculation - Canker Index 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000442 Shoot 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 35 - 61 10.1186/s12870-022-03833-0 NA NA t3750.T000443 Potted tree 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000444 Consensus region 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 19 - 25 10.1186/s12870-022-03833-0 NA NA t3750.T000445 Field 5 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000446 Field 8 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000447 Field 11 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000448 Field 20 Months post inoculation - % Healthy tree 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 35 - 49 10.1186/s12870-022-03833-0 NA NA t3750.T000449 Field 20 Months post inoculation - % Cankered branches 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000450 Field 20 Months post inoculation - Canker Index 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 1 - 27 10.1186/s12870-022-03833-0 NA NA t3750.T000451 Shoot 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000452 Potted tree 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 25 - 35 10.1186/s12870-022-03833-0 NA NA t3750.T000453 Consensus region 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 25 - 27 10.1186/s12870-022-03833-0 NA NA t3750.T000454 Field 5 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000455 Field 8 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 48 - 58 10.1186/s12870-022-03833-0 NA NA t3750.T000456 Field 11 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000457 Field 20 Months post inoculation - % Healthy tree 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000458 Field 20 Months post inoculation - % Cankered branches 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000459 Field 20 Months post inoculation - Canker Index 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000460 Shoot 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 50 - 54 10.1186/s12870-022-03833-0 NA NA t3750.T000461 Potted tree 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000462 Consensus region 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 50 - 54 10.1186/s12870-022-03833-0 NA NA t3750.T000463 Field 5 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 1 - 35 10.1186/s12870-022-03833-0 NA NA t3750.T000464 Field 8 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 71 - 103 10.1186/s12870-022-03833-0 NA NA t3750.T000465 Field 11 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 39 - 51 10.1186/s12870-022-03833-0 NA NA t3750.T000466 Field 20 Months post inoculation - % Healthy tree 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 87 - 99 10.1186/s12870-022-03833-0 NA NA t3750.T000467 Field 20 Months post inoculation - % Cankered branches 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000468 Field 20 Months post inoculation - Canker Index 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 1 - 33 10.1186/s12870-022-03833-0 NA NA t3750.T000469 Shoot 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000470 Potted tree 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000471 Consensus region 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 1,87 - 39,99 10.1186/s12870-022-03833-0 NA NA t3750.T000472 Field 5 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000473 Field 8 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000474 Field 11 Months post inoculation 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000475 Field 20 Months post inoculation - % Healthy tree 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000476 Field 20 Months post inoculation - % Cankered branches 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 7 - 37 10.1186/s12870-022-03833-0 NA NA t3750.T000477 Field 20 Months post inoculation - Canker Index 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 35 - 47 10.1186/s12870-022-03833-0 NA NA t3750.T000478 Shoot 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000479 Potted tree 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 10.1186/s12870-022-03833-0 NA NA t3750.T000480 Consensus region 1 Resistance to European canker FlexQTL™ (Markov chain Monte Car Multiparental population NA 0 0 0 0 35 - 37 10.1186/s12870-022-03833-0 NA NA t3750.T000481 1 16S - OTU644 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 439 - 442 11 10.3389/fpls.2023.1054914 NA NA t3750.T000482 1 16S - OTU27 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 358 - 370 12 10.3389/fpls.2023.1054914 NA NA t3750.T000483 1 16S - OTU38 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 28 - 33 10 10.3389/fpls.2023.1054914 NA NA t3750.T000484 1 16S - OTU38 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 21 - 32 11 10.3389/fpls.2023.1054914 NA NA t3750.T000485 1 16S - OTU128 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 111 - 122 13 10.3389/fpls.2023.1054914 NA NA t3750.T000486 1 16S - OTU950 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 326 - 334 14 10.3389/fpls.2023.1054914 NA NA t3750.T000487 1 16S - OTU950 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 57 - 63 12 10.3389/fpls.2023.1054914 NA NA t3750.T000488 1 16S - OTU52 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 102 - 114 14 10.3389/fpls.2023.1054914 NA NA t3750.T000489 1 16S - OTU52 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 129 - 132 10 10.3389/fpls.2023.1054914 NA NA t3750.T000490 1 16S - OTU52 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 74 - 84 10 10.3389/fpls.2023.1054914 NA NA t3750.T000491 1 16S - OTU18 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 573 - 581 10 10.3389/fpls.2023.1054914 NA NA t3750.T000492 1 16S - OTU18 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 0 - 5 10 10.3389/fpls.2023.1054914 NA NA t3750.T000493 1 16S - OTU135 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 513 - 516 11 10.3389/fpls.2023.1054914 NA NA t3750.T000494 1 16S - OTU135 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 115 - 120 11 10.3389/fpls.2023.1054914 NA NA t3750.T000495 1 16S - OTU124 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 261 - 267 14 10.3389/fpls.2023.1054914 NA NA t3750.T000496 1 16S - OTU124 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 505 - 508 10 10.3389/fpls.2023.1054914 NA NA t3750.T000497 1 16S - OTU5 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 332 - 340 9 10.3389/fpls.2023.1054914 NA NA t3750.T000498 1 16S - OTU53 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 2 - 7 11 10.3389/fpls.2023.1054914 NA NA t3750.T000499 1 16S - OTU462 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 293 - 299 12 10.3389/fpls.2023.1054914 NA NA t3750.T000500 1 16S - OTU462 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 573 - 579 11 10.3389/fpls.2023.1054914 NA NA t3750.T000501 1 16S - OTU42 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 394 - 399 9 10.3389/fpls.2023.1054914 NA NA t3750.T000502 1 16S - OTU42 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 179 - 179 11 10.3389/fpls.2023.1054914 NA NA t3750.T000503 1 16S - OTU42 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 153 - 156 10 10.3389/fpls.2023.1054914 NA NA t3750.T000504 1 16S - OTU922 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 292 - 304 15 10.3389/fpls.2023.1054914 NA NA t3750.T000505 1 16S - OTU85 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 367 - 374 11 10.3389/fpls.2023.1054914 NA NA t3750.T000506 1 16S - OTU85 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 421 - 429 11 10.3389/fpls.2023.1054914 NA NA t3750.T000507 1 16S - OTU85 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 229 - 232 11 10.3389/fpls.2023.1054914 NA NA t3750.T000508 1 16S - OTU100 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 203 - 213 12 10.3389/fpls.2023.1054914 NA NA t3750.T000509 1 16S - OTU3169 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 286 - 290 9 10.3389/fpls.2023.1054914 NA NA t3750.T000510 1 16S - OTU84 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 493 - 499 13 10.3389/fpls.2023.1054914 NA NA t3750.T000511 1 16S - OTU8 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 253 - 262 16 10.3389/fpls.2023.1054914 NA NA t3750.T000512 1 16S - OTU99 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 326 - 332 14 10.3389/fpls.2023.1054914 NA NA t3750.T000513 1 16S - OTU99 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 86 - 93 12 10.3389/fpls.2023.1054914 NA NA t3750.T000514 1 16S - OTU60 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 0 - 7 13 10.3389/fpls.2023.1054914 NA NA t3750.T000515 1 16S - PC16 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 63 - 75 13 10.3389/fpls.2023.1054914 NA NA t3750.T000516 1 16S - PC17 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 399 - 408 10 10.3389/fpls.2023.1054914 NA NA t3750.T000517 1 16S - PC7 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 0 - 1 10 10.3389/fpls.2023.1054914 NA NA t3750.T000518 1 ITS - OTU143 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 511 - 521 11 10.3389/fpls.2023.1054914 NA NA t3750.T000519 1 ITS - OTU35 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 436 - 440 11 10.3389/fpls.2023.1054914 NA NA t3750.T000520 1 ITS - OTU50 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 19 - 25 12 10.3389/fpls.2023.1054914 NA NA t3750.T000521 1 ITS - OTU12 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 402 - 409 10 10.3389/fpls.2023.1054914 NA NA t3750.T000522 1 ITS - OTU19 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 531 - 536 13 10.3389/fpls.2023.1054914 NA NA t3750.T000523 1 ITS - OTU19 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 402 - 402 12 10.3389/fpls.2023.1054914 NA NA t3750.T000524 1 ITS - OTU40 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 206 - 210 10 10.3389/fpls.2023.1054914 NA NA t3750.T000525 1 ITS - OTU62 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 197 - 199 10 10.3389/fpls.2023.1054914 NA NA t3750.T000526 1 ITS - OTU26 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 321 - 322 13 10.3389/fpls.2023.1054914 NA NA t3750.T000527 1 ITS - OTU71 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 141 - 141 11 10.3389/fpls.2023.1054914 NA NA t3750.T000528 1 ITS - OTU71 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 312 - 314 11 10.3389/fpls.2023.1054914 NA NA t3750.T000529 1 ITS - OTU310 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 15 - 20 12 10.3389/fpls.2023.1054914 NA NA t3750.T000530 1 ITS - OTU15 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 544 - 549 11 10.3389/fpls.2023.1054914 NA NA t3750.T000531 1 ITS - PC3 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 502 - 508 11 10.3389/fpls.2023.1054914 NA NA t3750.T000532 1 ITS - PC3 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 442 - 444 12 10.3389/fpls.2023.1054914 NA NA t3750.T000533 1 ITS - PC11 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 0 - 4 10 10.3389/fpls.2023.1054914 NA NA t3750.T000534 1 ITS - PC11 Composite Interval Mapping (CIM) full-siblings mapping population F1 NA 0 0 0 0 0 - 9 17 10.3389/fpls.2023.1054914 NA NA t3750.T000535 1 16S - OTU38 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 3 - 57 10.3389/fpls.2023.1054914 NA NA t3750.T000536 1 16S - OTU38 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 32 - 366 10.3389/fpls.2023.1054914 NA NA t3750.T000537 1 16S - OTU38 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 120 - 544 10.3389/fpls.2023.1054914 NA NA t3750.T000538 1 16S - OTU38 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 26 - 26 10.3389/fpls.2023.1054914 NA NA t3750.T000539 1 16S - OTU59 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 32 - 169 10.3389/fpls.2023.1054914 NA NA t3750.T000540 1 16S - OTU135 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 512 - 516 10.3389/fpls.2023.1054914 NA NA t3750.T000541 1 16S - OTU135 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 120 - 143 10.3389/fpls.2023.1054914 NA NA t3750.T000542 1 16S - OTU124 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 156 - 291 10.3389/fpls.2023.1054914 NA NA t3750.T000543 1 16S - OTU53 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 37 - 37 10.3389/fpls.2023.1054914 NA NA t3750.T000544 1 16S - OTU3169 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 20 - 37 10.3389/fpls.2023.1054914 NA NA t3750.T000545 1 16S - OTU84 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 440 - 514 10.3389/fpls.2023.1054914 NA NA t3750.T000546 1 16S - OTU20 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 37 - 37 10.3389/fpls.2023.1054914 NA NA t3750.T000547 1 16S - OTU8 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 32 - 386 10.3389/fpls.2023.1054914 NA NA t3750.T000548 1 16S - PC2 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 255 - 291 10.3389/fpls.2023.1054914 NA NA t3750.T000549 1 16S - PC2 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 37 - 37 10.3389/fpls.2023.1054914 NA NA t3750.T000550 1 16S - PC7 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 116 - 518 10.3389/fpls.2023.1054914 NA NA t3750.T000551 1 16S - PC7 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 8 - 47 10.3389/fpls.2023.1054914 NA NA t3750.T000552 1 ITS - OTU12 Kruskal-Wallist test full-siblings mapping population F1 NA 0 0 0 0 74 - 544 10.3389/fpls.2023.1054914 NA NA t3750.T000553 Rvi4 1 Scab resistance FlexQTL Genotypes NA 0 0 0 0 10.1007/s11032-023-01421-0 NA NA t3750.T000554 Rvi15 1 Scab resistance FlexQTL Genotypes NA 0 0 0 0 10.1007/s11032-023-01421-0 NA NA t3750.T000555 4 Time of initial vegetative budbreak Interval mapping ‘Golden Delicious’ × ‘Anna’ F1 NA 0 0 0 0 6.07 10.1007/s11295-009-0266-1 NA NA t3750.T000556 4 Time of initial vegetative budbreak Interval mapping ‘Golden Delicious’ × ‘Anna’ F1 NA 0 0 0 0 3.1 10.1007/s11295-009-0266-1 NA NA t3750.T000557 4 Time of initial vegetative budbreak Interval mapping ‘Golden Delicious’ × ‘Anna’ F1 NA 0 0 0 0 3.91 10.1007/s11295-009-0266-1 NA NA t3750.T000558 4 Time of initial vegetative budbreak Interval mapping ‘Golden Delicious’ × ‘Anna’ F1 NA 0 0 0 0 5.7 10.1007/s11295-009-0266-1 NA NA t3750.T000559 4 Time of initial vegetative budbreak Interval mapping ‘Golden Delicious’ × ‘Anna’ F1 NA 0 0 0 0 7 10.1007/s11295-009-0266-1 NA NA t3750.T000560 4 Time of initial vegetative budbreak Interval mapping ‘Sharpe’s Early’ × ‘Anna’− adult tress F1 NA 0 0 0 0 8.65 10.1007/s11295-009-0266-1 NA NA t3750.T000561 4 Time of initial vegetative budbreak Interval mapping ‘Sharpe’s Early’ × ‘Anna’− adult tress F1 NA 0 0 0 0 9.52 10.1007/s11295-009-0266-1 NA NA t3750.T000562 4 Time of initial vegetative budbreak Interval mapping ‘Sharpe’s Early’ × ‘Anna’− adult tress F1 NA 0 0 0 0 8.04 10.1007/s11295-009-0266-1 NA NA t3750.T000563 4 Time of initial vegetative budbreak Interval mapping ‘Sharpe’s Early’ × ‘Anna’− adult tress F1 NA 0 0 0 0 6.83 10.1007/s11295-009-0266-1 NA NA t3750.T000564 4 Time of initial vegetative budbreak Interval mapping ‘Sharpe’s Early’ × ‘Anna’− juvenile tress F1 NA 0 0 0 0 4.68 10.1007/s11295-009-0266-1 NA NA t3750.T000565 4 Time of initial vegetative budbreak Interval mapping ‘Sharpe’s Early’ × ‘Anna’− juvenile tress F1 NA 0 0 0 0 2.56 10.1007/s11295-009-0266-1 NA NA t3750.T000566 4 Time of initial vegetative budbreak Interval mapping ‘Sharpe’s Early’ × ‘Anna’− juvenile tress F1 NA 0 0 0 0 4.44 10.1007/s11295-009-0266-1 NA NA t3750.T000567 4 Time of initial vegetative budbreak Interval mapping ‘Sharpe’s Early’ × ‘Anna’− juvenile tress F1 NA 0 0 0 0 4.49 10.1007/s11295-009-0266-1 NA NA