t4039.T000001 FaOH_1.1 5 Falcarinol (FaOH) Interval mapping ‘345B’ × ‘P_1870’ F2 K0514 NA 1 5406415 0 K1504 0 0 22,4 4,34 10.1186/s12870-022-03484-1 NA NA t4039.T000002 FaOH_3.1 5 Falcarinol (FaOH) Interval mapping ‘345B’ × ‘P_1870’ F2 K1064 NA 3 45134655 0 K0474 0 0 42,8 8,99 10.1186/s12870-022-03484-1 NA NA t4039.T000003 FaOH_4.1 5 Falcarinol (FaOH) Interval mapping ‘345B’ × ‘P_1870’ F2 K3873 NA 4 20 0 K1382 0 0 40,4 14,48 10.1186/s12870-022-03484-1 NA NA t4039.T000004 FaOH_5.1 5 Falcarinol (FaOH) Interval mapping ‘345B’ × ‘P_1870’ F2 K2562 NA 5 22019928 0 mCA4358 0 0 33,3 3,64 10.1186/s12870-022-03484-1 NA NA t4039.T000005 FaOH_8.1 5 Falcarinol (FaOH) Interval mapping ‘345B’ × ‘P_1870’ F2 K2093 NA 8 5214614 0 K1770 0 0 21,5 3,89 10.1186/s12870-022-03484-1 NA NA t4039.T000006 FaOH_9.1 5 Falcarinol (FaOH) Interval mapping ‘345B’ × ‘P_1870’ F2 K0850 NA 9 6376534 0 K3568 0 0 16,1 16,71 10.1186/s12870-022-03484-1 NA NA t4039.T000007 FaDOH_1.1 5 Falcarindiol (FaDOH) Interval mapping ‘345B’ × ‘P_1870’ F2 K0514 NA 1 21266018 0 K1504 0 0 31,9 4,45 10.1186/s12870-022-03484-1 NA NA t4039.T000008 FaDOH_4.1 5 Falcarindiol (FaDOH) Interval mapping ‘345B’ × ‘P_1870’ F2 K3873 NA 4 15954204 0 K0154 0 0 35,5 21,81 10.1186/s12870-022-03484-1 NA NA t4039.T000009 FaDOH_5.1 5 Falcarindiol (FaDOH) Interval mapping ‘345B’ × ‘P_1870’ F2 K0871 NA 5 33366279 0 K1404 0 0 39,4 7,06 10.1186/s12870-022-03484-1 NA NA t4039.T000010 FaDOH_9.1 5 Falcarindiol (FaDOH) Interval mapping ‘345B’ × ‘P_1870’ F2 K0850 NA 9 6376534 0 K3359 0 0 16,1 40,35 10.1186/s12870-022-03484-1 NA NA t4039.T000011 Ratio_3.1 5 FaDOH/FaOH Interval mapping ‘345B’ × ‘P_1870’ F2 K0980 NA 3 45134655 0 K1640 0 0 42,8 17,27 10.1186/s12870-022-03484-1 NA NA t4039.T000012 Ratio_8.1 5 FaDOH/FaOH Interval mapping ‘345B’ × ‘P_1870’ F2 K2093 NA 8 5214614 0 K1770 0 0 21,5 5,00 10.1186/s12870-022-03484-1 NA NA t4039.T000013 MLL2-1 4 Maximum leaf length Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 44.9 13.9 10.3390/plants11030391 NA NA t4039.T000014 MLL1-1 4 Maximum leaf length Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 22.8 5.2 10.3390/plants11030391 NA NA t4039.T000015 MLL5-1 4 Maximum leaf length Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 37.3 5.5 10.3390/plants11030391 NA NA t4039.T000016 LW1-1 4 Leaf weight Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 0.5 7 10.3390/plants11030391 NA NA t4039.T000017 LW1-2 4 Leaf weight Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 37.9 6.3 10.3390/plants11030391 NA NA t4039.T000018 LW9-1 4 Leaf weight Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 39.4 5.6 10.3390/plants11030391 NA NA t4039.T000019 LW2-1 4 Leaf weight Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 54.1 4.4 10.3390/plants11030391 NA NA t4039.T000020 LW2-2 4 Leaf weight Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 64.2 5.7 10.3390/plants11030391 NA NA t4039.T000021 RL2-1 4 Root length Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 44.9 13.5/10.7 10.3390/plants11030391 NA NA t4039.T000022 RL2-2 4 Root length Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 35.2 11.1 10.3390/plants11030391 NA NA t4039.T000023 RSD2-1 4 Maximum diameter of the root shoulderMaximum diameter ofthe root shoulder Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 35.2 12 10.3390/plants11030391 NA NA t4039.T000024 RSD2-2 4 Maximum diameter of the root shoulderMaximum diameter ofthe root shoulder Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 44.9 16.6/9.7 10.3390/plants11030391 NA NA t4039.T000025 RMD3-1 4 Root middle diameter Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 96.3 15 10.3390/plants11030391 NA NA t4039.T000026 RMD2-1 4 Root middle diameter Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 44.9 11.8 10.3390/plants11030391 NA NA t4039.T000027 RTD2-1 4 Diameter of root tip above the 1 cm position Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 4.9 4.5 10.3390/plants11030391 NA NA t4039.T000028 RW1-1 4 Root weight Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 35.5 4.1 10.3390/plants11030391 NA NA t4039.T000029 RW5-1 4 Root weight Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 158.8 4.5 10.3390/plants11030391 NA NA t4039.T000030 RW7-1 4 Root weight Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 124.9 4.4 10.3390/plants11030391 NA NA t4039.T000031 RW8-1 4 Root weight Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 155.9 5.4 10.3390/plants11030391 NA NA t4039.T000032 PW1-1 4 Weight of the leaves and root Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 36.5 4.9 10.3390/plants11030391 NA NA t4039.T000033 PW2-1 4 Weight of the leaves and root Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 44.9 7.1 10.3390/plants11030391 NA NA t4039.T000034 PW4-1 4 Weight of the leaves and root Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 160.1 5.9 10.3390/plants11030391 NA NA t4039.T000035 PW8-1 4 Weight of the leaves and root Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 154.9 5.2 10.3390/plants11030391 NA NA t4039.T000036 DMC2-1 4 Dry matter content of the root Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 44.9 12.3/20.9 10.3390/plants11030391 NA NA t4039.T000037 DMC2-2 4 Dry matter content of the root Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 35.2 16.1 10.3390/plants11030391 NA NA t4039.T000038 DMC5-1 4 Dry matter content of the root Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 159.7 18.9 10.3390/plants11030391 NA NA t4039.T000039 iSM2-1 4 Maximum diameter of the root shoulder/root middle diameter (iSM) Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 35.2 25.1/22.3 10.3390/plants11030391 NA NA t4039.T000040 iSM2-2 4 Maximum diameter of the root shoulder/root middle diameter (iSM) Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 44.9 29.7/27.0 10.3390/plants11030391 NA NA t4039.T000041 iSM3-1 4 Maximum diameter of the root shoulder/root middle diameter (iSM) Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 94.9 15.5 10.3390/plants11030391 NA NA t4039.T000042 iST7-1 4 Maximum diameter of the root shoulder/diameter of root tip above the 1 cm (iST) Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 84.5 11.2 10.3390/plants11030391 NA NA t4039.T000043 iST5-1 4 Maximum diameter of the root shoulder/diameter of root tip above the 1 cm (iST) Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 159.7 12.8 10.3390/plants11030391 NA NA t4039.T000044 iMT7-1 4 Root middle diameter/diameter of root tip above the 1 cm position (iMT) Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 84.5 11.2 10.3390/plants11030391 NA NA t4039.T000045 iMT2-1 4 Root middle diameter/diameter of root tip above the 1 cm position (iMT) Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 35.2 11 10.3390/plants11030391 NA NA t4039.T000046 iMT2-2 4 Root middle diameter/diameter of root tip above the 1 cm position (iMT) Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 44.9 15.7 10.3390/plants11030391 NA NA t4039.T000047 iSL3-1 4 Maximum diameter of the root shoulder/root length (iSL) Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 96.3 11.9 10.3390/plants11030391 NA NA t4039.T000048 iSL2-1 4 Maximum diameter of the root shoulder/root length (iSL) Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 44.9 12.1 10.3390/plants11030391 NA NA t4039.T000049 iML3-1 4 Root middle diameter/root length (iML) Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 96.3 6.9 10.3390/plants11030391 NA NA t4039.T000050 iTL2-1 4 Diameter of root tip above the 1 cm position/root length (iTL) Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 37.9 8.2 10.3390/plants11030391 NA NA t4039.T000051 iTL2-2 4 Diameter of root tip above the 1 cm position/root length (iTL) Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 45.8 7.3 10.3390/plants11030391 NA NA t4039.T000052 iTL2-3 4 Diameter of root tip above the 1 cm position/root length (iTL) Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 76.1 5 10.3390/plants11030391 NA NA t4039.T000053 iLR3-1 4 leaf weight/root weight (iLR) Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 96.7 5.7 10.3390/plants11030391 NA NA t4039.T000054 iLR6-1 4 leaf weight/root weight (iLR) Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 25.1 6.3 10.3390/plants11030391 NA NA t4039.T000055 iLR6-2 4 leaf weight/root weight (iLR) Interval mapping “Songzi” × “Amsterdam forcing” BIL NA 0 0 0 0 87.1 6.2 10.3390/plants11030391 NA NA t4039.T000056 bt-2.1 5 β-carotene Interval mapping B493 × Z007 F3 S2_35336303 NA 2 32 0 0 0 118 13.7 10.1007/s00122-021-03901-3 NA NA t4039.T000057 bt-3.1 5 β-carotene Interval mapping B493 × Z007 F3 S3_4408266 NA 3 4 0 0 0 35 31.6 10.1007/s00122-021-03901-3 NA NA t4039.T000058 bt-7.1 5 β-carotene Interval mapping B493 × Z007 F3 S7_6961456 NA 7 6 0 0 0 33 24.3 10.1007/s00122-021-03901-3 NA NA t4039.T000059 al-3.1 5 α-carotene Interval mapping B493 × Z007 F3 S3_16337133 NA 3 4 0 0 0 114 6.5 10.1007/s00122-021-03901-3 NA NA t4039.T000060 al-7.1 5 α-carotene Interval mapping B493 × Z007 F3 S7_6195852 NA 7 6 0 0 0 31 42.9 10.1007/s00122-021-03901-3 NA NA t4039.T000061 lt-2.1 5 Lutein Interval mapping B493 × Z007 F3 S2_42125003 NA 2 42 0 0 0 190 9.4 10.1007/s00122-021-03901-3 NA NA t4039.T000062 pt-2.1 5 Phytoene Interval mapping B493 × Z007 F3 S2_34544080 NA 2 32 0 0 0 112 12.7 10.1007/s00122-021-03901-3 NA NA t4039.T000063 pt-3.1 5 Phytoene Interval mapping B493 × Z007 F3 S3_4798330 NA 3 3 0 0 0 36 30.2 10.1007/s00122-021-03901-3 NA NA t4039.T000064 pt-7.1 5 Phytoene Interval mapping B493 × Z007 F3 S7_6961456 NA 7 6 0 0 0 34 17.6 10.1007/s00122-021-03901-3 NA NA t4039.T000065 zt-2.1 5 ζ-carotene Interval mapping B493 × Z007 F3 S2_35336303 NA 2 31 0 0 0 118 11.7 10.1007/s00122-021-03901-3 NA NA t4039.T000066 zt-3.1 5 ζ-carotene Interval mapping B493 × Z007 F3 S3_4010876 NA 3 4 0 0 0 31 44.5 10.1007/s00122-021-03901-3 NA NA t4039.T000067 zt-7.1 5 ζ-carotene Interval mapping B493 × Z007 F3 S7_6195852 NA 7 6 0 0 0 29 6.3 10.1007/s00122-021-03901-3 NA NA t4039.T000068 tl-2.1 5 Total Carotenoids Interval mapping B493 × Z007 F3 S2_32454540 NA 2 32 0 0 0 112 13.4 10.1007/s00122-021-03901-3 NA NA t4039.T000069 tl-3.1 5 Total Carotenoids Interval mapping B493 × Z007 F3 S3_4010876 NA 3 3 0 0 0 32 30 10.1007/s00122-021-03901-3 NA NA t4039.T000070 tl-7.1 5 Total Carotenoids Interval mapping B493 × Z007 F3 S7_6195738 NA 7 6 0 0 0 33 25.8 10.1007/s00122-021-03901-3 NA NA t4039.T000071 rt-2.1 5 β-carotene:Total Interval mapping B493 × Z007 F3 S2_13504076 NA 2 11 0 0 0 33 17.2 10.1007/s00122-021-03901-3 NA NA t4039.T000072 rt-3.1 5 β-carotene:Total Interval mapping B493 × Z007 F3 S3_4408266 NA 3 4 0 0 0 35 77.2 10.1007/s00122-021-03901-3 NA NA t4039.T000073 rt-7.1 5 β-carotene:Total Interval mapping B493 × Z007 F3 S7_12987570 NA 7 6 0 0 0 34 11 10.1007/s00122-021-03901-3 NA NA t4039.T000074 5 Phloem-Total anthocyanin content Interval mapping ‘3242’ F2 3_28568500 NA 3 27356688 0 3 29895002 0 65.34 25 10.1007/s00122-019-03366-5 NA NA t4039.T000075 5 Phloem-Total anthocyanin content Interval mapping ‘3242’ F2 3_3324326 NA 3 2896034 0 3 5386392 0 20 18.2 10.1007/s00122-019-03366-5 NA NA t4039.T000076 5 Phloem-Total anthocyanin content Interval mapping ‘3242’ F2 7_2581400 NA 7 609767 0 7 8144129 0 13.52 6.5 10.1007/s00122-019-03366-5 NA NA t4039.T000077 5 Phloem-Total anthocyanin content Interval mapping ‘3242’ F2 4_28623267 NA 4 24098779 0 4 32528501 0 69.99 5.8 10.1007/s00122-019-03366-5 NA NA t4039.T000078 5 Phloem-Total acylated anthocyanins (%) Interval mapping ‘3242’ F2 3_3394710 NA 3 3394611 0 3 4075544 0 21.74 59.6 10.1007/s00122-019-03366-5 NA NA t4039.T000079 5 Phloem-Total acylated anthocyanins (%) Interval mapping ‘3242’ F2 3_28568500 NA 3 26273113 0 3 29277488 0 65.34 39.3 10.1007/s00122-019-03366-5 NA NA t4039.T000080 5 Phloem-Total non-acylated anthocyanins (%) Interval mapping ‘3242’ F2 3_28568500 NA 3 27356688 0 3 29277488 0 65.34 38.4 10.1007/s00122-019-03366-5 NA NA t4039.T000081 5 Phloem-Total non-acylated anthocyanins (%) Interval mapping ‘3242’ F2 3_4002091 NA 3 3394611 0 3 4075544 0 22.91 32.8 10.1007/s00122-019-03366-5 NA NA t4039.T000082 5 Phloem-Cyanidin-3-(2″-xylose-galactoside) Interval mapping ‘3242’ F2 3_26660889 NA 3 26273113 0 3 29277488 0 61 40.7 10.1007/s00122-019-03366-5 NA NA t4039.T000083 5 Phloem-Cyanidin-3-(2″-xylose-galactoside) (%) Interval mapping ‘3242’ F2 3_3394710 NA 3 3394611 0 3 4075544 0 21.74 36.9 10.1007/s00122-019-03366-5 NA NA t4039.T000084 5 Phloem-Cyanidin-3-(2″-xylose-6-glucose-galactoside) (%) Interval mapping ‘3242’ F2 K2590b NA 3 27356688 0 3 29277488 0 65 36.8 10.1007/s00122-019-03366-5 NA NA t4039.T000085 5 Phloem-Cyanidin-3-(2″-xylose-6-glucose-galactoside) (%) Interval mapping ‘3242’ F2 3_3394710 NA 3 3394611 0 3 4075544 0 21.74 27.7 10.1007/s00122-019-03366-5 NA NA t4039.T000086 5 Phloem-Cyanidin-3-(2″-xylose-6-glucose-galactoside) (%) Interval mapping ‘3242’ F2 4_26528512 NA 4 22698558 0 4 27311183 0 64.39 6.8 10.1007/s00122-019-03366-5 NA NA t4039.T000087 5 Phloem-Cyanidin-3-(2″-xylose-6-glucose-galactoside) (%) Interval mapping ‘3242’ F2 7_5220521 NA 7 609767 0 7 13193780 0 22.07 6.6 10.1007/s00122-019-03366-5 NA NA t4039.T000088 5 Phloem-Cyanidin-3-(2″-xylose-6″-sinapoyl-glucose-galactoside (%) Interval mapping ‘3242’ F2 3_3394710 NA 3 3394611 0 3 4075544 0 21.74 50 10.1007/s00122-019-03366-5 NA NA t4039.T000089 5 Phloem-Cyanidin-3-(2″-xylose-6″-sinapoyl-glucose-galactoside (%) Interval mapping ‘3242’ F2 K2590b NA 3 26273113 0 3 29277488 0 64.83 34 10.1007/s00122-019-03366-5 NA NA t4039.T000090 5 Phloem-Cyanidin-3-(2″-xylose-6″-sinapoyl-glucose-galactoside (%) Interval mapping ‘3242’ F2 6_36100743 NA 6 34032205 0 6 36100743 0 111.59 3.2 10.1007/s00122-019-03366-5 NA NA t4039.T000091 5 Phloem-Cyanidin-3-(2″-xylose-6″-feruloyl-glucose-galactoside) (%) Interval mapping ‘3242’ F2 3_4002091 NA 3 3324326 0 3 4075544 0 22.91 38.3 10.1007/s00122-019-03366-5 NA NA t4039.T000092 5 Phloem-Cyanidin-3-(2″-xylose-6″-feruloyl-glucose-galactoside) (%) Interval mapping ‘3242’ F2 3_26273113 NA 3 26273113 0 3 26660889 0 60 32.1 10.1007/s00122-019-03366-5 NA NA t4039.T000093 5 Phloem-Cyanidin-3-(2″-xylose-6″-feruloyl-glucose-galactoside) (%) Interval mapping ‘3242’ F2 4_8784350 NA 4 6010436 0 4 13447860 0 15 4.2 10.1007/s00122-019-03366-5 NA NA t4039.T000094 5 Phloem-Cyanidin-3-(2″-xylose-6″-(4-coumaroyl)glucose-galactoside) (%) Interval mapping ‘3242’ F2 3_4002091 NA 3 3394589 0 3 4844562 0 22.91 6 10.1007/s00122-019-03366-5 NA NA t4039.T000095 5 Phloem-Cyanidin-3-(2″-xylose-6″-(4-coumaroyl)glucose-galactoside) (%) Interval mapping ‘3242’ F2 3_10027571 NA 3 7925825 0 3 34211276 0 31.7 3.9 10.1007/s00122-019-03366-5 NA NA t4039.T000096 5 Phloem-Total acylated anthocyanins Interval mapping ‘3242’ F2 3_3394710 NA 3 2896034 0 3 4844562 0 21.74 21.1 10.1007/s00122-019-03366-5 NA NA t4039.T000097 5 Phloem-Total acylated anthocyanins Interval mapping ‘3242’ F2 3_28568500 NA 3 27356688 0 3 29895002 0 65.34 18.7 10.1007/s00122-019-03366-5 NA NA t4039.T000098 5 Phloem-Total non-acylated anthocyanins Interval mapping ‘3242’ F2 3_28568500 NA 3 27356688 0 3 30415643 0 65.34 21.3 10.1007/s00122-019-03366-5 NA NA t4039.T000099 5 Phloem-Total non-acylated anthocyanins Interval mapping ‘3242’ F2 3_3324326 NA 3 2896034 0 3 11598279 0 21.74 8.3 10.1007/s00122-019-03366-5 NA NA t4039.T000100 5 Phloem-Total non-acylated anthocyanins Interval mapping ‘3242’ F2 4_26528512 NA 4 24410562 0 4 29043565 0 64.39 6.2 10.1007/s00122-019-03366-5 NA NA t4039.T000101 5 Phloem-Cyanidin-3-(2″-xylose-galactoside) Interval mapping ‘3242’ F2 3_28568500 NA 3 27356688 0 3 29895002 0 65.34 27.6 10.1007/s00122-019-03366-5 NA NA t4039.T000102 5 Phloem-Cyanidin-3-(2″-xylose-galactoside) Interval mapping ‘3242’ F2 3_3324326 NA 3 2896034 0 3 5386392 0 20 11.4 10.1007/s00122-019-03366-5 NA NA t4039.T000103 5 Phloem-Cyanidin-3-(2″-xylose-galactoside) Interval mapping ‘3242’ F2 4_26528512 NA 4 25231548 0 4 27200449 0 64.39 7.6 10.1007/s00122-019-03366-5 NA NA t4039.T000104 5 Phloem-Cyanidin-3-(2″-xylose-galactoside) Interval mapping ‘3242’ F2 7_2581400 NA 7 609767 0 7 8144129 0 13.52 6.8 10.1007/s00122-019-03366-5 NA NA t4039.T000105 5 Phloem-Cyanidin-3-(2″-xylose-6-glucose-galactoside) Interval mapping ‘3242’ F2 3_28568500 NA 3 27356688 0 3 30415643 0 65.34 28.3 10.1007/s00122-019-03366-5 NA NA t4039.T000106 5 Phloem-Cyanidin-3-(2″-xylose-6-glucose-galactoside) Interval mapping ‘3242’ F2 7_5220521 NA 7 1965285 0 7 8144129 0 21 10.7 10.1007/s00122-019-03366-5 NA NA t4039.T000107 5 Phloem-Cyanidin-3-(2″-xylose-6-glucose-galactoside) Interval mapping ‘3242’ F2 3_2645888 NA 3 2501427 0 3 4844562 0 16.7 9.6 10.1007/s00122-019-03366-5 NA NA t4039.T000108 5 Phloem-Cyanidin-3-(2″-xylose-6-glucose-galactoside) Interval mapping ‘3242’ F2 4_26528512 NA 4 24410562 0 4 30359233 0 64.39 9.5 10.1007/s00122-019-03366-5 NA NA t4039.T000109 5 Phloem-Cyanidin-3-(2″-xylose-6″-sinapoyl-glucose-galactoside) Interval mapping ‘3242’ F2 3_28568500 NA 3 27356688 0 3 29895002 0 65.34 17.3 10.1007/s00122-019-03366-5 NA NA t4039.T000110 5 Phloem-Cyanidin-3-(2″-xylose-6″-sinapoyl-glucose-galactoside) Interval mapping ‘3242’ F2 3_3394710 NA 3 2896034 0 3 4844562 0 21.74 16.6 10.1007/s00122-019-03366-5 NA NA t4039.T000111 5 Phloem-Cyanidin-3-(2″-xylose-6″-feruloyl-glucose-galactoside) Interval mapping ‘3242’ F2 3_3394710 NA 3 3394611 0 3 4075544 0 21.74 30.2 10.1007/s00122-019-03366-5 NA NA t4039.T000112 5 Phloem-Cyanidin-3-(2″-xylose-6″-feruloyl-glucose-galactoside) Interval mapping ‘3242’ F2 3_28568500 NA 3 27356688 0 3 29277488 0 65.34 29.8 10.1007/s00122-019-03366-5 NA NA t4039.T000113 5 Phloem-Cyanidin-3-(2″-xylose-6″-(4-coumaroyl)glucose-galactoside) Interval mapping ‘3242’ F2 3_3324326 NA 3 2501427 0 3 11598279 0 20 8.8 10.1007/s00122-019-03366-5 NA NA t4039.T000114 5 Phloem-Cyanidin-3-(2″-xylose-6″-(4-coumaroyl)glucose-galactoside) Interval mapping ‘3242’ F2 3_29277488 NA 3 25946244 0 3 30638001 0 66.37 5.5 10.1007/s00122-019-03366-5 NA NA t4039.T000115 5 Xylem-Total anthocyanin Interval mapping ‘3242’ F2 K2590b NA 3 26660889 0 3 29895002 0 64 23.29 10.1007/s00122-019-03366-5 NA NA t4039.T000116 5 Xylem-Total non-acylated anthocyanins Interval mapping ‘3242’ F2 K2590b NA 3 26273113 0 3 30638001 0 64 14.69 10.1007/s00122-019-03366-5 NA NA t4039.T000117 5 Xylem-Total acylated anthocyanins Interval mapping ‘3242’ F2 K2590b NA 3 26273113 0 3 29895002 0 64 22.92 10.1007/s00122-019-03366-5 NA NA t4039.T000118 5 Xylem-Cyanidin-3-(2″-xylose-galactoside) (%) Interval mapping ‘3242’ F2 K2590b NA 3 26660889 0 3 29895002 0 64 14.61 10.1007/s00122-019-03366-5 NA NA t4039.T000119 5 Xylem-Cyanidin-3-(2″-xylose-6-glucose-galactoside) (%) Interval mapping ‘3242’ F2 3_26273113 NA 3 25946244 0 3 26273113 0 60 12.99 10.1007/s00122-019-03366-5 NA NA t4039.T000120 5 Xylem-Cyanidin-3-(2″-xylose-6″-sinapoyl-glucose-galactoside) (%) Interval mapping ‘3242’ F2 K2590b NA 3 26660889 0 3 29895002 0 64 21.72 10.1007/s00122-019-03366-5 NA NA t4039.T000121 5 Xylem-Cyanidin-3-(2″-xylose-6″-feruloyl-glucose-galactoside) (%) Interval mapping ‘3242’ F2 3_28568500 NA 3 26660889 0 3 29895002 0 65.34 22.91 10.1007/s00122-019-03366-5 NA NA t4039.T000122 5 Xylem-Cyanidin-3-(2″-xylose-6″-(4-coumaroyl)glucose-galactoside) (%) Interval mapping ‘3242’ F2 3_26660889 NA 3 26273113 0 3 41368863 0 62 6.46 10.1007/s00122-019-03366-5 NA NA t4039.T000123 Or 5 Carotenoid presence GWAS 154 wild, 520 domesticated accessions NA 3 5224824 0 0 0 10.1534/genetics.118.301299 NA NA t4039.T000124 QTL_r_aPHEL_9 5 a-phellandrene GWAS 85 accessions DCARv2_Chr9_16405410 NA 9 16405410 0 0 0 6.449907951164135 10.1534/genetics.118.301299 NA NA t4039.T000125 QTL_r_aPINE_6 5 b-pinene GWAS 85 accessions DCARv2_Chr6_6015083 NA 6 6015083 0 0 0 7.061205525391556 10.1534/genetics.118.301299 NA NA t4039.T000126 QTL_r_aPINE_6 5 b-pinene GWAS 85 accessions DCARv2_Chr6_6015140 NA 6 6015140 0 0 0 6.824502972614938 10.1534/genetics.118.301299 NA NA t4039.T000127 QTL_r_aPINE_6 5 b-pinene GWAS 85 accessions DCARv2_Chr6_6015279 NA 6 6015279 0 0 0 7.0280437794032515 10.1534/genetics.118.301299 NA NA t4039.T000128 QTL_r_bBISA_9 5 b-bisabolene GWAS 85 accessions DCARv2_Chr9_20559777 NA 9 20559777 0 0 0 6.571479535788743 10.1534/genetics.118.301299 NA NA t4039.T000129 QTL_r_bMYRC_7 5 b-myrcene GWAS 85 accessions DCARv2_Chr7_34705064 NA 7 34705064 0 0 0 5.911228710738172 10.1534/genetics.118.301299 NA NA t4039.T000130 QTL_r_BORN_5.1 5 Borneol GWAS 85 accessions DCARv2_Chr5_30630334 NA 5 30630334 0 0 0 6.181369173713602 10.1534/genetics.118.301299 NA NA t4039.T000131 QTL_r_BORN_5.2 5 Borneol GWAS 85 accessions DCARv2_Chr5_41039603 NA 5 41039603 0 0 0 6.867788674863017 10.1534/genetics.118.301299 NA NA t4039.T000132 QTL_r_BORNAc_5.1 5 Bornyl acetate GWAS 85 accessions DCARv2_Chr5_30630334 NA 5 30630334 0 0 0 6.028413482016966 10.1534/genetics.118.301299 NA NA t4039.T000133 QTL_r_BORNAc_5.2 5 Bornyl acetate GWAS 85 accessions DCARv2_Chr5_41039603 NA 5 41039603 0 0 0 6.528759057411959 10.1534/genetics.118.301299 NA NA t4039.T000134 QTL_r_bPINE_3 5 b-pinene GWAS 85 accessions DCARv2_Chr3_271970 NA 3 271970 0 0 0 6.054883079691684 10.1534/genetics.118.301299 NA NA t4039.T000135 QTL_r_bPINE_3 5 b-pinene GWAS 85 accessions DCARv2_Chr3_272004 NA 3 272004 0 0 0 6.054883079691684 10.1534/genetics.118.301299 NA NA t4039.T000136 QTL_r_bPINE_7 5 b-pinene GWAS 85 accessions DCARv2_Chr7_15005706 NA 7 15005706 0 0 0 6.261342059839215 10.1534/genetics.118.301299 NA NA t4039.T000137 QTL_r_bPINE_8 5 b-pinene GWAS 85 accessions DCARv2_Chr8_28567181 NA 8 28567181 0 0 0 6.63852866228063 10.1534/genetics.118.301299 NA NA t4039.T000138 QTL_r_gTERP_8 5 gTERP GWAS 85 accessions DCARv2_Chr8_17369159 NA 8 17369159 0 0 0 6.0330097106822524 10.1534/genetics.118.301299 NA NA t4039.T000139 QTL_r_OCIM_1 5 Ocimene GWAS 85 accessions DCARv2_Chr1_31849093 NA 1 31849093 0 0 0 5.9734320096487314 10.1534/genetics.118.301299 NA NA t4039.T000140 QTL_r_OCIM_3 5 Ocimene GWAS 85 accessions DCARv2_Chr3_39077370 NA 3 39077370 0 0 0 6.655823354970433 10.1534/genetics.118.301299 NA NA t4039.T000141 QTL_r_OCIM_3 5 Ocimene GWAS 85 accessions DCARv2_Chr3_39077371 NA 3 39077371 0 0 0 6.655823354970433 10.1534/genetics.118.301299 NA NA t4039.T000142 QTL_r_OCIM_8 5 Ocimene GWAS 85 accessions DCARv2_Chr8_30233695 NA 8 30233695 0 0 0 6.060309609176638 10.1534/genetics.118.301299 NA NA t4039.T000143 QTL_r_OCIM_9 5 Ocimene GWAS 85 accessions DCARv2_Chr9_31325976 NA 9 31325976 0 0 0 5.960438761222364 10.1534/genetics.118.301299 NA NA t4039.T000144 QTL_r_SABI_4.1 5 Sabinene GWAS 85 accessions DCARv2_Chr4_31232041 NA 4 31232041 0 0 0 5.952475144437457 10.1534/genetics.118.301299 NA NA t4039.T000145 QTL_r_SABI_4.2 5 Sabinene GWAS 85 accessions DCARv2_Chr4_34821011 NA 4 34821011 0 0 0 6.088114239894769 10.1534/genetics.118.301299 NA NA t4039.T000146 QTL_r_SABI_7 5 Sabinene GWAS 85 accessions DCARv2_Chr7_28316072 NA 7 28316072 0 0 0 6.4129524296424725 10.1534/genetics.118.301299 NA NA t4039.T000147 QTL_r_TERPol_4 5 Terpinen-4-ol GWAS 85 accessions DCARv2_Chr4_31232041 NA 4 31232041 0 0 0 7.1414945636314 10.1534/genetics.118.301299 NA NA t4039.T000148 QTL_r_TERPol_7 5 Terpinen-4-ol GWAS 85 accessions DCARv2_Chr7_28316072 NA 7 28316072 0 0 0 6.38046549999938 10.1534/genetics.118.301299 NA NA t4039.T000149 QTL_l_aCUBE_4 5 a-cubebene GWAS 85 accessions DCARv2_Chr4_3072815 NA 4 3072815 0 0 0 5.964770043194019 10.1534/genetics.118.301299 NA NA t4039.T000150 QTL_l_aTERP_5 5 a-terpineol GWAS 85 accessions DCARv2_Chr5_304852 NA 5 304852 0 0 0 6.047970153891447 10.1534/genetics.118.301299 NA NA t4039.T000151 QTL_l_aTERP_7 5 a-terpineol GWAS 85 accessions DCARv2_Chr7_33748718 NA 7 33748718 0 0 0 6.650284900887282 10.1534/genetics.118.301299 NA NA t4039.T000152 QTL_l_aTHUJ_7 5 a-thujene GWAS 85 accessions DCARv2_Chr7_16169936 NA 7 16169936 0 0 0 6.1442744066692025 10.1534/genetics.118.301299 NA NA t4039.T000153 QTL_l_BORN_2 5 Borneol GWAS 85 accessions DCARv2_Chr2_157069 NA 2 157069 0 0 0 5.9433958302238645 10.1534/genetics.118.301299 NA NA t4039.T000154 QTL_l_BORNAc_2 5 Bornyl acetate GWAS 85 accessions DCARv2_Chr2_40042516 NA 2 40042516 0 0 0 6.0171083953449385 10.1534/genetics.118.301299 NA NA t4039.T000155 QTL_l_BORNAc_7 5 Bornyl acetate GWAS 85 accessions DCARv2_Chr7_399885 NA 7 399885 0 0 0 6.111389234954381 10.1534/genetics.118.301299 NA NA t4039.T000156 QTL_l_TERP_1 5 Terpinolene GWAS 85 accessions DCARv2_Chr1_6153146 NA 1 6153146 0 0 0 5.930593150221034 10.1534/genetics.118.301299 NA NA t4039.T000157 QTL_l_TERP_3 5 Terpinolene GWAS 85 accessions DCARv2_Chr3_11678474 NA 3 11678474 0 0 0 6.147947740810488 10.1534/genetics.118.301299 NA NA t4039.T000158 5 β-carotene GWAS B493 × QAL F4 S7_33825289 NA 7 33825289 0 0 0 127.8 25.4 7.25e-16 10.1534/g3.117.043067 NA NA t4039.T000159 Q1 4 Root thickening Interval mapping commutatus × line 2874B F2 2_42552923 NA 0 0 0 0 64 3.6 10.3389/fpls.2017.00012 NA NA t4039.T000160 Q2 4 Root thickening Interval mapping commutatus × line 2874B F2 3_30320926 NA 0 0 0 0 44 6.3 10.3389/fpls.2017.00012 NA NA t4039.T000161 Q3 4 Root thickening Interval mapping commutatus × line 2874B F2 4_25093202 NA 0 0 0 0 34 6.8 10.3389/fpls.2017.00012 NA NA t4039.T000162 Q4 4 Root thickening Interval mapping commutatus × line 2874B F2 5_21499391 NA 0 0 0 0 39.1 7.2 10.3389/fpls.2017.00012 NA NA t4039.T000163 Q5 4 Root thickening Interval mapping commutatus × line 2874B F2 8_25025402 NA 0 0 0 0 40 3.2 10.3389/fpls.2017.00012 NA NA t4039.T000164 c.5loc.45 4 Shoulder curvature Composite interval mapping L1408 × W133 F2:3 NA 5 10886001 0 0 0 45 10.1093/g3journal/jkae041 NA NA t4039.T000165 c.3loc.79 4 Tip curvature Composite interval mapping L1408 × W133 F2:3 NA 3 61018994 0 0 0 79 10.1093/g3journal/jkae041 NA NA t4039.T000166 c.8loc.2 4 Biomass Composite interval mapping L1408 × W133 F2:3 NA 8 21431131 0 0 0 2 10.1093/g3journal/jkae041 NA NA t4039.T000167 c.3loc.53 4 Width Composite interval mapping L1408 × W133 F2:3 NA 3 35021817 0 0 0 53 10.1093/g3journal/jkae041 NA NA t4039.T000168 c.6loc.50 4 Width Composite interval mapping L1408 × W133 F2:3 NA 6 39847186 0 0 0 50 10.1093/g3journal/jkae041 NA NA t4039.T000169 c.2loc.19 4 Length-to-width ratio Composite interval mapping L1408 × W133 F2:3 NA 2 39653470 0 0 0 19 10.1093/g3journal/jkae041 NA NA t4039.T000170 c.3loc.56 4 Length-to-width ratio Composite interval mapping L1408 × W133 F2:3 NA 3 41614217 0 0 0 56 10.1093/g3journal/jkae041 NA NA t4039.T000171 c.6loc.50 4 Length-to-width ratio Composite interval mapping L1408 × W133 F2:3 NA 6 39875002 0 0 0 50 10.1093/g3journal/jkae041 NA NA t4039.T000172 c.8loc.8 4 Length-to-width ratio Composite interval mapping L1408 × W133 F2:3 NA 8 19453332 0 0 0 0 10.1093/g3journal/jkae041 NA NA t4039.T000173 c.6loc.6 4 Length Composite interval mapping L1408 × W133 F2:3 NA 6 24151730 0 0 0 18 10.1093/g3journal/jkae041 NA NA t4039.T000174 c.8loc.0 4 Length Composite interval mapping L1408 × W133 F2:3 NA 8 20539941 0 0 0 0 10.1093/g3journal/jkae041 NA NA t4039.T000175 c.2loc.18 4 Shoulder curvature Composite interval mapping L1408 × W279 F2:3 NA 2 44243993 0 0 0 18 10.1093/g3journal/jkae041 NA NA t4039.T000176 c.6loc.45 4 Width Composite interval mapping L1408 × W279 F2:3 NA 6 40259670 0 0 0 45 10.1093/g3journal/jkae041 NA NA t4039.T000177 c.2loc.34 4 Length-to-width ratio Composite interval mapping L1408 × W279 F2:3 NA 2 53149932 0 0 0 34 10.1093/g3journal/jkae041 NA NA t4039.T000178 c.2loc.37 4 Length Composite interval mapping L1408 × W279 F2:3 NA 2 57786982 0 0 0 37 10.1093/g3journal/jkae041 NA NA t4039.T000179 5 α-pinene Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 20.4 10.3390/metabo13010071 NA NA t4039.T000180 5 α-pinene Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 58.7 10.3390/metabo13010071 NA NA t4039.T000181 5 Camphene Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 20.4 10.3390/metabo13010071 NA NA t4039.T000182 5 Camphene Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 58.7 10.3390/metabo13010071 NA NA t4039.T000183 5 α-bisabolene Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 50.8 10.3390/metabo13010071 NA NA t4039.T000184 5 α-bisabolene Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 40.2 10.3390/metabo13010071 NA NA t4039.T000185 5 α-humulene Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 16.4 10.3390/metabo13010071 NA NA t4039.T000186 5 β-cubebene Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 39.6 10.3390/metabo13010071 NA NA t4039.T000187 5 β-cubebene Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 16.4 10.3390/metabo13010071 NA NA t4039.T000188 5 β-cubebene Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 28.9 10.3390/metabo13010071 NA NA t4039.T000189 5 Caryophyllene Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 58.7 10.3390/metabo13010071 NA NA t4039.T000190 5 Caryophyllene Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 11.3 10.3390/metabo13010071 NA NA t4039.T000191 5 Germacrene Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 39.6 10.3390/metabo13010071 NA NA t4039.T000192 5 Germacrene Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 16.4 10.3390/metabo13010071 NA NA t4039.T000193 5 Germacrene Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 21.4 10.3390/metabo13010071 NA NA t4039.T000194 1 Resistance loci 11 Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 39.6 10.3390/metabo13010071 NA NA t4039.T000195 1 Resistance loci 11 Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 13.7 10.3390/metabo13010071 NA NA t4039.T000196 1 Resistance loci 11 Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 5 10.3390/metabo13010071 NA NA t4039.T000197 1 Resistance loci 11 Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 47.7 10.3390/metabo13010071 NA NA t4039.T000198 1 Resistance loci 11 Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 32.1 10.3390/metabo13010071 NA NA t4039.T000199 1 Resistance loci 14 Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 54.4 10.3390/metabo13010071 NA NA t4039.T000200 1 Resistance loci 14 Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 13.7 10.3390/metabo13010071 NA NA t4039.T000201 1 Resistance loci 14 Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 10 10.3390/metabo13010071 NA NA t4039.T000202 1 Resistance loci 14 Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 43.8 10.3390/metabo13010071 NA NA t4039.T000203 1 Resistance loci 14 Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 8.3 10.3390/metabo13010071 NA NA t4039.T000204 1 Resistance loci 14 Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 68.3 10.3390/metabo13010071 NA NA t4039.T000205 1 Resistance loci 14 Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 27.7 10.3390/metabo13010071 NA NA t4039.T000206 1 Resistance loci 14 Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 31.4 10.3390/metabo13010071 NA NA t4039.T000207 1 Resistance loci 16 Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 39.6 10.3390/metabo13010071 NA NA t4039.T000208 1 Resistance loci 16 Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 18.1 10.3390/metabo13010071 NA NA t4039.T000209 1 Resistance loci 16 Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 43.8 10.3390/metabo13010071 NA NA t4039.T000210 1 Resistance loci 16 Regression interval mapping H1 × K3 F2:3 NA 0 0 0 0 47.2 10.3390/metabo13010071 NA NA