t4081.T000001 5 firmness, FIR GWAS 127 S. l. cerasiforme accessions accessions TD018-103 NA NA 0 0 NA 0 0 75.3 10.1007/s00122-012-2002-8 NA NA t4081.T000002 4 soluble solid content, soluble solid content (SSC) GWAS 127 S. l. cerasiforme accessions accessions TD200-317 NA NA 0 0 NA 0 0 6.6 10.1007/s00122-012-2002-8 NA NA t4081.T000003 4 Fruit color, color on red to green scales (a) GWAS 127 S. l. cerasiforme accessions accessions CON310-990 NA NA 0 0 NA 0 0 71.9 10.1007/s00122-012-2002-8 NA NA t4081.T000004 4 Fruit color, color on red to green scales (a) GWAS 127 S. l. cerasiforme accessions accessions Z1723-91 NA NA 0 0 NA 0 0 46.9 10.1007/s00122-012-2002-8 NA NA t4081.T000005 5 sugar content, sugar content (SUG) GWAS 127 S. l. cerasiforme accessions accessions TD247-57 NA NA 0 0 NA 0 0 6.4 10.1007/s00122-012-2002-8 NA NA t4081.T000006 5 firmness, FIR GWAS 188 accessions accessions CON203-643 NA NA 0 0 NA 0 0 44.7 10.1007/s00122-012-2002-8 NA NA t4081.T000007 4 Fruit color, color on red to green scales (a) GWAS 188 accessions accessions TD083-685 NA NA 0 0 NA 0 0 133.1 10.1007/s00122-012-2002-8 NA NA t4081.T000008 5 firmness, FIR GWAS 188 accessions accessions CON174-206 NA NA 0 0 NA 0 0 102.3 10.1007/s00122-012-2002-8 NA NA t4081.T000009 4 Fruit color, color (lightness) (L) GWAS 188 accessions accessions TD200-317 NA NA 0 0 NA 0 0 6.6 10.1007/s00122-012-2002-8 NA NA t4081.T000010 5 firmness, FIR GWAS 188 accessions accessions CON173-501 NA NA 0 0 NA 0 0 68.3 10.1007/s00122-012-2002-8 NA NA t4081.T000011 5 firmness on red to green scales, firmness on red to green scales (FIR) GWAS 188 accessions accessions TD025-87 NA NA 0 0 NA 0 0 20.8 10.1007/s00122-012-2002-8 NA NA t4081.T000012 4 Fruit color, color (lightness) (L) GWAS 188 accessions accessions Z1475-87 NA NA 0 0 NA 0 0 51 10.1007/s00122-012-2002-8 NA NA t4081.T000013 5 firmness, FIR GWAS 188 accessions accessions CON176-455 NA NA 0 0 NA 0 0 59 10.1007/s00122-012-2002-8 NA NA t4081.T000014 5 firmness, FIR GWAS 188 accessions accessions TD247-57 NA NA 0 0 NA 0 0 6.4 10.1007/s00122-012-2002-8 NA NA t4081.T000015 5 firmness, FIR GWAS 188 accessions accessions TD156-314 NA NA 0 0 NA 0 0 93.7 10.1007/s00122-012-2002-8 NA NA t4081.T000016 frwp11.1 1 Salt tolerance conferred by rootstocks, salt tolerance (proportions of the fresh root weight (FRWp) ) QTL analysis C population (S. lycopersicum var. cerasiforme x S. cheesmaniae (L. Riley) Fosberg) F8 TG30_320 NA NA 0 0 NA 0 0 18.4 1.73 10.1007/s00122-010-1294-9 NA NA t4081.T000017 gABA1.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Sap ABA concentration) QTL analysis C population (S. lycopersicum var. cerasiforme x S. cheesmaniae (L. Riley) Fosberg) F9 TG48_510 NA NA 0 0 NA 0 0 32.6 1.73 10.1007/s00122-010-1294-9 NA NA t4081.T000018 dlw1.1 1 Drying and weighting leaves under salinity conditions, drying and weighting leaves (g) QTL analysis C RIL,F8 TG48_510 NA NA 0 0 NA 0 0 32.01 10.47 10.1007/s00122-008-0720-8 NA NA t4081.T000018 dlw1.1 4 Drying and weighting leaves under salinity conditions, drying and weighting leaves (g) QTL analysis C RIL,F8 TG48_510 NA NA 0 0 NA 0 0 32.01 10.47 10.1007/s00122-008-0720-8 NA NA t4081.T000019 dlw6.1 1 Drying and weighting leaves under salinity conditions, drying and weighting leaves (g) QTL analysis C RIL,F8 SSR22_200 NA NA 0 0 NA 0 0 5.01 8.86 10.1007/s00122-008-0720-8 NA NA t4081.T000019 dlw6.1 4 Drying and weighting leaves under salinity conditions, drying and weighting leaves (g) QTL analysis C RIL,F8 SSR22_200 NA NA 0 0 NA 0 0 5.01 8.86 10.1007/s00122-008-0720-8 NA NA t4081.T000020 dlw7.1 1 Drying and weighting leaves under salinity conditions, drying and weighting leaves (g) QTL analysis C RIL,F8 SSR24_510 NA NA 0 0 NA 0 0 58.01 12.19 10.1007/s00122-008-0720-8 NA NA t4081.T000020 dlw7.1 4 Drying and weighting leaves under salinity conditions, drying and weighting leaves (g) QTL analysis C RIL,F8 SSR24_510 NA NA 0 0 NA 0 0 58.01 12.19 10.1007/s00122-008-0720-8 NA NA t4081.T000021 dsw1.1 1 Drying and weighting stems under salinity conditions, drying and weighting stems (g) QTL analysis C RIL,F8 TG48_510 NA NA 0 0 NA 0 0 32.01 10.15 10.1007/s00122-008-0720-8 NA NA t4081.T000021 dsw1.1 4 Drying and weighting stems under salinity conditions, drying and weighting stems (g) QTL analysis C RIL,F8 TG48_510 NA NA 0 0 NA 0 0 32.01 10.15 10.1007/s00122-008-0720-8 NA NA t4081.T000022 gfn11.1 1 Rootstock effect on the fruit yield under salinity conditions, gFN (fruit number) QTL analysis C RIL,F9 TG16_800 NA NA 0 0 NA 0 0 49.5 1.88 10.1007/s00122-008-0900-6 NA NA t4081.T000022 gfn11.1 3 Rootstock effect on the fruit yield under salinity conditions, gFN (fruit number) QTL analysis C RIL,F9 TG16_800 NA NA 0 0 NA 0 0 49.5 1.88 10.1007/s00122-008-0900-6 NA NA t4081.T000023 gfn11.2 1 Rootstock effect on the fruit yield under salinity conditions, gFN (fruit number) QTL analysis C RIL,F9 SSRW104_560 NA NA 0 0 NA 0 0 32.1 2.04 10.1007/s00122-008-0900-6 NA NA t4081.T000023 gfn11.2 3 Rootstock effect on the fruit yield under salinity conditions, gFN (fruit number) QTL analysis C RIL,F9 SSRW104_560 NA NA 0 0 NA 0 0 32.1 2.04 10.1007/s00122-008-0900-6 NA NA t4081.T000024 gtw11.1 1 Rootstock effect on the fruit yield under salinity conditions, gTW (total fruit weight) QTL analysis C RIL,F9 TG16_800 NA NA 0 0 NA 0 0 49.5 2.05 10.1007/s00122-008-0900-6 NA NA t4081.T000024 gtw11.1 3 Rootstock effect on the fruit yield under salinity conditions, gTW (total fruit weight) QTL analysis C RIL,F9 TG16_800 NA NA 0 0 NA 0 0 49.5 2.05 10.1007/s00122-008-0900-6 NA NA t4081.T000025 gtw11.2 1 Rootstock effect on the fruit yield under salinity conditions, gTW (total fruit weight) QTL analysis C RIL,F9 TG30_320 NA NA 0 0 SSRW104_560 NA 0 0 28.4 2.09 10.1007/s00122-008-0900-6 NA NA t4081.T000025 gtw11.2 3 Rootstock effect on the fruit yield under salinity conditions, gTW (total fruit weight) QTL analysis C RIL,F9 TG30_320 NA NA 0 0 SSRW104_560 NA 0 0 28.4 2.09 10.1007/s00122-008-0900-6 NA NA t4081.T000026 gtw3.2 1 Rootstock effect on the fruit yield under salinity conditions, gTW (total fruit weight) QTL analysis C RIL,F9 SSR24_250 NA NA 0 0 NA 0 0 16.3 2.01 10.1007/s00122-008-0900-6 NA NA t4081.T000026 gtw3.2 3 Rootstock effect on the fruit yield under salinity conditions, gTW (total fruit weight) QTL analysis C RIL,F9 SSR24_250 NA NA 0 0 NA 0 0 16.3 2.01 10.1007/s00122-008-0900-6 NA NA t4081.T000027 la1.1 1 Total leaf area under salinity conditions, total leaf area (dm2) QTL analysis C RIL,F8 TG48_510 NA NA 0 0 NA 0 0 32.01 10.36 10.1007/s00122-008-0720-8 NA NA t4081.T000027 la1.1 4 Total leaf area under salinity conditions, total leaf area (dm2) QTL analysis C RIL,F8 TG48_510 NA NA 0 0 NA 0 0 32.01 10.36 10.1007/s00122-008-0720-8 NA NA t4081.T000028 la11.1 1 Total leaf area under salinity conditions, total leaf area (dm2) QTL analysis C RIL,F8 SSRW136_148 NA NA 0 0 NA 0 0 6.01 9.4 10.1007/s00122-008-0720-8 NA NA t4081.T000028 la11.1 4 Total leaf area under salinity conditions, total leaf area (dm2) QTL analysis C RIL,F8 SSRW136_148 NA NA 0 0 NA 0 0 6.01 9.4 10.1007/s00122-008-0720-8 NA NA t4081.T000029 la12.1 1 Total leaf area under salinity conditions, total leaf area (dm2) QTL analysis C RIL,F8 TG16_530 NA NA 0 0 NA 0 0 21.01 9.97 10.1007/s00122-008-0720-8 NA NA t4081.T000029 la12.1 4 Total leaf area under salinity conditions, total leaf area (dm2) QTL analysis C RIL,F8 TG16_530 NA NA 0 0 NA 0 0 21.01 9.97 10.1007/s00122-008-0720-8 NA NA t4081.T000030 la5.1 1 Total leaf area under control conditions, total leaf area (dm2) QTL analysis C RIL,F8 TG69_620 NA NA 0 0 NA 0 0 11.01 7.84 10.1007/s00122-008-0720-8 NA NA t4081.T000030 la5.1 4 Total leaf area under control conditions, total leaf area (dm2) QTL analysis C RIL,F8 TG69_620 NA NA 0 0 NA 0 0 11.01 7.84 10.1007/s00122-008-0720-8 NA NA t4081.T000031 lkc12.1 1 K+ concentrations in leaves under salinity conditions, the K+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 SSR22_1018 NA NA 0 0 NA 0 0 1.01 8.4 10.1007/s00122-008-0720-8 NA NA t4081.T000031 lkc12.1 4 K+ concentrations in leaves under salinity conditions, the K+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 SSR22_1018 NA NA 0 0 NA 0 0 1.01 8.4 10.1007/s00122-008-0720-8 NA NA t4081.T000031 lkc12.1 5 K+ concentrations in leaves under salinity conditions, the K+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 SSR22_1018 NA NA 0 0 NA 0 0 1.01 8.4 10.1007/s00122-008-0720-8 NA NA t4081.T000032 lkc5.1 1 K+ concentrations in leaves under control conditions, the K+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 PHYB2 NA NA 0 0 NA 0 0 31.01 20.05 10.1007/s00122-008-0720-8 NA NA t4081.T000032 lkc5.1 4 K+ concentrations in leaves under control conditions, the K+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 PHYB2 NA NA 0 0 NA 0 0 31.01 20.05 10.1007/s00122-008-0720-8 NA NA t4081.T000032 lkc5.1 5 K+ concentrations in leaves under control conditions, the K+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 PHYB2 NA NA 0 0 NA 0 0 31.01 20.05 10.1007/s00122-008-0720-8 NA NA t4081.T000033 lkc7.1 1 K+ concentrations in leaves under salinity conditions, the K+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 SSR22_530 NA NA 0 0 NA 0 0 27.01 28.15 10.1007/s00122-008-0720-8 NA NA t4081.T000033 lkc7.1 4 K+ concentrations in leaves under salinity conditions, the K+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 SSR22_530 NA NA 0 0 NA 0 0 27.01 28.15 10.1007/s00122-008-0720-8 NA NA t4081.T000033 lkc7.1 5 K+ concentrations in leaves under salinity conditions, the K+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 SSR22_530 NA NA 0 0 NA 0 0 27.01 28.15 10.1007/s00122-008-0720-8 NA NA t4081.T000034 lkn1.1 1 Ratio of K+/Na+ in leaves under salinity conditions QTL analysis C RIL,F8 LeNHX3 NA NA 0 0 NA 0 0 30.01 9.08 10.1007/s00122-008-0720-8 NA NA t4081.T000034 lkn1.1 4 Ratio of K+/Na+ in leaves under salinity conditions QTL analysis C RIL,F8 LeNHX3 NA NA 0 0 NA 0 0 30.01 9.08 10.1007/s00122-008-0720-8 NA NA t4081.T000034 lkn1.1 5 Ratio of K+/Na+ in leaves under salinity conditions QTL analysis C RIL,F8 LeNHX3 NA NA 0 0 NA 0 0 30.01 9.08 10.1007/s00122-008-0720-8 NA NA t4081.T000035 lkn7.1 1 Ratio of K+/Na+ in leaves under salinity conditions QTL analysis C RIL,F8 SSRW356_900 NA NA 0 0 NA 0 0 26.01 36.24 10.1007/s00122-008-0720-8 NA NA t4081.T000035 lkn7.1 4 Ratio of K+/Na+ in leaves under salinity conditions QTL analysis C RIL,F8 SSRW356_900 NA NA 0 0 NA 0 0 26.01 36.24 10.1007/s00122-008-0720-8 NA NA t4081.T000035 lkn7.1 5 Ratio of K+/Na+ in leaves under salinity conditions QTL analysis C RIL,F8 SSRW356_900 NA NA 0 0 NA 0 0 26.01 36.24 10.1007/s00122-008-0720-8 NA NA t4081.T000036 lnc1.1 1 Na+ concentrations in leaves under salinity conditions, the Na+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 SSR30_375 NA NA 0 0 NA 0 0 29.01 11.62 10.1007/s00122-008-0720-8 NA NA t4081.T000036 lnc1.1 4 Na+ concentrations in leaves under salinity conditions, the Na+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 SSR30_375 NA NA 0 0 NA 0 0 29.01 11.62 10.1007/s00122-008-0720-8 NA NA t4081.T000036 lnc1.1 5 Na+ concentrations in leaves under salinity conditions, the Na+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 SSR30_375 NA NA 0 0 NA 0 0 29.01 11.62 10.1007/s00122-008-0720-8 NA NA t4081.T000037 lnc7.1 1 Na+ concentrations in leaves under salinity conditions, the Na+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 TG35_506 NA NA 0 0 NA 0 0 30.01 51.03 10.1007/s00122-008-0720-8 NA NA t4081.T000037 lnc7.1 4 Na+ concentrations in leaves under salinity conditions, the Na+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 TG35_506 NA NA 0 0 NA 0 0 30.01 51.03 10.1007/s00122-008-0720-8 NA NA t4081.T000037 lnc7.1 5 Na+ concentrations in leaves under salinity conditions, the Na+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 TG35_506 NA NA 0 0 NA 0 0 30.01 51.03 10.1007/s00122-008-0720-8 NA NA t4081.T000038 lnc8.1 1 Na+ concentrations in leaves under salinity conditions, the Na+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 SSRW63_240 NA NA 0 0 NA 0 0 23.01 12.04 10.1007/s00122-008-0720-8 NA NA t4081.T000038 lnc8.1 4 Na+ concentrations in leaves under salinity conditions, the Na+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 SSRW63_240 NA NA 0 0 NA 0 0 23.01 12.04 10.1007/s00122-008-0720-8 NA NA t4081.T000038 lnc8.1 5 Na+ concentrations in leaves under salinity conditions, the Na+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis C RIL,F8 SSRW63_240 NA NA 0 0 NA 0 0 23.01 12.04 10.1007/s00122-008-0720-8 NA NA t4081.T000039 nls7.1 1 Sodium leaf sensitivity under salinity conditions QTL analysis C RIL,F8 TG35_506 NA NA 0 0 NA 0 0 32.01 14.44 10.1007/s00122-008-0720-8 NA NA t4081.T000039 nls7.1 4 Sodium leaf sensitivity under salinity conditions QTL analysis C RIL,F8 TG35_506 NA NA 0 0 NA 0 0 32.01 14.44 10.1007/s00122-008-0720-8 NA NA t4081.T000039 nls7.1 5 Sodium leaf sensitivity under salinity conditions QTL analysis C RIL,F8 TG35_506 NA NA 0 0 NA 0 0 32.01 14.44 10.1007/s00122-008-0720-8 NA NA t4081.T000040 skc5.1 1 K+ concentrations in stems under control conditions, the K+ concentrations (mmole per Kg of dry weight) in stems QTL analysis C RIL,F8 SSR35_298 NA NA 0 0 NA 0 0 0.01 11.89 10.1007/s00122-008-0720-8 NA NA t4081.T000040 skc5.1 4 K+ concentrations in stems under control conditions, the K+ concentrations (mmole per Kg of dry weight) in stems QTL analysis C RIL,F8 SSR35_298 NA NA 0 0 NA 0 0 0.01 11.89 10.1007/s00122-008-0720-8 NA NA t4081.T000040 skc5.1 5 K+ concentrations in stems under control conditions, the K+ concentrations (mmole per Kg of dry weight) in stems QTL analysis C RIL,F8 SSR35_298 NA NA 0 0 NA 0 0 0.01 11.89 10.1007/s00122-008-0720-8 NA NA t4081.T000041 skc5.2 1 K+ concentrations in stems under control conditions, the K+ concentrations (mmole per Kg of dry weight) in stems QTL analysis C RIL,F8 PHYB2 NA NA 0 0 NA 0 0 31.01 14.07 10.1007/s00122-008-0720-8 NA NA t4081.T000041 skc5.2 4 K+ concentrations in stems under control conditions, the K+ concentrations (mmole per Kg of dry weight) in stems QTL analysis C RIL,F8 PHYB2 NA NA 0 0 NA 0 0 31.01 14.07 10.1007/s00122-008-0720-8 NA NA t4081.T000041 skc5.2 5 K+ concentrations in stems under control conditions, the K+ concentrations (mmole per Kg of dry weight) in stems QTL analysis C RIL,F8 PHYB2 NA NA 0 0 NA 0 0 31.01 14.07 10.1007/s00122-008-0720-8 NA NA t4081.T000042 skc7.1 1 K+ concentrations in stems under salinity conditions, the K+ concentrations (mmole per Kg of dry weight) in stems QTL analysis C RIL,F8 SSR22_530 NA NA 0 0 NA 0 0 27.01 27.32 10.1007/s00122-008-0720-8 NA NA t4081.T000042 skc7.1 4 K+ concentrations in stems under salinity conditions, the K+ concentrations (mmole per Kg of dry weight) in stems QTL analysis C RIL,F8 SSR22_530 NA NA 0 0 NA 0 0 27.01 27.32 10.1007/s00122-008-0720-8 NA NA t4081.T000042 skc7.1 5 K+ concentrations in stems under salinity conditions, the K+ concentrations (mmole per Kg of dry weight) in stems QTL analysis C RIL,F8 SSR22_530 NA NA 0 0 NA 0 0 27.01 27.32 10.1007/s00122-008-0720-8 NA NA t4081.T000043 snc7.1 1 Na+ concentrations in stems under salinity conditions, the Na+ concentrations (mmole per Kg of dry weight) in stems QTL analysis C RIL,F8 TG35_506 NA NA 0 0 NA 0 0 30.01 51.03 10.1007/s00122-008-0720-8 NA NA t4081.T000043 snc7.1 4 Na+ concentrations in stems under salinity conditions, the Na+ concentrations (mmole per Kg of dry weight) in stems QTL analysis C RIL,F8 TG35_506 NA NA 0 0 NA 0 0 30.01 51.03 10.1007/s00122-008-0720-8 NA NA t4081.T000043 snc7.1 5 Na+ concentrations in stems under salinity conditions, the Na+ concentrations (mmole per Kg of dry weight) in stems QTL analysis C RIL,F8 TG35_506 NA NA 0 0 NA 0 0 30.01 51.03 10.1007/s00122-008-0720-8 NA NA t4081.T000044 tn7.1 1 Na+ content in the aerial part of plant under salinity conditions QTL analysis C RIL,F8 TG35_506 NA NA 0 0 NA 0 0 28.01 30.38 10.1007/s00122-008-0720-8 NA NA t4081.T000044 tn7.1 4 Na+ content in the aerial part of plant under salinity conditions QTL analysis C RIL,F8 TG35_506 NA NA 0 0 NA 0 0 28.01 30.38 10.1007/s00122-008-0720-8 NA NA t4081.T000044 tn7.1 5 Na+ content in the aerial part of plant under salinity conditions QTL analysis C RIL,F8 TG35_506 NA NA 0 0 NA 0 0 28.01 30.38 10.1007/s00122-008-0720-8 NA NA t4081.T000045 5 Titratable acidity QTL analysis CL-RIL (Solanum lycopersicum var. cerasiforme Cervil x Solanum lycopersicum Levovil) RIL TG77 NA NA 0 0 NA 0 0 100 4.89 10.1007/s00122-007-0578-1 NA NA t4081.T000046 4 Locule number QTL analysis CL-RIL (Solanum lycopersicum var. cerasiforme Cervil x Solanum lycopersicum Levovil) RIL TG484 NA NA 0 0 NA 0 0 71 15.4 10.1007/s00122-007-0578-1 NA NA t4081.T000047 3 Fruit weight QTL analysis CL-RIL (Solanum lycopersicum var. cerasiforme Cervil x Solanum lycopersicum Levovil) RIL CT85 NA NA 0 0 NA 0 0 83 5.39 10.1007/s00122-007-0578-1 NA NA t4081.T000048 5 Fruit firmness QTL analysis CL-RIL (Solanum lycopersicum var. cerasiforme Cervil x Solanum lycopersicum Levovil) RIL TG287 NA NA 0 0 NA 0 0 48 9.78 10.1007/s00122-007-0578-1 NA NA t4081.T000049 5 Titratable acidity QTL analysis CL-RIL (Solanum lycopersicum var. cerasiforme Cervil x Solanum lycopersicum Levovil) RIL CT32 NA NA 0 0 NA 0 0 39 3.76 10.1007/s00122-007-0578-1 NA NA t4081.T000050 5 Sugar content QTL analysis CL-RIL (Solanum lycopersicum var. cerasiforme Cervil x Solanum lycopersicum Levovil) RIL TG1 (CIM only) NA NA 0 0 NA 0 0 62 2.94 10.1007/s00122-007-0578-1 NA NA t4081.T000051 3 Fruit weight QTL analysis CL-RIL (Solanum lycopersicum var. cerasiforme Cervil x Solanum lycopersicum Levovil) RIL CT65 NA NA 0 0 NA 0 0 84 4.45 10.1007/s00122-007-0578-1 NA NA t4081.T000052 3 Fruit weight QTL analysis CL-RIL (Solanum lycopersicum var. cerasiforme Cervil x Solanum lycopersicum Levovil) RIL CT65 NA NA 0 0 NA 0 0 30 3.69 10.1007/s00122-007-0578-1 NA NA t4081.T000053 1 Late blight resistance QTL analysis CLN657 x L3708 F2 TG591A NA NA 0 0 NA 0 0 18.41 NA NA NA t4081.T000054 1 Bacterial Spot Resistance, Bacterial Spot Resistance to Xanthomonas euvesicatoria race T1 GWAS complex breeding population (two fresh-market tomatoes: FL8233 and Ohio MR13; four processing tomatoes: OH7536, OH8614, OH03-643 NULL solcap_snp_sl_13762 NA NA 0 0 NA 0 0 2.77 10.1094/PHYTO-02-15-0051-R NA NA t4081.T000055 1 Bacterial Spot Resistance, Bacterial Spot Resistance to Xanthomonas euvesicatoria race T3 GWAS complex breeding population (two fresh-market tomatoes: FL8233 and Ohio MR13; four processing tomatoes: OH7536, OH8614, OH03-643 NULL solcap_snp_sl_13842 NA NA 0 0 NA 0 0 2.041 10.1094/PHYTO-02-15-0051-R NA NA t4081.T000056 1 Bacterial Spot Resistance, Bacterial Spot Resistance to Xanthomonas euvesicatoria race T3 GWAS complex breeding population (two fresh-market tomatoes: FL8233 and Ohio MR13; four processing tomatoes: OH7536, OH8614, OH03-643 NULL solcap_snp_sl_47540 NA NA 0 0 NA 0 0 2.076 10.1094/PHYTO-02-15-0051-R NA NA t4081.T000057 1 Bacterial Spot Resistance, Bacterial Spot Resistance to Xanthomonas euvesicatoria race T1 GWAS complex breeding population (two fresh-market tomatoes: FL8233 and Ohio MR13; four processing tomatoes: OH7536, OH8614, OH03-643 NULL solcap_snp_sl_222 NA NA 0 0 NA 0 0 2.143 10.1094/PHYTO-02-15-0051-R NA NA t4081.T000058 1 Bacterial Spot Resistance, Bacterial Spot Resistance to Xanthomonas euvesicatoria race T3 GWAS complex breeding population (two fresh-market tomatoes: FL8233 and Ohio MR13; four processing tomatoes: OH7536, OH8614, OH03-643 NULL solcap_snp_sl_2629 NA NA 0 0 NA 0 0 2.013 10.1094/PHYTO-02-15-0051-R NA NA t4081.T000059 1 Bacterial Spot Resistance, Bacterial Spot Resistance to Xanthomonas euvesicatoria race T1 GWAS complex breeding population (two fresh-market tomatoes: FL8233 and Ohio MR13; four processing tomatoes: OH7536, OH8614, OH03-643 NULL solcap_snp_sl_9790 NA NA 0 0 NA 0 0 3.398 10.1094/PHYTO-02-15-0051-R NA NA t4081.T000060 1 Bacterial Spot Resistance, Bacterial Spot Resistance to Xanthomonas euvesicatoria race T3 GWAS complex breeding population (two fresh-market tomatoes: FL8233 and Ohio MR13; four processing tomatoes: OH7536, OH8614, OH03-643 NULL SL10915 NA NA 0 0 NA 0 0 2.745 10.1094/PHYTO-02-15-0051-R NA NA t4081.T000061 Rg-3 4 In vitro plant regeneraion, bud percentage concerning shoot regeneration, a putative allele of Rg-2 gene QTL analysis cv. Anl27 x (cv. Anl27 x S. pennellii PE-47) BC1 ME20-199 NA NA 0 0 NA 0 0 50.47 4.64 10.1186/1471-2229-11-140 NA NA t4081.T000062 SpRg-1 4 In vitro plant regeneraion, bud percentage concerning shoot regeneration QTL analysis cv. Anl27 x (cv. Anl27 x S. pennellii PE-47) BC1 C2_At1g65520 NA NA 0 0 C2_At2g45910 NA 0 0 22.47 7.12 10.1186/1471-2229-11-140 NA NA t4081.T000063 SpRg-4a 4 In vitro plant regeneraion, Regeneration percentage concerning shoot regeneration QTL analysis cv. Anl27 x (cv. Anl27 x S. pennellii PE-47) BC1 TAHINA-4-71, 3 NA NA 0 0 NA 0 0 50.24 4.94 10.1186/1471-2229-11-140 NA NA t4081.T000064 SpRg-4b 4 In vitro plant regeneraion, Productivity Rate concerning shoot regeneration QTL analysis cv. Anl27 x (cv. Anl27 x S. pennellii PE-47) BC1 SSR214 NA NA 0 0 SSR146 NA 0 0 86.33 3.08 10.1186/1471-2229-11-140 NA NA t4081.T000065 SpRg-7 4 In vitro plant regeneraion, Regeneration percentage concerning shoot regeneration QTL analysis cv. Anl27 x (cv. Anl27 x S. pennellii PE-47) BC1 TAHINA-7-43 SL3.0 SL3.0ch07 60995830 60996076 NA 0 0 13.44 5.47 10.1186/1471-2229-11-140 t4081.M024688.1 NA t4081.T000066 SpRg-8 4 In vitro plant regeneraion, Regeneration percentage concerning shoot regeneration QTL analysis cv. Anl27 x (cv. Anl27 x S. pennellii PE-47) BC1 C2_At1g64150 NA NA 0 0 C2_At4g23840 NA 0 0 53.37 4.25 10.1186/1471-2229-11-140 NA NA t4081.T000067 SpRg-7 4 In vitro plant regeneraion, bud percentage concerning shoot regeneration QTL analysis cv. Anl27 x S. pennellii PE-47 F2 ME10-141 NA NA 0 0 C2_At4g26680 NA 0 0 19.51 6.84 10.1186/1471-2229-11-140 NA NA t4081.T000068 4 Fresh Shoot weight under nutrientless condition, FrShwn (Fresh Shoot weight under nutrientless condition) QTL analysis cv. Moneymaker x CGN 155288 (S. pimpinellifolium) RIL 69430752 NA NA 0 0 NA 0 0 57.9 6.4 10.1371/journal.pone.0043991 NA NA t4081.T000069 4 Dry seed length, SL (Dry seed length) QTL analysis cv. Moneymaker x CGN 155288 (S. pimpinellifolium) RIL 39990428 NA NA 0 0 NA 0 0 0 3.2 10.1371/journal.pone.0043991 NA NA t4081.T000070 6 Dry Seed circularity, SC (Dry Seed circularity) QTL analysis cv. Moneymaker x CGN 155288 (S. pimpinellifolium) RIL 58802824 NA NA 0 0 NA 0 0 85.7 3 10.1371/journal.pone.0043991 NA NA t4081.T000071 6 Dry Seed weight, SW (Dry Seed weight) QTL analysis cv. Moneymaker x CGN 155288 (S. pimpinellifolium) RIL 51677496 NA NA 0 0 NA 0 0 50.4 4.6 10.1371/journal.pone.0043991 NA NA t4081.T000072 4 Seedling trait_lateral root number, LRn (Lateral root number per main root) QTL analysis cv. Moneymaker x CGN 155288 (S. pimpinellifolium) RIL 6814273 NA NA 0 0 NA 0 0 53.4 2.9 10.1371/journal.pone.0043991 NA NA t4081.T000073 4 Hypocotyl length, HypL (Hypocotyl length) QTL analysis cv. Moneymaker x CGN 155288 (S. pimpinellifolium) RIL 41812268 NA NA 0 0 NA 0 0 87.3 4.2 10.1371/journal.pone.0043991 NA NA t4081.T000074 4 Seedling trait_lateral roots density, LRD/Bz (Lateral roots density per branched zone) QTL analysis cv. Moneymaker x CGN 155288 (S. pimpinellifolium) RIL 3317484 NA NA 0 0 NA 0 0 29.2 3.8 10.1371/journal.pone.0043991 NA NA t4081.T000075 4 Dry Seed circularity, SC (Dry Seed circularity) QTL analysis cv. Moneymaker x CGN 155288 (S. pimpinellifolium) RIL 57594496 NA NA 0 0 NA 0 0 79.3 2.6 10.1371/journal.pone.0043991 NA NA t4081.T000076 4 Seedling trait_main root length, MRL (Main Root Length) QTL analysis cv. Moneymaker x CGN 155288 (S. pimpinellifolium) RIL 65815200 NA NA 0 0 NA 0 0 76.4 5.7 10.1371/journal.pone.0043991 NA NA t4081.T000077 4 Hypocotyl length, HypL (Hypocotyl length) QTL analysis cv. Moneymaker x CGN 155288 (S. pimpinellifolium) RIL 59476312 NA NA 0 0 NA 0 0 1.6 2.4 10.1371/journal.pone.0043991 NA NA t4081.T000078 4 Dry seed length, SL (Dry seed length) QTL analysis cv. Moneymaker x CGN 155288 (S. pimpinellifolium) RIL 48283252 NA NA 0 0 NA 0 0 22.1 4.6 10.1371/journal.pone.0043991 NA NA t4081.T000079 4 Fresh Root weight, FrRt (Fresh Root weight) QTL analysis cv. Moneymaker x CGN 155288 (S. pimpinellifolium) RIL 62040100 NA NA 0 0 NA 0 0 0 2 10.1371/journal.pone.0043991 NA NA t4081.T000080 RXopJ4 resistance locus 1 resistance to bacterial spot disease, resistance to bacterial spot disease (Xanthomonas perforans (Xp)) QTL analysis FL8000 x RXopJ4 8000 OC7 F2 J350 SL3.0 SL3.0ch06 38763158 38763459 J352 SL3.0ch06 38967965 38968379 10.1007/s00122-012-2004-6 t4081.M021376.1 t4081.M021379.1 t4081.T000081 sov1 4 Fruit width, width at the widest position QTL analysis GBL x YP (09S96) F2 11EP16 SL3.0 SL3.0ch10 58071670 58071800 NA 0 0 10.1038/hdy.2013.45 t4081.M021848.1 NA t4081.T000082 sov2 4 Fruit width, width at the widest position QTL analysis GBL x YP (09S96) F2 12EP186 NA NA 0 0 NA 0 0 10.1038/hdy.2013.45 NA NA t4081.T000083 Bwr-12 1 Bacterial wilt resistance, resistance to bacterial wilt (Ralstonia solanacearum) QTL analysis Hawaii 7996 x WVa700 RIL SLM12-10 NA NA 0 0 SLM12-2 NA 0 0 4.6 (CIM), 7.0 (SIM) 10.1007/s10681-012-0830-x NA NA t4081.T000084 Bwr-3 1 Bacterial wilt resistance, resistance to bacterial wilt (Ralstonia solanacearum) QTL analysis Hawaii 7996 x WVa700 RIL D1304J20 NA NA 0 0 afh34a NA 0 0 4.5 (SIM) 10.1007/s10681-012-0830-x NA NA t4081.T000085 Bwr-4 1 Bacterial wilt resistance, Ralstonia solanacearum race 3 resistance, CSH (Bacterial colonization scores in hypocotyl) QTL analysis Hawaii 7996 x WVa700 F2:3 CD49 NA NA 0 0 CD73 NA 0 0 4.8 10.1007/s00122-006-0277-3 NA NA t4081.T000086 Bwr-6 1 Bacterial wilt resistance, resistance to bacterial wilt (Ralstonia solanacearum) QTL analysis Hawaii 7996 x WVa700 RIL SLM6-82 NA NA 0 0 SLM6-91 NA 0 0 7.0 (SIM) 10.1007/s10681-012-0830-x NA NA t4081.T000087 Bwr-6a 1 Bacterial wilt resistance, resistance to bacterial wilt (Ralstonia solanacearum) QTL analysis Hawaii 7996 x WVa700 RIL SLM6-124 NA NA 0 0 SLM6-118 NA 0 0 5.0 (CIM), 3.9 (SIM) 10.1007/s10681-012-0830-x NA NA t4081.T000088 Bwr-6b 1 Bacterial wilt resistance, resistance to bacterial wilt (Ralstonia solanacearum) QTL analysis Hawaii 7996 x WVa700 RIL SLM6-119 NA NA 0 0 SLM6-136 NA 0 0 9.6 (CIM), 11.1 (SIM) 10.1007/s10681-012-0830-x NA NA t4081.T000089 Bwr-6c 1 Bacterial wilt resistance, resistance to bacterial wilt (Ralstonia solanacearum) QTL analysis Hawaii 7996 x WVa700 RIL SLM6-17 SL3.0 SL3.0ch06 38764730 38764915 SLM6-94 NA 0 0 8.2 (CIM) 10.1007/s10681-012-0830-x t4081.M025016.1 NA t4081.T000090 Bwr-6d 1 Bacterial wilt resistance, resistance to bacterial wilt (Ralstonia solanacearum) QTL analysis Hawaii 7996 x WVa700 RIL SLM6-94 NA NA 0 0 SLM6-110 NA 0 0 5.0 (CIM), 6.2 (SIM) 10.1007/s10681-012-0830-x NA NA t4081.T000091 Bwr-8 1 Bacterial wilt resistance, Ralstonia solanacearum race 3 resistance, CSH (Bacterial colonization scores in hypocotyl) QTL analysis Hawaii 7996 x WVa700 F2:3 CD40 NA NA 0 0 CT135 NA 0 0 3.61 10.1007/s00122-006-0277-3 NA NA t4081.T000092 1 Bacterial wilt resistant, Resisitance to Ralstonia solanacearum Pss4, AUDPC (area under the disease progress curve) QTL analysis Hawaii7996 x WVa700 F2 TG564 NA NA 0 0 NA 0 0 25.5 10.1094/MPMI.2000.13.1.6 NA NA t4081.T000093 1 Bacterial wilt resistant, Resisitance to Ralstonia solanacearum Pss4, PW (proportion of wilted plants) QTL analysis Hawaii7996 x WVa700 F2 GP504 NA NA 0 0 NA 0 0 2.3 10.1094/MPMI.2000.13.1.6 NA NA t4081.T000094 1 Bacterial wilt resistant, Resisitance to Ralstonia solanacearum Pss4, PW (proportion of wilted plants) QTL analysis Hawaii7996 x WVa700 F2 CP18 NA NA 0 0 NA 0 0 5.5 10.1094/MPMI.2000.13.1.6 NA NA t4081.T000095 1 Bacterial wilt resistant, Resisitance to Ralstonia solanacearum Pss4, PW (proportion of wilted plants) QTL analysis Hawaii7996 x WVa700 F2 CT135 NA NA 0 0 NA 0 0 3.5 10.1094/MPMI.2000.13.1.6 NA NA t4081.T000096 dan11.1 4 Distal fruit end shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 TG36 NA NA 0 0 NA 0 0 3.7 10.1007/s00122-007-0698-7 NA NA t4081.T000097 dan3.1 4 Distal fruit end shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 TG242 NA NA 0 0 NA 0 0 5.6 10.1007/s00122-007-0698-7 NA NA t4081.T000098 dan7.2 4 Distal fruit end shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 COS103 NA NA 0 0 NA 0 0 37.2 10.1007/s00122-007-0698-7 NA NA t4081.T000099 dan8.1 4 Distal fruit end shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 TG176 NA NA 0 0 NA 0 0 5.6 10.1007/s00122-007-0698-7 t4081.M021335.1 NA t4081.T000100 dblk7.1 4 Distal fruit end shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 COS103 NA NA 0 0 NA 0 0 6.7 10.1007/s00122-007-0698-7 NA NA t4081.T000101 fs7.1 4 Fruit shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 COS103 NA NA 0 0 NA 0 0 34.4 10.1007/s00122-007-0698-7 NA NA t4081.T000102 fs8.1 4 Fruit shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 TG176 NA NA 0 0 NA 0 0 5.4 10.1007/s00122-007-0698-7 t4081.M021335.1 NA t4081.T000103 hrt2.1 4 Fruit shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 TG337 NA NA 0 0 NA 0 0 4.5 10.1007/s00122-007-0698-7 NA NA t4081.T000104 hrt7.2 4 Fruit shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 COS103 NA NA 0 0 NA 0 0 9.2 10.1007/s00122-007-0698-7 NA NA t4081.T000105 hrt7.3 4 Fruit shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 TG20 NA NA 0 0 NA 0 0 4.7 10.1007/s00122-007-0698-7 t4081.M024735.1 NA t4081.T000106 pan2.1 4 Proximal fruit end shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 TG537 SL3.0 SL3.0ch02 51681005 51681449 NA 0 0 3.7 10.1007/s00122-007-0698-7 t4081.M021316.1 NA t4081.T000107 pan7.2 4 Proximal fruit end shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 COS103 NA NA 0 0 NA 0 0 10.5 10.1007/s00122-007-0698-7 NA NA t4081.T000108 pan7.3 4 Proximal fruit end shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 TG20 NA NA 0 0 NA 0 0 3.7 10.1007/s00122-007-0698-7 t4081.M024735.1 NA t4081.T000109 pblk2.1 4 Proximal fruit end shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 TG537 SL3.0 SL3.0ch02 51681005 51681449 NA 0 0 5.7 10.1007/s00122-007-0698-7 t4081.M021316.1 NA t4081.T000110 pblk2.2 4 Proximal fruit end shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 TG165 NA NA 0 0 NA 0 0 3.7 10.1007/s00122-007-0698-7 NA NA t4081.T000111 piar7.1 4 Proximal fruit end shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 COS103 NA NA 0 0 NA 0 0 7.6 10.1007/s00122-007-0698-7 NA NA t4081.T000112 psh7.1 4 Proximal fruit end shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 COS103 NA NA 0 0 NA 0 0 10.5 10.1007/s00122-007-0698-7 NA NA t4081.T000113 tri11.2 4 Fruit shape QTL analysis HGF2 (S. lycopersicum cv. Howard German x S. pimpinellifolium LA1589) F2 SSR80 SL3.0 SL3.0ch11 2274394 2274579 NA 0 0 3.7 10.1007/s00122-007-0698-7 t4081.M024930.1 NA t4081.T000114 acds8.1/HS 5 Total acids, The sum of citric, malic and glutamic acid QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 CD40 NA NA 0 0 NA 0 0 6 10.1023/A:1020209930031 NA NA t4081.T000115 acds9.1/HS 5 Total acids, The sum of citric, malic and glutamic acid QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 CT74 NA NA 0 0 NA 0 0 74 10.1023/A:1020209930031 NA NA t4081.T000116 brx3.1/HS 5 Soluble solids content, Soluble solids content (brix) QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 CT243 NA NA 0 0 NA 0 0 105 10.1023/A:1020209930031 NA NA t4081.T000117 brx4.1/HS 5 Soluble solids content, Soluble solids content (brix) QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG163 NA NA 0 0 NA 0 0 121 10.1023/A:1020209930031 NA NA t4081.T000118 ca2.1/HS 5 Citric acid content QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG308 NA NA 0 0 NA 0 0 55 10.1023/A:1020209930031 NA NA t4081.T000119 ca2.2/HS 5 Citric acid content QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG620B NA NA 0 0 NA 0 0 121 10.1023/A:1020209930031 NA NA t4081.T000120 ca4.1/HS 5 Citric acid content QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG208 NA NA 0 0 NA 0 0 50 10.1023/A:1020209930031 NA NA t4081.T000121 ca8.1/HS 5 Citric acid content QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 CT27 NA NA 0 0 NA 0 0 6 10.1023/A:1020209930031 NA NA t4081.T000122 ca9.1/HS 5 Citric acid content QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG390 NA NA 0 0 NA 0 0 56 10.1023/A:1020209930031 NA NA t4081.T000123 frt10.1/HS 5 Fruitness, Fruitiness, as determined by a trained taste panel QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG233 NA NA 0 0 NA 0 0 90 10.1023/A:1020209930031 NA NA t4081.T000124 frt2.1/HS 5 Fruitness, Fruitiness, as determined by a trained taste panel QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG353 NA NA 0 0 NA 0 0 62 10.1023/A:1020209930031 NA NA t4081.T000125 frt8.1/HS 5 Fruitness, Fruitiness, as determined by a trained taste panel QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 CD40 NA NA 0 0 NA 0 0 6 10.1023/A:1020209930031 NA NA t4081.T000126 fru/glu1.1/HS 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 CT267 NA NA 0 0 NA 0 0 87 10.1023/A:1020209930031 NA NA t4081.T000127 fru/glu11.1/HS 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 CT168 NA NA 0 0 NA 0 0 21 10.1023/A:1020209930031 t4081.M021621.1 NA t4081.T000128 fru/glu2.1/HS 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 CT213 NA NA 0 0 NA 0 0 25 10.1023/A:1020209930031 NA NA t4081.T000129 fru/glu3.1/HS 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG40 NA NA 0 0 NA 0 0 0 10.1023/A:1020209930031 t4081.M021276.1 NA t4081.T000130 fru/glu4.1/HS 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG208 NA NA 0 0 NA 0 0 50 10.1023/A:1020209930031 NA NA t4081.T000131 fru/glu5.1/HS 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG69 NA NA 0 0 NA 0 0 89 10.1023/A:1020209930031 NA NA t4081.T000132 fru/glu9.1/HS 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG390 NA NA 0 0 NA 0 0 56 10.1023/A:1020209930031 NA NA t4081.T000133 ga2.1/HS 5 Glutamic acid content QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 CT9 NA NA 0 0 NA 0 0 88 10.1023/A:1020209930031 NA NA t4081.T000134 ga3.1/HS 5 Glutamic acid content QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 CT243 NA NA 0 0 NA 0 0 105 10.1023/A:1020209930031 NA NA t4081.T000135 gal2.1/HS 5 Gractose content QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG204 NA NA 0 0 NA 0 0 106 10.1023/A:1020209930031 NA NA t4081.T000136 ma1.1/HS 5 Malic acid content QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 CT267 NA NA 0 0 NA 0 0 87 10.1023/A:1020209930031 NA NA t4081.T000137 ma2.1/HS 5 Malic acid content QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG140 NA NA 0 0 NA 0 0 109 10.1023/A:1020209930031 NA NA t4081.T000138 ma3.1/HS 5 Malic acid content QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG40 NA NA 0 0 NA 0 0 0 10.1023/A:1020209930031 t4081.M021276.1 NA t4081.T000139 ma5.1/HS 5 Malic acid content QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG69 NA NA 0 0 NA 0 0 89 10.1023/A:1020209930031 NA NA t4081.T000140 pH1.1/HS 5 Fruit pH QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 CT231 NA NA 0 0 NA 0 0 38 10.1023/A:1020209930031 NA NA t4081.T000141 pH10.1/HS 5 Fruit pH QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG313 NA NA 0 0 NA 0 0 2 10.1023/A:1020209930031 NA NA t4081.T000142 pH2.1/HS 5 Fruit pH QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 CT255A NA NA 0 0 NA 0 0 28 10.1023/A:1020209930031 NA NA t4081.T000143 pH2.2/HS 5 Fruit pH QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG620B NA NA 0 0 NA 0 0 121 10.1023/A:1020209930031 NA NA t4081.T000144 pH5.1/HS 5 Fruit pH QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG69 NA NA 0 0 NA 0 0 89 10.1023/A:1020209930031 NA NA t4081.T000145 pH8.1/HS 5 Fruit pH QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 CD40 NA NA 0 0 NA 0 0 6 10.1023/A:1020209930031 NA NA t4081.T000146 pH9.1/HS 5 Fruit pH QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG390 NA NA 0 0 NA 0 0 56 10.1023/A:1020209930031 NA NA t4081.T000147 suc2.1/HS 5 Sucrose content QTL analysis HS (Solanum hirsutum (LA1777) x Solanum esculentum E6203) BC3 TG620B NA NA 0 0 NA 0 0 121 10.1023/A:1020209930031 NA NA t4081.T000148 f 4 locule number QTL analysis IL11-3 x LA0767 F2 TG105A, TG546 NA NA 0 0 NA 0 0 10.1007/s00122-004-1676-y NA NA t4081.T000149 f 4 locule number QTL analysis IL11-3 x LA2371 F2 TG105A SL3.0 SL3.0ch06 41956447 41956654 NA 0 0 10.1007/s00122-004-1676-y t4081.M024919.1 NA t4081.T000150 f 4 locule number QTL analysis IL11-4 x LA0767 F2 TG105A, TG393 NA NA 0 0 NA 0 0 10.1007/s00122-004-1676-y NA NA t4081.T000151 Brix9-2-5 5 Sugar content, total soluble solids of the fruit (mainly sugars, measured in Brix units (B)) QTL analysis IL9-2-5 (Solanum pennellii chromosome segment introgression line) x Solanum esculentum cv. M82 F2 Lin5 NA NA 0 0 NA 0 0 10.1007/s00438-001-0599-4 NA NA t4081.T000152 PW9-2-5 5 Sugar content, total soluble solids of the fruit (mainly sugars, measured in Brix units (B)) QTL analysis IL9-2-5 (Solanum pennellii chromosome segment introgression line) x Solanum esculentum cv. M82 F2 SP-9D NA NA 0 0 NA 0 0 10.1007/s00438-001-0599-4 NA NA t4081.T000153 Ph3 1 Late blight resistance, late blight resistance against P. infestans isolate Pi733 QTL analysis L3708 (S. pimpinellifolium) x T3224 F2:3 09g66864250 NA NA 0 0 NA 0 0 116.4 25.44 10.1371/journal.pone.0096417 t4081.M024417.1 NA t4081.T000154 qph2.1 1 Late blight resistance, late blight resistance against P. infestans isolate Pi733 QTL analysis L3708 (S. pimpinellifolium) x T3224 F2:3 02g30827526 NA NA 0 0 NA 0 0 13.7 8.18 10.1371/journal.pone.0096417 t4081.M024196.1 NA t4081.T000155 f 4 locule number QTL analysis LA0925 x LA0716 F2 TG105A SL3.0 SL3.0ch06 41956447 41956654 NA 0 0 10.1007/s00122-004-1676-y t4081.M024919.1 NA t4081.T000156 lc 4 locule number QTL analysis LA0925 x LA0716 F2 CLET7E12 NA NA 0 0 NA 0 0 10.1007/s00122-004-1676-y NA NA t4081.T000157 lc 4 locule number QTL analysis LA0925 x LA0716 F2 TG337 NA NA 0 0 NA 0 0 10.1007/s00122-004-1676-y NA NA t4081.T000158 lcn1.1 4 locule number QTL analysis LA0925 x LA0716 F2 TG337 NA NA 0 0 NA 0 0 10.1007/s00122-004-1676-y NA NA t4081.T000159 lcn2.2 4 locule number QTL analysis LA0925 x LA0716 F2 TG347 NA NA 0 0 NA 0 0 10.1007/s00122-004-1676-y NA NA t4081.T000160 f 4 locule number QTL analysis LA1589 x LA2352 F2 TG105A SL3.0 SL3.0ch06 41956447 41956654 NA 0 0 10.1007/s00122-004-1676-y t4081.M024919.1 NA t4081.T000161 lc 4 locule number QTL analysis LA1589 x LA2352 F2 TG469 NA NA 0 0 NA 0 0 10.1007/s00122-004-1676-y NA NA t4081.T000162 FA11_ai5:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 BC1F1 C2_At2g27290 NA NA 0 0 C2_At5g60600 NA 0 0 69.6 10.1007/s11032-014-0110-7 NA NA t4081.T000163 FA11_Extended length 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 BC1F1 C2_At2g14260 NA NA 0 0 TG400 NA 0 0 51.5 10.1007/s11032-014-0110-7 NA NA t4081.T000164 FA11_i4:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 BC1F1 C2_At5g60600 NA NA 0 0 C2_At5g25760 NA 0 0 78.9 10.1007/s11032-014-0110-7 NA NA t4081.T000165 FA2_Extended iso-odd 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 FALSE C2_At1g65900 NA NA 0 0 C2_At3g01160 NA 0 0 51.4 10.1007/s11032-014-0110-7 NA NA t4081.T000166 FA2_i10:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 BC1F1 C2_At1g65900 NA NA 0 0 C2_At3g01160 NA 0 0 49.4 10.1007/s11032-014-0110-7 NA NA t4081.T000167 FA2_i11:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 BC1F1 C2_At1g65900 NA NA 0 0 C2_At3g01160 NA 0 0 51.4 10.1007/s11032-014-0110-7 NA NA t4081.T000168 FA2_i13:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 BC1F1 C2_At1g65900 NA NA 0 0 C2_At3g01160 NA 0 0 52.4 10.1007/s11032-014-0110-7 NA NA t4081.T000169 FA2_i9:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 FALSE C2_At1g65900 NA NA 0 0 C2_At3g01160 NA 0 0 50.4 10.1007/s11032-014-0110-7 NA NA t4081.T000170 FA2_n10:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 BC1F1 C2_At1g65900 NA NA 0 0 C2_At3g01160 NA 0 0 52.4 10.1007/s11032-014-0110-7 NA NA t4081.T000171 FA2_n12:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 BC1F1 C2_At3g01160 NA NA 0 0 C2_At3g55250 NA 0 0 53.5 10.1007/s11032-014-0110-7 NA NA t4081.T000172 FA2_Straight chain 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 FALSE C2_At3g01160 NA NA 0 0 C2_At3g55250 NA 0 0 53.5 10.1007/s11032-014-0110-7 NA NA t4081.T000173 FA4_ai5:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 FALSE C2_At2g20390 NA NA 0 0 C2_At5g50720 NA 0 0 20.7 10.1007/s11032-014-0110-7 NA NA t4081.T000174 FA4_ai6:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 FALSE C2_At5g50720 NA NA 0 0 TG182 NA 0 0 24.1 10.1007/s11032-014-0110-7 NA NA t4081.T000175 FA5_ai5:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 FALSE C2_At1g10500 NA NA 0 0 U221402 NA 0 0 76.3 10.1007/s11032-014-0110-7 NA NA t4081.T000176 FA5_Extended iso-odd 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 FALSE C2_At1g10500 NA NA 0 0 U221402 NA 0 0 76.3 10.1007/s11032-014-0110-7 NA NA t4081.T000177 FA5_Extended length 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 FALSE C2_At1g10500 NA NA 0 0 U221402 NA 0 0 76.3 10.1007/s11032-014-0110-7 NA NA t4081.T000178 FA5_i11:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 FALSE C2_At1g10500 NA NA 0 0 U221402 NA 0 0 76.3 10.1007/s11032-014-0110-7 NA NA t4081.T000179 FA5_i13:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 FALSE U221402 NA NA 0 0 C2_At3g55800 NA 0 0 79.3 10.1007/s11032-014-0110-7 NA NA t4081.T000180 FA5_i4:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 FALSE C2_At1g10500 NA NA 0 0 U221402 NA 0 0 76.3 10.1007/s11032-014-0110-7 NA NA t4081.T000181 FA6_n10:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 FALSE SP NA NA 0 0 C2_At1g29900 NA 0 0 54.1 10.1007/s11032-014-0110-7 NA NA t4081.T000182 FA7_i13:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 FALSE C2_At2g26590 NA NA 0 0 C2_At2g30520 NA 0 0 1 10.1007/s11032-014-0110-7 NA NA t4081.T000183 FA7_i9:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 FALSE C2_At2g30520 NA NA 0 0 C2_At1g03820 NA 0 0 15.7 10.1007/s11032-014-0110-7 NA NA t4081.T000184 FA7_n10:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 FALSE C2_At2g30520 NA NA 0 0 C2_At1g03820 NA 0 0 5.7 10.1007/s11032-014-0110-7 NA NA t4081.T000185 FA8_ai6:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 BC1F1 U221657 NA NA 0 0 C2_At2g25950 NA 0 0 2 10.1007/s11032-014-0110-7 NA NA t4081.T000186 FA8_i4:0 5 fatty acid content, regulation of fatty acid profile of acylsugars QTL analysis LA716 x CU071026 FALSE C2_At5g20910 NA NA 0 0 SSR38 NA 0 0 11.7 10.1007/s11032-014-0110-7 NA NA t4081.T000187 I-3 1 Fusarium wilt resistance QTL analysis M82 x IL7-3 F2 CT226 SL3.0 SL3.0ch07 63616072 63616478 TG572 NA 0 0 10.1007/s00122-004-1646-4 t4081.M021369.1 t4081.M024872.1 t4081.T000188 fw1.1 3 Fruit weight, Fruit weight (g) QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL cLEC34L10a NA NA 0 0 cLEI16L6 NA 0 0 0 3.3 10.1007/s11032-011-9643-1 NA NA t4081.T000189 fw1.2 3 Fruit weight, Fruit weight (g) QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL TG70 NA NA 0 0 cTOF20P4 NA 0 0 34 4.8 10.1007/s11032-011-9643-1 NA NA t4081.T000190 fw11.1 3 Fruit weight, Fruit weight (g) QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL TG400 NA NA 0 0 CT65 NA 0 0 94.1 7.31 10.1007/s11032-011-9643-1 NA NA t4081.T000191 fw12.1 3 Fruit weight, Fruit weight (g) QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL TG180CAPS NA NA 0 0 cLEC67B16b NA 0 0 0 4.11 10.1007/s11032-011-9643-1 NA NA t4081.T000192 fw2.1 3 Fruit weight, Fruit weight (g) QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL cTOD16E7 NA NA 0 0 TG151 NA 0 0 65.5 10 10.1007/s11032-011-9643-1 NA NA t4081.T000193 fw3.1 3 Fruit weight, Fruit weight (g) QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL cLEX12O16b NA NA 0 0 SSR320 NA 0 0 41.6 11.1 10.1007/s11032-011-9643-1 NA NA t4081.T000194 fw4.1 3 Fruit weight, Fruit weight (g) QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL cTOF14B17a NA NA 0 0 C25 NA 0 0 58 2.74 10.1007/s11032-011-9643-1 NA NA t4081.T000195 lyc12.1 5 Lycopene content, Lycopene (g/g) colorimeter assay QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL cTOS21D14 NA NA 0 0 CD2 NA 0 0 72.4 12.87 10.1007/s11032-011-9643-1 NA NA t4081.T000196 lyc7.1 5 Lycopene content, Lycopene (g/g) colorimeter assay QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL cTOS19O5 NA NA 0 0 SSR241 NA 0 0 0 5.41 10.1007/s11032-011-9643-1 NA NA t4081.T000197 mty1.1 4 Plant maturity QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL cLEC34L10a NA NA 0 0 cLEI16L6 NA 0 0 0 4.01 10.1007/s11032-011-9643-1 NA NA t4081.T000198 mty2.1 4 Plant maturity QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL CT176 NA NA 0 0 CT103 NA 0 0 19.5 3.22 10.1007/s11032-011-9643-1 NA NA t4081.T000199 mty2.2 4 Plant maturity QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL TG463 NA NA 0 0 TG151 NA 0 0 63.2 2.46 10.1007/s11032-011-9643-1 NA NA t4081.T000200 mty5.1 4 Plant maturity QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL cLEX12O16a NA NA 0 0 TG351 NA 0 0 62 6.89 10.1007/s11032-011-9643-1 NA NA t4081.T000201 ssc1.1 5 Fruit soluble solids content (Brix) QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL cLEC34L10b NA NA 0 0 cTOF20P4 NA 0 0 19.1 4.06 10.1007/s11032-011-9643-1 NA NA t4081.T000202 ssc1.2 5 Fruit soluble solids content (Brix) QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL CT163 NA NA 0 0 cLEZ11K12 NA 0 0 110 3.99 10.1007/s11032-011-9643-1 NA NA t4081.T000203 ssc10.11 5 Fruit soluble solids content (Brix) QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL TG303CAPS NA NA 0 0 cLER4F5a NA 0 0 3 2.92 10.1007/s11032-011-9643-1 NA NA t4081.T000204 ssc12.1 5 Fruit soluble solids content (Brix) QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL CT55a NA NA 0 0 OH275 NA 0 0 33.9 5.17 10.1007/s11032-011-9643-1 NA NA t4081.T000205 ssc3.1 5 Fruit soluble solids content (Brix) QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL CT85 NA NA 0 0 TG214 NA 0 0 33 3.36 10.1007/s11032-011-9643-1 NA NA t4081.T000206 ssc5.1 5 Fruit soluble solids content (Brix) QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL cLEX12O16a NA NA 0 0 TG185 NA 0 0 66.4 3.31 10.1007/s11032-011-9643-1 NA NA t4081.T000207 ssc6.1 5 Fruit soluble solids content (Brix) QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL CT216 NA NA 0 0 cLEG49O24 NA 0 0 1.8 3.75 10.1007/s11032-011-9643-1 NA NA t4081.T000208 ssc6.2 5 Fruit soluble solids content (Brix) QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL cLEN10H12 NA NA 0 0 cLEC75A1 NA 0 0 26.9 3.53 10.1007/s11032-011-9643-1 NA NA t4081.T000209 ssc7.1 5 Fruit soluble solids content (Brix) QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL TG252 NA NA 0 0 TG128 SL3.0ch07 62688853 62689295 34.9 3.6 10.1007/s11032-011-9643-1 NA t4081.M021364.1 t4081.T000210 ssc8.1 5 Fruit soluble solids content (Brix) QTL analysis NCEBR-1 x LA2093 (S. pimpinellifolium) RIL CT111 NA NA 0 0 TG294 SL3.0ch08 65868192 65869092 60.8 3.1 10.1007/s11032-011-9643-1 NA t4081.M021339.1 t4081.T000211 1 Late blight resistance QTL analysis NIL11 (contained a single heterozygous S. hirsutum LA2099 segment spanning the lb11b QTL intervals in an otherwise S. esculentum NIL CT182 NA NA 0 0 NA 0 0 4 10.1007/s00122-003-1469-8 NA NA t4081.T000212 1 Late blight resistance QTL analysis NIL4 (contained a single heterozygous S. hirsutum LA2099 segment spanning the lb4 QTL intervals in an otherwise S. esculentum ge NIL TG609 SL3.0 SL3.0ch04 7790575 7790954 NA 0 0 4 10.1007/s00122-003-1469-8 t4081.M021321.1 NA t4081.T000213 3 Fruit size QTL analysis NIL5 (contained a single heterozygous S. hirsutum LA2099 segment spanning the lb5b QTL intervals in an otherwise S. esculentum g NIL CT202 NA NA 0 0 NA 0 0 5.3 10.1007/s00122-003-1469-8 NA NA t4081.T000214 1 Late blight resistance, plant height QTL analysis NIL5 NIL TG23 NA NA 0 0 CT80 NA 0 0 1.5 10.1007/s00122-003-1469-8 NA t4081.M021638.1 t4081.T000215 1 resistance to bacterial spot, resistance to bacterial spot caused by T2 races of X. vesicatoria GWAS NULL NULL SSR71 NA NA 0 0 NA 0 0 1.62 10.17660/ActaHortic.2005.695.26 NA NA t4081.T000216 5 ascorbic acid content, ascorbic acid content in fruits at the red-ripe stage GWAS NULL NULL TGS127 NA NA 0 0 NA 0 0 89.48 2.398 10.1007/s10681-015-1567-0 NA NA t4081.T000217 4 fruit color, fruit lightness, colour on the yellow-to-blue scale GWAS NULL NULL TGS1372 SL3.0 SL3.0ch02 50382604 50382871 NA 0 0 44.32 2.398 10.1007/s10681-015-1567-0 t4081.M012642.1 NA t4081.T000218 4 fruit color, fruit lightness, colour on the red-to-green scale GWAS NULL NULL TGS500 NA NA 0 0 NA 0 0 42.45 2.398 10.1007/s10681-015-1567-0 NA NA t4081.T000219 5 ascorbic acid content, ascorbic acid content in fruits at the red-ripe stage GWAS NULL NULL SSR150 NA NA 0 0 NA 0 0 115 2.398 10.1007/s10681-015-1567-0 NA NA t4081.T000220 5 soluble solid content, soluble solid content in fruits at the red-ripe stage GWAS NULL NULL SSR41 NA NA 0 0 NA 0 0 34 2.523 10.1007/s10681-015-1567-0 NA NA t4081.T000221 4 fruit color, fruit lightness, colour on the red-to-green scale GWAS NULL NULL TES628 NA NA 0 0 NA 0 0 2.23 2.398 10.1007/s10681-015-1567-0 NA NA t4081.T000222 4 fruit color, fruit lightness, colour on the yellow-to-blue scale GWAS NULL NULL TES1075 SL3.0 SL3.0ch07 55306617 55306862 NA 0 0 52.51 2.301 10.1007/s10681-015-1567-0 t4081.M001244.1 NA t4081.T000223 1 resistance to bacterial spot, resistance to bacterial spot caused by T2 races of X. vesicatoria GWAS NULL NULL CosOH64 NA NA 0 0 NA 0 0 1.693 10.17660/ActaHortic.2005.695.26 NA NA t4081.T000224 3 fruit equatorial diameter, fruit equatorial diameter at the red-ripe stage GWAS NULL NULL TOM166 NA NA 0 0 NA 0 0 3.1 2.301 10.1007/s10681-015-1567-0 NA NA t4081.T000224 4 fruit equatorial diameter, fruit equatorial diameter at the red-ripe stage GWAS NULL NULL TOM166 NA NA 0 0 NA 0 0 3.1 2.301 10.1007/s10681-015-1567-0 NA NA t4081.T000225 1 resistance to bacterial spot, resistance to bacterial spot caused by T4 strains of X. perforans GWAS NULL NULL SSR318 NA NA 0 0 NA 0 0 1.833 10.17660/ActaHortic.2005.695.26 NA NA t4081.T000226 1 resistance to bacterial spot, resistance to bacterial spot caused by T2 races of X. vesicatoria GWAS NULL NULL SSR637.2 NA NA 0 0 NA 0 0 1.489 10.17660/ActaHortic.2005.695.26 NA NA t4081.T000227 1 resistance to bacterial spot, resistance to bacterial spot caused by T2 races of X. vesicatoria GWAS NULL NULL CT100 NA NA 0 0 NA 0 0 1.419 10.17660/ActaHortic.2005.695.26 NA NA t4081.T000228 drwp1.2 1 Salt tolerance conferred by rootstocks, salt tolerance (dried root weight (DRWp)) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 CT167_530 NA NA 0 0 SSRW75_175 NA 0 0 17.2 2.09 10.1007/s00122-010-1294-9 NA NA t4081.T000229 drwp2.1 1 Salt tolerance conferred by rootstocks, salt tolerance (dried root weight (DRWp)) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR12_140 NA NA 0 0 NA 0 0 60.4 2.22 10.1007/s00122-010-1294-9 NA NA t4081.T000230 drwp5.1 1 Salt tolerance conferred by rootstocks, salt tolerance (dried root weight (DRWp)) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW43_460 NA NA 0 0 NA 0 0 34.5 4.44 10.1007/s00122-010-1294-9 NA NA t4081.T000231 frwp1.1 1 Salt tolerance conferred by rootstocks, salt tolerance (proportions of the fresh root weight (FRWp) ) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW44_700 NA NA 0 0 NA 0 0 2.6 2.22 10.1007/s00122-010-1294-9 NA NA t4081.T000232 frwp1.2 1 Salt tolerance conferred by rootstocks, salt tolerance (proportions of the fresh root weight (FRWp) ) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 CT167_530 NA NA 0 0 SSRW75_175 NA 0 0 17.2 4.01 10.1007/s00122-010-1294-9 NA NA t4081.T000233 frwp5.1 1 Salt tolerance conferred by rootstocks, salt tolerance (proportions of the fresh root weight (FRWp) ) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW43_460 NA NA 0 0 NA 0 0 34.5 7.42 10.1007/s00122-010-1294-9 NA NA t4081.T000234 g2LCa11.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Ca concentration in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW76_230 NA NA 0 0 NA 0 0 0 2.28 10.1007/s00122-010-1294-9 NA NA t4081.T000235 g2LCu1.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Cu concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR41_200 NA NA 0 0 NHX4 NA 0 0 42.6 1.81 10.1007/s00122-010-1294-9 NA NA t4081.T000236 g2LCu1.2 1 Salt tolerance conferred by rootstocks, salt tolerance (Cu concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW75_175 NA NA 0 0 SSR41_200 NA 0 0 32.2 1.88 10.1007/s00122-010-1294-9 NA NA t4081.T000237 g2LCu12.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Cu concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW223_370 NA NA 0 0 NA 0 0 0 2.59 10.1007/s00122-010-1294-9 NA NA t4081.T000238 g2LCu4.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Cu concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR31_130 NA NA 0 0 NA 0 0 0.7 1.92 10.1007/s00122-010-1294-9 NA NA t4081.T000239 g2LCu7.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Cu concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR34_750 NA NA 0 0 SSRW565_396 NA 0 0 46.9 1.85 10.1007/s00122-010-1294-9 NA NA t4081.T000240 g2LK4.1 1 Salt tolerance conferred by rootstocks, salt tolerance (K concentration in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 TG43_750 NA NA 0 0 L_900 NA 0 0 6.3 1.83 10.1007/s00122-010-1294-9 NA NA t4081.T000241 g2LNa1.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Na concentration in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR30_300 NA NA 0 0 NA 0 0 0 2.47 10.1007/s00122-010-1294-9 NA NA t4081.T000242 g2LNa5.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Na concentration in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW344_430 NA NA 0 0 NA 0 0 35.9 3.89 10.1007/s00122-010-1294-9 NA NA t4081.T000243 g2LP1.1 1 Salt tolerance conferred by rootstocks, salt tolerance (P concentration in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR30_300 NA NA 0 0 NA 0 0 0 2 10.1007/s00122-010-1294-9 NA NA t4081.T000244 g2LP2.1 1 Salt tolerance conferred by rootstocks, salt tolerance (P concentration in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW104_900 NA NA 0 0 CT156_870 NA 0 0 30.1 2.36 10.1007/s00122-010-1294-9 NA NA t4081.T000245 g2LP7.1 1 Salt tolerance conferred by rootstocks, salt tolerance (P concentration in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR22_344 NA NA 0 0 NA 0 0 26 5.38 10.1007/s00122-010-1294-9 NA NA t4081.T000246 g2LP7.2 1 Salt tolerance conferred by rootstocks, salt tolerance (P concentration in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR34_750 NA NA 0 0 SSRW565_396 NA 0 0 46.9 3.46 10.1007/s00122-010-1294-9 NA NA t4081.T000247 g2LS2.1 1 Salt tolerance conferred by rootstocks, salt tolerance (S concentration in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR9_220 NA NA 0 0 NA 0 0 47.4 2.22 10.1007/s00122-010-1294-9 NA NA t4081.T000248 g2LS5.1 1 Salt tolerance conferred by rootstocks, salt tolerance (S concentration in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW344_430 NA NA 0 0 NA 0 0 35.9 3.5 10.1007/s00122-010-1294-9 NA NA t4081.T000249 g2LS8.1 1 Salt tolerance conferred by rootstocks, salt tolerance (S concentration in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR37_530 NA NA 0 0 SSRW344_750 NA 0 0 30.2 2.26 10.1007/s00122-010-1294-9 NA NA t4081.T000250 g2LWC1.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the leaflets in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR30_300 NA NA 0 0 NA 0 0 0 2.46 10.1007/s00122-010-1294-9 NA NA t4081.T000251 g2LWC3.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the leaflets in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 TG134_118 NA NA 0 0 NA 0 0 49.9 2.69 10.1007/s00122-010-1294-9 NA NA t4081.T000252 g2LWC5.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the leaflets in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 TG69_600 NA NA 0 0 NA 0 0 35.1 5.42 10.1007/s00122-010-1294-9 NA NA t4081.T000253 g2LWC7.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the leaflets in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW565_396 NA NA 0 0 NA 0 0 65.4 2.13 10.1007/s00122-010-1294-9 NA NA t4081.T000254 g2RaWC1.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the rachis in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR30_300 NA NA 0 0 NA 0 0 0 2.25 10.1007/s00122-010-1294-9 NA NA t4081.T000255 g2RaWC3.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the rachis in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 TG134_118 NA NA 0 0 NA 0 0 49.9 4.01 10.1007/s00122-010-1294-9 NA NA t4081.T000256 g2RaWC5.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the rachis in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR17_320 NA NA 0 0 NA 0 0 33.1 2.78 10.1007/s00122-010-1294-9 NA NA t4081.T000257 g2RaWC9.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the rachis in the second leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW69_130 NA NA 0 0 SSRW19_220 NA 0 0 22.1 2.98 10.1007/s00122-010-1294-9 NA NA t4081.T000258 g5LCa1.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Ca concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 CT167_530 NA NA 0 0 NA 0 0 7.2 1.98 10.1007/s00122-010-1294-9 NA NA t4081.T000259 g5LCu12.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Cu concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW94_450 NA NA 0 0 NA 0 0 2.6 2.88 10.1007/s00122-010-1294-9 NA NA t4081.T000260 g5LCu3.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Cu concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 TG134_118 NA NA 0 0 NA 0 0 49.9 2.06 10.1007/s00122-010-1294-9 NA NA t4081.T000261 g5LCu4.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Cu concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR31_130 NA NA 0 0 NA 0 0 0.7 1.87 10.1007/s00122-010-1294-9 NA NA t4081.T000262 g5LCu7.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Cu concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR34_750 NA NA 0 0 SSRW565_396 NA 0 0 51.9 2.22 10.1007/s00122-010-1294-9 NA NA t4081.T000263 g5LFe1.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Fe concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR30_300 NA NA 0 0 NA 0 0 0 2.06 10.1007/s00122-010-1294-9 NA NA t4081.T000264 g5LFe6.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Fe concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW11_490 NA NA 0 0 CT283_700 NA 0 0 32.7 1.86 10.1007/s00122-010-1294-9 NA NA t4081.T000265 g5LFe8.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Fe concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW38_250 NA NA 0 0 NA 0 0 52.6 2.58 10.1007/s00122-010-1294-9 NA NA t4081.T000266 g5LK6.1 1 Salt tolerance conferred by rootstocks, salt tolerance (K concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW47_220 NA NA 0 0 NA 0 0 3.3 1.93 10.1007/s00122-010-1294-9 NA NA t4081.T000267 g5LMg1.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Mg concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 CT167_530 NA NA 0 0 NA 0 0 7.2 2.15 10.1007/s00122-010-1294-9 NA NA t4081.T000268 g5LNa1.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Na concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR30_300 NA NA 0 0 NA 0 0 0 3.04 10.1007/s00122-010-1294-9 NA NA t4081.T000269 g5LNa5.1 1 Salt tolerance conferred by rootstocks, salt tolerance (Na concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 S_440 NA NA 0 0 NA 0 0 38.1 3.68 10.1007/s00122-010-1294-9 NA NA t4081.T000270 g5LP1.1 1 Salt tolerance conferred by rootstocks, salt tolerance (P concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR30_300 NA NA 0 0 NA 0 0 0 3.33 10.1007/s00122-010-1294-9 NA NA t4081.T000271 g5LP2.1 1 Salt tolerance conferred by rootstocks, salt tolerance (P concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW104_900 NA NA 0 0 CT156_870 NA 0 0 30.1 2.49 10.1007/s00122-010-1294-9 NA NA t4081.T000272 g5LP5.1 1 Salt tolerance conferred by rootstocks, salt tolerance (P concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR27_310 NA NA 0 0 SSR35_298 NA 0 0 22.6 2.46 10.1007/s00122-010-1294-9 NA NA t4081.T000273 g5LP5.2 1 Salt tolerance conferred by rootstocks, salt tolerance (P concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR21_900 NA NA 0 0 SSRW43_460 NA 0 0 34.5 2.7 10.1007/s00122-010-1294-9 NA NA t4081.T000274 g5LP7.1 1 Salt tolerance conferred by rootstocks, salt tolerance (P concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW285_290 NA NA 0 0 SSR22_344 NA 0 0 20.2 3.5 10.1007/s00122-010-1294-9 NA NA t4081.T000275 g5LS1.1 1 Salt tolerance conferred by rootstocks, salt tolerance (S concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW44_700 NA NA 0 0 NA 0 0 2.6 1.93 10.1007/s00122-010-1294-9 NA NA t4081.T000276 g5LS2.1 1 Salt tolerance conferred by rootstocks, salt tolerance (S concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR9_220 NA NA 0 0 NA 0 0 47.4 1.8 10.1007/s00122-010-1294-9 NA NA t4081.T000277 g5LS5.1 1 Salt tolerance conferred by rootstocks, salt tolerance (S concentration in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW344_430 NA NA 0 0 NA 0 0 35.9 1.95 10.1007/s00122-010-1294-9 NA NA t4081.T000278 g5LWC1.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the leaflets in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR30_300 NA NA 0 0 NA 0 0 0 2.53 10.1007/s00122-010-1294-9 NA NA t4081.T000279 g5LWC3.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the leaflets in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 TG134_118 NA NA 0 0 NA 0 0 49.9 3.99 10.1007/s00122-010-1294-9 NA NA t4081.T000280 g5LWC5.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the leaflets in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW344_430 NA NA 0 0 NA 0 0 35.9 4.38 10.1007/s00122-010-1294-9 NA NA t4081.T000281 g5LWC7.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the leaflets in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW565_396 NA NA 0 0 NA 0 0 65.4 2.16 10.1007/s00122-010-1294-9 NA NA t4081.T000282 g5LWC9.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the leaflets in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW19_220 NA NA 0 0 NA 0 0 24.4 1.75 10.1007/s00122-010-1294-9 NA NA t4081.T000283 g5RaWC3.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the rachis in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 TG134_118 NA NA 0 0 NA 0 0 49.9 4.03 10.1007/s00122-010-1294-9 NA NA t4081.T000284 g5RaWC5.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the rachis in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR17_320 NA NA 0 0 NA 0 0 33.1 2.39 10.1007/s00122-010-1294-9 NA NA t4081.T000285 g5RaWC7.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the rachis in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR24_750 NA NA 0 0 NA 0 0 83.5 1.86 10.1007/s00122-010-1294-9 NA NA t4081.T000286 g5RaWC8.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the rachis in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSR37_530 NA NA 0 0 SSRW344_750 NA 0 0 25.2 2.66 10.1007/s00122-010-1294-9 NA NA t4081.T000287 g5RaWC9.1 1 Salt tolerance conferred by rootstocks, salt tolerance (water content of the rachis in the fifth leaves) QTL analysis P population (S. lycopersicum var. cerasiforme x S. pimpinellifolium L.) F9 SSRW69_130 NA NA 0 0 SSRW19_220 NA 0 0 22.1 1.93 10.1007/s00122-010-1294-9 NA NA t4081.T000288 dlw5.1 1 Drying and weighting leaves under salinity conditions, drying and weighting leaves (g) QTL analysis P RIL,F8 SSRW43_460 NA NA 0 0 NA 0 0 34.49 14.74 10.1007/s00122-008-0720-8 NA NA t4081.T000288 dlw5.1 4 Drying and weighting leaves under salinity conditions, drying and weighting leaves (g) QTL analysis P RIL,F8 SSRW43_460 NA NA 0 0 NA 0 0 34.49 14.74 10.1007/s00122-008-0720-8 NA NA t4081.T000289 dsw1.1 1 Drying and weighting stems under control conditions, drying and weighting stems (g) QTL analysis P RIL,F8 SSR30_300 NA NA 0 0 NA 0 0 2.01 10.98 10.1007/s00122-008-0720-8 NA NA t4081.T000289 dsw1.1 4 Drying and weighting stems under control conditions, drying and weighting stems (g) QTL analysis P RIL,F8 SSR30_300 NA NA 0 0 NA 0 0 2.01 10.98 10.1007/s00122-008-0720-8 NA NA t4081.T000290 gfn3.1 1 Rootstock effect on the fruit yield under salinity conditions, gFN (fruit number) QTL analysis P RIL,F9 SSRW223_508 NA NA 0 0 NA 0 0 53.2 4.59 10.1007/s00122-008-0900-6 NA NA t4081.T000290 gfn3.1 3 Rootstock effect on the fruit yield under salinity conditions, gFN (fruit number) QTL analysis P RIL,F9 SSRW223_508 NA NA 0 0 NA 0 0 53.2 4.59 10.1007/s00122-008-0900-6 NA NA t4081.T000291 gfn5.1 1 Rootstock effect on the fruit yield under salinity conditions, gFN (fruit number) QTL analysis P RIL,F9 SSR21_900 NA NA 0 0 NA 0 0 33.9 2.91 10.1007/s00122-008-0900-6 NA NA t4081.T000291 gfn5.1 3 Rootstock effect on the fruit yield under salinity conditions, gFN (fruit number) QTL analysis P RIL,F9 SSR21_900 NA NA 0 0 NA 0 0 33.9 2.91 10.1007/s00122-008-0900-6 NA NA t4081.T000292 gfn6.1 1 Rootstock effect on the fruit yield under salinity conditions, gFN (fruit number) QTL analysis P RIL,F9 CT283_500 NA NA 0 0 NA 0 0 0 1.96 10.1007/s00122-008-0900-6 NA NA t4081.T000292 gfn6.1 3 Rootstock effect on the fruit yield under salinity conditions, gFN (fruit number) QTL analysis P RIL,F9 CT283_500 NA NA 0 0 NA 0 0 0 1.96 10.1007/s00122-008-0900-6 NA NA t4081.T000293 gfn6.2 1 Rootstock effect on the fruit yield under salinity conditions, gFN (fruit number) QTL analysis P RIL,F9 SSRW11_490 NA NA 0 0 CT283_700 NA 0 0 32.7 2.52 10.1007/s00122-008-0900-6 NA NA t4081.T000293 gfn6.2 3 Rootstock effect on the fruit yield under salinity conditions, gFN (fruit number) QTL analysis P RIL,F9 SSRW11_490 NA NA 0 0 CT283_700 NA 0 0 32.7 2.52 10.1007/s00122-008-0900-6 NA NA t4081.T000294 gfw9.1 1 Rootstock effect on the fruit yield under salinity conditions, gFW (fruits weight) QTL analysis P RIL,F9 SSRW19_220 NA NA 0 0 NA 0 0 24.4 2.81 10.1007/s00122-008-0900-6 NA NA t4081.T000294 gfw9.1 3 Rootstock effect on the fruit yield under salinity conditions, gFW (fruits weight) QTL analysis P RIL,F9 SSRW19_220 NA NA 0 0 NA 0 0 24.4 2.81 10.1007/s00122-008-0900-6 NA NA t4081.T000295 gtw3.1 1 Rootstock effect on the fruit yield under salinity conditions, gTW (total fruit weight) QTL analysis P RIL,F9 TG134_118 NA NA 0 0 NA 0 0 49.9 4.29 10.1007/s00122-008-0900-6 NA NA t4081.T000295 gtw3.1 3 Rootstock effect on the fruit yield under salinity conditions, gTW (total fruit weight) QTL analysis P RIL,F9 TG134_118 NA NA 0 0 NA 0 0 49.9 4.29 10.1007/s00122-008-0900-6 NA NA t4081.T000296 gtw5.1 1 Rootstock effect on the fruit yield under salinity conditions, gTW (total fruit weight) QTL analysis P RIL,F9 SSR21_900 NA NA 0 0 NA 0 0 33.9 3.36 10.1007/s00122-008-0900-6 NA NA t4081.T000296 gtw5.1 3 Rootstock effect on the fruit yield under salinity conditions, gTW (total fruit weight) QTL analysis P RIL,F9 SSR21_900 NA NA 0 0 NA 0 0 33.9 3.36 10.1007/s00122-008-0900-6 NA NA t4081.T000297 gtw6.1 1 Rootstock effect on the fruit yield under salinity conditions, gTW (total fruit weight) QTL analysis P RIL,F9 TG16_380 NA NA 0 0 NA 0 0 3.8 2.15 10.1007/s00122-008-0900-6 NA NA t4081.T000297 gtw6.1 3 Rootstock effect on the fruit yield under salinity conditions, gTW (total fruit weight) QTL analysis P RIL,F9 TG16_380 NA NA 0 0 NA 0 0 3.8 2.15 10.1007/s00122-008-0900-6 NA NA t4081.T000298 gtw6.2 1 Rootstock effect on the fruit yield under salinity conditions, gTW (total fruit weight) QTL analysis P RIL,F9 SSRW11_490 NA NA 0 0 CT283_700 NA 0 0 27.7 2.57 10.1007/s00122-008-0900-6 NA NA t4081.T000298 gtw6.2 3 Rootstock effect on the fruit yield under salinity conditions, gTW (total fruit weight) QTL analysis P RIL,F9 SSRW11_490 NA NA 0 0 CT283_700 NA 0 0 27.7 2.57 10.1007/s00122-008-0900-6 NA NA t4081.T000299 gtw9.1 1 Rootstock effect on the fruit yield under salinity conditions, gTW (total fruit weight) QTL analysis P RIL,F9 SSR30_450 NA NA 0 0 NA 0 0 26 2.58 10.1007/s00122-008-0900-6 NA NA t4081.T000299 gtw9.1 3 Rootstock effect on the fruit yield under salinity conditions, gTW (total fruit weight) QTL analysis P RIL,F9 SSR30_450 NA NA 0 0 NA 0 0 26 2.58 10.1007/s00122-008-0900-6 NA NA t4081.T000300 la5.1 1 Total leaf area under control conditions, total leaf area (dm2) QTL analysis P RIL,F8 SSR35_298 NA NA 0 0 NA 0 0 31.86 18.65 10.1007/s00122-008-0720-8 NA NA t4081.T000300 la5.1 4 Total leaf area under control conditions, total leaf area (dm2) QTL analysis P RIL,F8 SSR35_298 NA NA 0 0 NA 0 0 31.86 18.65 10.1007/s00122-008-0720-8 NA NA t4081.T000301 lkc1.1 1 K+ concentrations in leaves under control conditions, the K+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis P RIL,F8 SSRW92_180 NA NA 0 0 NA 0 0 5.99 9.62 10.1007/s00122-008-0720-8 NA NA t4081.T000301 lkc1.1 4 K+ concentrations in leaves under control conditions, the K+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis P RIL,F8 SSRW92_180 NA NA 0 0 NA 0 0 5.99 9.62 10.1007/s00122-008-0720-8 NA NA t4081.T000302 lkc7.1 1 K+ concentrations in leaves under salinity conditions, the K+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis P RIL,F8 SSRW19_760 NA NA 0 0 NA 0 0 39.49 18.61 10.1007/s00122-008-0720-8 NA NA t4081.T000302 lkc7.1 4 K+ concentrations in leaves under salinity conditions, the K+ concentrations (mmole per Kg of dry weight) in leaves QTL analysis P RIL,F8 SSRW19_760 NA NA 0 0 NA 0 0 39.49 18.61 10.1007/s00122-008-0720-8 NA NA t4081.T000303 lkn7.1 1 Square root ratio of K+/Na+ in leaves under salinity conditions QTL analysis P RIL,F8 SSRW26_500 NA NA 0 0 NA 0 0 45.67 57.98 10.1007/s00122-008-0720-8 NA NA t4081.T000303 lkn7.1 4 Square root ratio of K+/Na+ in leaves under salinity conditions QTL analysis P RIL,F8 SSRW26_500 NA NA 0 0 NA 0 0 45.67 57.98 10.1007/s00122-008-0720-8 NA NA t4081.T000304 lnc7.1 1 Logarithmic Na+ concentrations in leaves under salinity conditions, logarithmic LNC (the Na+ concentrations in leaves) QTL analysis P RIL,F8 SSR30_520 NA NA 0 0 NA 0 0 40.91 53.82 10.1007/s00122-008-0720-8 NA NA t4081.T000304 lnc7.1 4 Logarithmic Na+ concentrations in leaves under salinity conditions, logarithmic LNC (the Na+ concentrations in leaves) QTL analysis P RIL,F8 SSR30_520 NA NA 0 0 NA 0 0 40.91 53.82 10.1007/s00122-008-0720-8 NA NA t4081.T000305 nls7.1 1 Sodium leaf sensitivity under salinity conditions QTL analysis P RIL,F8 SSR30_520 NA NA 0 0 NA 0 0 40.01 14.13 10.1007/s00122-008-0720-8 NA NA t4081.T000305 nls7.1 4 Sodium leaf sensitivity under salinity conditions QTL analysis P RIL,F8 SSR30_520 NA NA 0 0 NA 0 0 40.01 14.13 10.1007/s00122-008-0720-8 NA NA t4081.T000306 skc5.1 1 K+ concentrations in stems under salinity conditions, the K+ concentrations (mmole per Kg of dry weight) in stems QTL analysis P RIL,F8 SSRW344_430 NA NA 0 0 NA 0 0 35.88 11.89 10.1007/s00122-008-0720-8 NA NA t4081.T000306 skc5.1 4 K+ concentrations in stems under salinity conditions, the K+ concentrations (mmole per Kg of dry weight) in stems QTL analysis P RIL,F8 SSRW344_430 NA NA 0 0 NA 0 0 35.88 11.89 10.1007/s00122-008-0720-8 NA NA t4081.T000307 skc7.1 1 K+ concentrations in stems under salinity conditions, the K+ concentrations (mmole per Kg of dry weight) in stems QTL analysis P RIL,F8 SSRW26_500 NA NA 0 0 NA 0 0 41.67 11.7 10.1007/s00122-008-0720-8 NA NA t4081.T000307 skc7.1 4 K+ concentrations in stems under salinity conditions, the K+ concentrations (mmole per Kg of dry weight) in stems QTL analysis P RIL,F8 SSRW26_500 NA NA 0 0 NA 0 0 41.67 11.7 10.1007/s00122-008-0720-8 NA NA t4081.T000308 snc3.1 1 Logarithmic Na+ concentrations in stems under saliniy conditions, logarithmic SNC (the Na+ concentrations in stems) QTL analysis P RIL,F8 CT167_340 NA NA 0 0 NA 0 0 11.91 10 10.1007/s00122-008-0720-8 NA NA t4081.T000308 snc3.1 4 Logarithmic Na+ concentrations in stems under saliniy conditions, logarithmic SNC (the Na+ concentrations in stems) QTL analysis P RIL,F8 CT167_340 NA NA 0 0 NA 0 0 11.91 10 10.1007/s00122-008-0720-8 NA NA t4081.T000309 snc6.1 1 Logarithmic Na+ concentrations in stems under saliniy conditions, logarithmic SNC (the Na+ concentrations in stems) QTL analysis P RIL,F8 CT167_800 NA NA 0 0 NA 0 0 21.67 9.44 10.1007/s00122-008-0720-8 NA NA t4081.T000309 snc6.1 4 Logarithmic Na+ concentrations in stems under saliniy conditions, logarithmic SNC (the Na+ concentrations in stems) QTL analysis P RIL,F8 CT167_800 NA NA 0 0 NA 0 0 21.67 9.44 10.1007/s00122-008-0720-8 NA NA t4081.T000310 snc7.1 1 Logarithmic Na+ concentrations in stems under saliniy conditions, logarithmic SNC (the Na+ concentrations in stems) QTL analysis P RIL,F8 SSRW26_500 NA NA 0 0 NA 0 0 41.67 47.72 10.1007/s00122-008-0720-8 NA NA t4081.T000310 snc7.1 4 Logarithmic Na+ concentrations in stems under saliniy conditions, logarithmic SNC (the Na+ concentrations in stems) QTL analysis P RIL,F8 SSRW26_500 NA NA 0 0 NA 0 0 41.67 47.72 10.1007/s00122-008-0720-8 NA NA t4081.T000311 tn5.1 1 Na+ content in the aerial part of plant under salinity conditions QTL analysis P RIL,F8 S_440 NA NA 0 0 NA 0 0 38.01 9.84 10.1007/s00122-008-0720-8 NA NA t4081.T000311 tn5.1 4 Na+ content in the aerial part of plant under salinity conditions QTL analysis P RIL,F8 S_440 NA NA 0 0 NA 0 0 38.01 9.84 10.1007/s00122-008-0720-8 NA NA t4081.T000312 tn7.1 1 Na+ content in the aerial part of plant under salinity conditions QTL analysis P RIL,F8 SSR30_520 NA NA 0 0 NA 0 0 40.01 36.8 10.1007/s00122-008-0720-8 NA NA t4081.T000312 tn7.1 4 Na+ content in the aerial part of plant under salinity conditions QTL analysis P RIL,F8 SSR30_520 NA NA 0 0 NA 0 0 40.01 36.8 10.1007/s00122-008-0720-8 NA NA t4081.T000313 acds3.1/PM 5 Total acids, The sum of citric, malic and glutamic acid QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 CT82 NA NA 0 0 NA 0 0 56 10.1023/A:1020209930031 NA NA t4081.T000314 acds8.1/PM 5 Total acids, The sum of citric, malic and glutamic acid QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 CT265 SL3.0 SL3.0ch08 63798500 63799458 NA 0 0 79 10.1023/A:1020209930031 t4081.M024822.1 NA t4081.T000315 brx2.1/PM 5 Soluble solids content, Soluble solids content (brix) QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG469 NA NA 0 0 NA 0 0 70 10.1023/A:1020209930031 NA NA t4081.T000316 brx3.1/PM 5 Soluble solids content, Soluble solids content (brix) QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG246 NA NA 0 0 NA 0 0 67 10.1023/A:1020209930031 NA NA t4081.T000317 brx4.1/PM 5 Soluble solids content, Soluble solids content (brix) QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 CT157 NA NA 0 0 NA 0 0 38 10.1023/A:1020209930031 NA NA t4081.T000318 brx6.1/PM 5 Soluble solids content, Soluble solids content (brix) QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG365 NA NA 0 0 NA 0 0 42 10.1023/A:1020209930031 NA NA t4081.T000319 brx7.1/PM 5 Soluble solids content, Soluble solids content (brix) QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG342 NA NA 0 0 NA 0 0 0 10.1023/A:1020209930031 NA NA t4081.T000320 brx8.1/PM 5 Soluble solids content, Soluble solids content (brix) QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG176 NA NA 0 0 NA 0 0 0 10.1023/A:1020209930031 t4081.M021335.1 NA t4081.T000321 ca1.1/PM 5 Citric acid content QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG125 NA NA 0 0 NA 0 0 18 10.1023/A:1020209930031 NA NA t4081.T000322 ca3.1/PM 5 Citric acid content QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 CT82 NA NA 0 0 NA 0 0 56 10.1023/A:1020209930031 NA NA t4081.T000323 ca8.1/PM 5 Citric acid content QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 CT265 SL3.0 SL3.0ch08 63798500 63799458 NA 0 0 79 10.1023/A:1020209930031 t4081.M024822.1 NA t4081.T000324 ga2.1/PM 5 Glutamic acid content QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG154 NA NA 0 0 NA 0 0 124 10.1023/A:1020209930031 NA NA t4081.T000325 ga3.1/PM 5 Glutamic acid content QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 CT82 NA NA 0 0 NA 0 0 56 10.1023/A:1020209930031 NA NA t4081.T000326 ga8.1/PM 5 Glutamic acid content QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 CT265 SL3.0 SL3.0ch08 63798500 63799458 NA 0 0 79 10.1023/A:1020209930031 t4081.M024822.1 NA t4081.T000327 glu11.1/PM 5 Glucose content QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG147 NA NA 0 0 NA 0 0 39 10.1023/A:1020209930031 NA NA t4081.T000328 inv3.1/PM 5 Invertase QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG129 NA NA 0 0 NA 0 0 60 10.1023/A:1020209930031 NA NA t4081.T000329 ma1.1/PM 5 Malic acid content QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG301 SL3.0 SL3.0ch01 843782 844614 NA 0 0 7 10.1023/A:1020209930031 t4081.M021273.1 NA t4081.T000330 ma11.1/PM 5 Malic acid content QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG36 NA NA 0 0 NA 0 0 74 10.1023/A:1020209930031 NA NA t4081.T000331 ma3.1/PM 5 Malic acid content QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG214 NA NA 0 0 NA 0 0 115 10.1023/A:1020209930031 NA NA t4081.T000332 ma5.1/PM 5 Malic acid content QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 OPAI-2 NA NA 0 0 NA 0 0 51 10.1023/A:1020209930031 NA NA t4081.T000333 ma5.2/PM 5 Malic acid content QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG185 NA NA 0 0 NA 0 0 98 10.1023/A:1020209930031 NA NA t4081.T000334 ma7.1/PM 5 Malic acid content QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG128 SL3.0 SL3.0ch07 62688853 62689295 NA 0 0 51 10.1023/A:1020209930031 t4081.M021364.1 NA t4081.T000335 pH1.1/PM 5 Fruit pH QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG273 NA NA 0 0 NA 0 0 36 10.1023/A:1020209930031 NA NA t4081.T000336 pH1.2/PM 5 Fruit pH QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG245 NA NA 0 0 NA 0 0 98 10.1023/A:1020209930031 NA NA t4081.T000337 pH10.1/PM 5 Fruit pH QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 CT11 NA NA 0 0 NA 0 0 34 10.1023/A:1020209930031 NA NA t4081.T000338 pH11.1/PM 5 Fruit pH QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG36 NA NA 0 0 NA 0 0 74 10.1023/A:1020209930031 NA NA t4081.T000339 pH6.1/PM 5 Fruit pH QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG356 NA NA 0 0 NA 0 0 38 10.1023/A:1020209930031 NA NA t4081.T000340 pH7.1/PM 5 Fruit pH QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 CD57 NA NA 0 0 NA 0 0 25 10.1023/A:1020209930031 NA NA t4081.T000341 pH9.1/PM 5 Fruit pH QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG291 NA NA 0 0 NA 0 0 53 10.1023/A:1020209930031 NA NA t4081.T000342 s/ga2.1/PM 5 Ratio of sugars to glutamic acid, Ratio of total sugars to glutamic acid (sugars/glutamic acid) QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG308 NA NA 0 0 NA 0 0 55 10.1023/A:1020209930031 NA NA t4081.T000343 s/ga2.2/PM 5 Ratio of sugars to glutamic acid, Ratio of total sugars to glutamic acid (sugars/glutamic acid) QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG151 NA NA 0 0 NA 0 0 110 10.1023/A:1020209930031 NA NA t4081.T000344 s/ga5.1/PM 5 Ratio of sugars to glutamic acid, Ratio of total sugars to glutamic acid (sugars/glutamic acid) QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 CT101 NA NA 0 0 NA 0 0 1 10.1023/A:1020209930031 NA NA t4081.T000345 s/ga8.1/PM 5 Ratio of sugars to glutamic acid, Ratio of total sugars to glutamic acid (sugars/glutamic acid) QTL analysis PM (Solanum pimpinellifolium (LA1589) x Solanum esculentum M82) BC2 TG330 NA NA 0 0 NA 0 0 52 10.1023/A:1020209930031 NA NA t4081.T000346 acds11.1/PR 5 Total acids, The sum of citric, malic and glutamic acid QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG30 NA NA 0 0 NA 0 0 82 10.1023/A:1020209930031 NA NA t4081.T000347 acds12.1/PR 5 Total acids, The sum of citric, malic and glutamic acid QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 CT219 NA NA 0 0 NA 0 0 38 10.1023/A:1020209930031 NA NA t4081.T000348 acds4.1/PR 5 Total acids, The sum of citric, malic and glutamic acid QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG427 NA NA 0 0 NA 0 0 68 10.1023/A:1020209930031 NA NA t4081.T000349 acds7.1/PR 5 Total acids, The sum of citric, malic and glutamic acid QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG216 NA NA 0 0 NA 0 0 64 10.1023/A:1020209930031 NA NA t4081.T000350 acds9.1/PR 5 Total acids, The sum of citric, malic and glutamic acid QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 CD32A NA NA 0 0 NA 0 0 45 10.1023/A:1020209930031 NA NA t4081.T000351 brx4.1/PR 5 Soluble solids content, Soluble solids content (brix) QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG464 NA NA 0 0 NA 0 0 125 10.1023/A:1020209930031 NA NA t4081.T000352 brx6.1/PR 5 Soluble solids content, Soluble solids content (brix) QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG352 SL3.0 SL3.0ch06 40564600 40564825 NA 0 0 25 10.1023/A:1020209930031 t4081.M021383.1 NA t4081.T000353 brx8.1/PR 5 Soluble solids content, Soluble solids content (brix) QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 CT148 SL3.0 SL3.0ch08 63396342 63397171 NA 0 0 75 10.1023/A:1020209930031 t4081.M024823.1 NA t4081.T000354 ca1.1/PR 5 Citric acid content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG301 SL3.0 SL3.0ch01 843782 844614 NA 0 0 7 10.1023/A:1020209930031 t4081.M021273.1 NA t4081.T000355 ca1.2/PR 5 Citric acid content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG245 NA NA 0 0 NA 0 0 98 10.1023/A:1020209930031 NA NA t4081.T000356 ca11.1/PR 5 Citric acid content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG30 NA NA 0 0 NA 0 0 82 10.1023/A:1020209930031 NA NA t4081.T000357 ca12.1/PR 5 Citric acid content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG68 SL3.0 SL3.0ch12 1175541 1175967 NA 0 0 14 10.1023/A:1020209930031 t4081.M021344.1 NA t4081.T000358 ca2.1/PR 5 Citric acid content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG451 NA NA 0 0 NA 0 0 46 10.1023/A:1020209930031 NA NA t4081.T000359 ca9.1/PR 5 Citric acid content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 CD32A NA NA 0 0 NA 0 0 45 10.1023/A:1020209930031 NA NA t4081.T000360 fru/glu10.1/PR 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG230 NA NA 0 0 NA 0 0 0 10.1023/A:1020209930031 NA NA t4081.T000361 fru/glu2.1/PR 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG290 NA NA 0 0 NA 0 0 41 10.1023/A:1020209930031 NA NA t4081.T000362 fru/glu2.2/PR 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG34 NA NA 0 0 NA 0 0 97 10.1023/A:1020209930031 NA NA t4081.T000363 fru/glu4.1/PR 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG464 NA NA 0 0 NA 0 0 125 10.1023/A:1020209930031 NA NA t4081.T000364 fru/glu6.1/PR 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG482 NA NA 0 0 NA 0 0 98 10.1023/A:1020209930031 NA NA t4081.T000365 fru/glu7.1/PR 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG572 NA NA 0 0 NA 0 0 50 10.1023/A:1020209930031 t4081.M024872.1 NA t4081.T000366 fru/glu8.1/PR 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 CT47 NA NA 0 0 NA 0 0 16 10.1023/A:1020209930031 NA NA t4081.T000367 fru/glu9.1/PR 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG254 SL3.0 SL3.0ch09 834647 835020 NA 0 0 9 10.1023/A:1020209930031 t4081.M021528.1 NA t4081.T000368 fru4.1/PR 5 Fructose content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG464 NA NA 0 0 NA 0 0 125 10.1023/A:1020209930031 NA NA t4081.T000369 fru6.1/PR 5 Fructose content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG352 SL3.0 SL3.0ch06 40564600 40564825 NA 0 0 25 10.1023/A:1020209930031 t4081.M021383.1 NA t4081.T000370 fru9.1/PR 5 Fructose content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG10 SL3.0 SL3.0ch09 2888432 2889030 NA 0 0 34 10.1023/A:1020209930031 t4081.M021355.1 NA t4081.T000371 ga10.1/PR 5 Glutamic acid content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 CT112B NA NA 0 0 NA 0 0 43 10.1023/A:1020209930031 NA NA t4081.T000372 ga12.1/PR 5 Glutamic acid content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG565 SL3.0 SL3.0ch12 60286354 60286727 NA 0 0 54 10.1023/A:1020209930031 t4081.M021345.1 NA t4081.T000373 ga2.1/PR 5 Glutamic acid content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 CT255A NA NA 0 0 NA 0 0 28 10.1023/A:1020209930031 NA NA t4081.T000374 ga4.1/PR 5 Glutamic acid content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG427 NA NA 0 0 NA 0 0 68 10.1023/A:1020209930031 NA NA t4081.T000375 ga7.1/PR 5 Glutamic acid content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG217 NA NA 0 0 NA 0 0 52 10.1023/A:1020209930031 t4081.M021366.1 NA t4081.T000376 glu4.1/PR 5 Glucose content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG464 NA NA 0 0 NA 0 0 125 10.1023/A:1020209930031 NA NA t4081.T000377 glu9.1/PR 5 Glucose content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG10 SL3.0 SL3.0ch09 2888432 2889030 NA 0 0 34 10.1023/A:1020209930031 t4081.M021355.1 NA t4081.T000378 ma1.1/PR 5 Malic acid content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 CT267 NA NA 0 0 NA 0 0 87 10.1023/A:1020209930031 NA NA t4081.T000379 ma10.1/PR 5 Malic acid content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 CD32B NA NA 0 0 NA 0 0 90 10.1023/A:1020209930031 NA NA t4081.T000380 ma9.1/PR 5 Malic acid content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 CD32A NA NA 0 0 NA 0 0 45 10.1023/A:1020209930031 NA NA t4081.T000381 pH10.1/PR 5 Fruit pH QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 CT42 NA NA 0 0 NA 0 0 43 10.1023/A:1020209930031 NA NA t4081.T000382 pH12.1/PR 5 Fruit pH QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 CT156A NA NA 0 0 NA 0 0 72 10.1023/A:1020209930031 NA NA t4081.T000383 pH3.1/PR 5 Fruit pH QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG214 NA NA 0 0 NA 0 0 115 10.1023/A:1020209930031 NA NA t4081.T000384 pH4.1/PR 5 Fruit pH QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 GP180A NA NA 0 0 NA 0 0 0 10.1023/A:1020209930031 NA NA t4081.T000385 pH4.2/PR 5 Fruit pH QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG427 NA NA 0 0 NA 0 0 68 10.1023/A:1020209930031 NA NA t4081.T000386 pH5.1/PR 5 Fruit pH QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 GP180B NA NA 0 0 NA 0 0 44 10.1023/A:1020209930031 NA NA t4081.T000387 pH6.1/PR 5 Fruit pH QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG477 NA NA 0 0 NA 0 0 75 10.1023/A:1020209930031 NA NA t4081.T000388 pH7.1/PR 5 Fruit pH QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG61 NA NA 0 0 NA 0 0 15 10.1023/A:1020209930031 NA NA t4081.T000389 pH9.1/PR 5 Fruit pH QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG9 NA NA 0 0 NA 0 0 18 10.1023/A:1020209930031 NA NA t4081.T000390 pH9.2/PR 5 Fruit pH QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG421 NA NA 0 0 NA 0 0 82 10.1023/A:1020209930031 NA NA t4081.T000391 s/ga4.1/PR 5 Ratio of sugars to glutamic acid, Ratio of total sugars to glutamic acid (sugars/glutamic acid) QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG427 NA NA 0 0 NA 0 0 68 10.1023/A:1020209930031 NA NA t4081.T000392 suc10.1/PR 5 Sucrose content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 CT42 NA NA 0 0 NA 0 0 43 10.1023/A:1020209930031 NA NA t4081.T000393 suc2.1/PR 5 Sucrose content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG290 NA NA 0 0 NA 0 0 41 10.1023/A:1020209930031 NA NA t4081.T000394 suc4.1/PR 5 Sucrose content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 CT145B NA NA 0 0 NA 0 0 49 10.1023/A:1020209930031 NA NA t4081.T000395 suc6.1/PR 5 Sucrose content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG352 SL3.0 SL3.0ch06 40564600 40564825 NA 0 0 25 10.1023/A:1020209930031 t4081.M021383.1 NA t4081.T000396 sugs4.1/PR 5 Total sugar content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG464 NA NA 0 0 NA 0 0 125 10.1023/A:1020209930031 NA NA t4081.T000397 sugs6.1/PR 5 Total sugar content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG232 NA NA 0 0 NA 0 0 11 10.1023/A:1020209930031 NA NA t4081.T000398 sugs9.1/PR 5 Total sugar content QTL analysis PR (Solanum parviflorum (LA2133) x Solanum esculentum E6203) BC3 TG10 SL3.0 SL3.0ch09 2888432 2889030 NA 0 0 34 10.1023/A:1020209930031 t4081.M021355.1 NA t4081.T000399 acds1.1/PV 5 Total acids, The sum of citric, malic and glutamic acid QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG375 NA NA 0 0 NA 0 0 107 10.1023/A:1020209930031 NA NA t4081.T000400 acds12.1/PV 5 Total acids, The sum of citric, malic and glutamic acid QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG68 SL3.0 SL3.0ch12 1175541 1175967 NA 0 0 14 10.1023/A:1020209930031 t4081.M021344.1 NA t4081.T000401 acds2.1/PV 5 Total acids, The sum of citric, malic and glutamic acid QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT251 NA NA 0 0 NA 0 0 7 10.1023/A:1020209930031 NA NA t4081.T000402 acds5.1/PV 5 Total acids, The sum of citric, malic and glutamic acid QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG358 NA NA 0 0 NA 0 0 54 10.1023/A:1020209930031 NA NA t4081.T000403 acds6.1/PV 5 Total acids, The sum of citric, malic and glutamic acid QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG482 NA NA 0 0 NA 0 0 98 10.1023/A:1020209930031 NA NA t4081.T000404 acds7.1/PV 5 Total acids, The sum of citric, malic and glutamic acid QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG216 NA NA 0 0 NA 0 0 64 10.1023/A:1020209930031 NA NA t4081.T000405 acds8.1/PV 5 Total acids, The sum of citric, malic and glutamic acid QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT111 NA NA 0 0 NA 0 0 65 10.1023/A:1020209930031 NA NA t4081.T000406 acds9.1/PV 5 Total acids, The sum of citric, malic and glutamic acid QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG424 NA NA 0 0 NA 0 0 87 10.1023/A:1020209930031 NA NA t4081.T000407 brx1.1/PV 5 Soluble solids content, Soluble solids content (brix) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG27 NA NA 0 0 NA 0 0 133 10.1023/A:1020209930031 NA NA t4081.T000408 brx10.1/PV 5 Soluble solids content, Soluble solids content (brix) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG420 NA NA 0 0 NA 0 0 52 10.1023/A:1020209930031 NA NA t4081.T000409 brx10.2/PV 5 Soluble solids content, Soluble solids content (brix) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CD5 NA NA 0 0 NA 0 0 87 10.1023/A:1020209930031 NA NA t4081.T000410 brx12.1/PV 5 Soluble solids content, Soluble solids content (brix) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT219 NA NA 0 0 NA 0 0 38 10.1023/A:1020209930031 NA NA t4081.T000411 brx2.1/PV 5 Soluble solids content, Soluble solids content (brix) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT9 NA NA 0 0 NA 0 0 88 10.1023/A:1020209930031 NA NA t4081.T000412 brx2.2/PV 5 Soluble solids content, Soluble solids content (brix) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG507 NA NA 0 0 NA 0 0 124 10.1023/A:1020209930031 NA NA t4081.T000413 brx3.1/PV 5 Soluble solids content, Soluble solids content (brix) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG324 NA NA 0 0 NA 0 0 0 10.1023/A:1020209930031 t4081.M024740.1 NA t4081.T000414 brx7.1/PV 5 Soluble solids content, Soluble solids content (brix) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG61 NA NA 0 0 NA 0 0 15 10.1023/A:1020209930031 NA NA t4081.T000415 brx8.1/PV 5 Soluble solids content, Soluble solids content (brix) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT92 SL3.0 SL3.0ch08 53292514 53293196 NA 0 0 17 10.1023/A:1020209930031 t4081.M021336.1 NA t4081.T000416 brx9.1/PV 5 Soluble solids content, Soluble solids content (brix) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG254 SL3.0 SL3.0ch09 834647 835020 NA 0 0 9 10.1023/A:1020209930031 t4081.M021528.1 NA t4081.T000417 brx9.2/PV 5 Soluble solids content, Soluble solids content (brix) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CD32 NA NA 0 0 NA 0 0 45 10.1023/A:1020209930031 NA NA t4081.T000418 ca2.1/PV 5 Citric acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG361 SL3.0 SL3.0ch02 53341938 53342489 NA 0 0 106 10.1023/A:1020209930031 t4081.M024846.1 NA t4081.T000419 ca3.1/PV 5 Citric acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG411 NA NA 0 0 NA 0 0 107 10.1023/A:1020209930031 NA NA t4081.T000420 ca5.1/PV 5 Citric acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG432 SL3.0 SL3.0ch05 2161747 2161927 NA 0 0 13 10.1023/A:1020209930031 t4081.M024759.1 NA t4081.T000421 fru/glu1.1/PV 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG27 NA NA 0 0 NA 0 0 133 10.1023/A:1020209930031 NA NA t4081.T000422 fru/glu12.1/PV 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG618 NA NA 0 0 NA 0 0 41 10.1023/A:1020209930031 NA NA t4081.T000423 fru/glu9.1/PV 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT143 NA NA 0 0 NA 0 0 22 10.1023/A:1020209930031 NA NA t4081.T000424 fru/glu9.2/PV 5 Ratio of fructose to glucose, Ratio of fructose to glucose (Fructose/glucose) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CD32A NA NA 0 0 NA 0 0 45 10.1023/A:1020209930031 NA NA t4081.T000425 fru1.1/PV 5 Fructose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG580 NA NA 0 0 NA 0 0 131 10.1023/A:1020209930031 NA NA t4081.T000426 fru10.1/PV 5 Fructose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG540 NA NA 0 0 NA 0 0 16 10.1023/A:1020209930031 NA NA t4081.T000427 fru10.2/PV 5 Fructose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG420 NA NA 0 0 NA 0 0 52 10.1023/A:1020209930031 NA NA t4081.T000428 fru10.3/PV 5 Fructose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CD5 NA NA 0 0 NA 0 0 87 10.1023/A:1020209930031 NA NA t4081.T000429 fru12.1/PV 5 Fructose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG360 NA NA 0 0 NA 0 0 40 10.1023/A:1020209930031 NA NA t4081.T000430 fru2.1/PV 5 Fructose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG353 NA NA 0 0 NA 0 0 62 10.1023/A:1020209930031 NA NA t4081.T000431 fru2.2/PV 5 Fructose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT9 NA NA 0 0 NA 0 0 88 10.1023/A:1020209930031 NA NA t4081.T000432 fru2.3/PV 5 Fructose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG507 NA NA 0 0 NA 0 0 124 10.1023/A:1020209930031 NA NA t4081.T000433 fru3.1/PV 5 Fructose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG324 NA NA 0 0 NA 0 0 0 10.1023/A:1020209930031 t4081.M024740.1 NA t4081.T000434 fru3.2/PV 5 Fructose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG377 NA NA 0 0 NA 0 0 96 10.1023/A:1020209930031 NA NA t4081.T000435 fru6.1/PV 5 Fructose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT206 NA NA 0 0 NA 0 0 83 10.1023/A:1020209930031 NA NA t4081.T000436 fru7.1/PV 5 Fructose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG61 NA NA 0 0 NA 0 0 15 10.1023/A:1020209930031 NA NA t4081.T000437 fru8.1/PV 5 Fructose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT92 SL3.0 SL3.0ch08 53292514 53293196 NA 0 0 17 10.1023/A:1020209930031 t4081.M021336.1 NA t4081.T000438 fru9.1/PV 5 Fructose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG254 SL3.0 SL3.0ch09 834647 835020 NA 0 0 9 10.1023/A:1020209930031 t4081.M021528.1 NA t4081.T000439 fru9.2/PV 5 Fructose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CD32A NA NA 0 0 NA 0 0 45 10.1023/A:1020209930031 NA NA t4081.T000440 ga1.1/PV 5 Glutamic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG375 NA NA 0 0 NA 0 0 107 10.1023/A:1020209930031 NA NA t4081.T000441 ga12.1/PV 5 Glutamic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG68 SL3.0 SL3.0ch12 1175541 1175967 NA 0 0 14 10.1023/A:1020209930031 t4081.M021344.1 NA t4081.T000442 ga2.1/PV 5 Glutamic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT251 NA NA 0 0 NA 0 0 7 10.1023/A:1020209930031 NA NA t4081.T000443 ga3.1/PV 5 Glutamic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG244 NA NA 0 0 NA 0 0 126 10.1023/A:1020209930031 NA NA t4081.T000444 ga5.1/PV 5 Glutamic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG363 NA NA 0 0 NA 0 0 43 10.1023/A:1020209930031 NA NA t4081.T000445 ga6.1/PV 5 Glutamic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG482 NA NA 0 0 NA 0 0 98 10.1023/A:1020209930031 NA NA t4081.T000446 ga7.1/PV 5 Glutamic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG61 NA NA 0 0 NA 0 0 15 10.1023/A:1020209930031 NA NA t4081.T000447 ga7.2/PV 5 Glutamic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG216 NA NA 0 0 NA 0 0 64 10.1023/A:1020209930031 NA NA t4081.T000448 ga8.1/PV 5 Glutamic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT148 SL3.0 SL3.0ch08 63396342 63397171 NA 0 0 75 10.1023/A:1020209930031 t4081.M024823.1 NA t4081.T000449 ga9.1/PV 5 Glutamic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG424 NA NA 0 0 NA 0 0 87 10.1023/A:1020209930031 NA NA t4081.T000450 glu1.1/PV 5 Glucose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG580 NA NA 0 0 NA 0 0 131 10.1023/A:1020209930031 NA NA t4081.T000451 glu10.1/PV 5 Glucose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG540 NA NA 0 0 NA 0 0 16 10.1023/A:1020209930031 NA NA t4081.T000452 glu10.2/PV 5 Glucose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG420 NA NA 0 0 NA 0 0 52 10.1023/A:1020209930031 NA NA t4081.T000453 glu10.3/PV 5 Glucose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CD5 NA NA 0 0 NA 0 0 87 10.1023/A:1020209930031 NA NA t4081.T000454 glu12.1/PV 5 Glucose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG360 NA NA 0 0 NA 0 0 40 10.1023/A:1020209930031 NA NA t4081.T000455 glu2.1/PV 5 Glucose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG353 NA NA 0 0 NA 0 0 62 10.1023/A:1020209930031 NA NA t4081.T000456 glu2.2/PV 5 Glucose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT9 NA NA 0 0 NA 0 0 88 10.1023/A:1020209930031 NA NA t4081.T000457 glu2.3/PV 5 Glucose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG507 NA NA 0 0 NA 0 0 124 10.1023/A:1020209930031 NA NA t4081.T000458 glu3.1/PV 5 Glucose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG324 NA NA 0 0 NA 0 0 0 10.1023/A:1020209930031 t4081.M024740.1 NA t4081.T000459 glu3.2/PV 5 Glucose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG377 NA NA 0 0 NA 0 0 96 10.1023/A:1020209930031 NA NA t4081.T000460 glu6.1/PV 5 Glucose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT206 NA NA 0 0 NA 0 0 83 10.1023/A:1020209930031 NA NA t4081.T000461 glu7.1/PV 5 Glucose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG143 SL3.0 SL3.0ch07 59621970 59622880 NA 0 0 40 10.1023/A:1020209930031 t4081.M021358.1 NA t4081.T000462 glu8.1/PV 5 Glucose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT92 SL3.0 SL3.0ch08 53292514 53293196 NA 0 0 17 10.1023/A:1020209930031 t4081.M021336.1 NA t4081.T000463 glu9.1/PV 5 Glucose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT143 NA NA 0 0 NA 0 0 22 10.1023/A:1020209930031 NA NA t4081.T000464 glu9.2/PV 5 Glucose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CD32A NA NA 0 0 NA 0 0 45 10.1023/A:1020209930031 NA NA t4081.T000465 ma1.1/PV 5 Malic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG59 SL3.0 SL3.0ch01 85073046 85073362 NA 0 0 51 10.1023/A:1020209930031 t4081.M021307.1 NA t4081.T000466 ma2.1/PV 5 Malic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG290 NA NA 0 0 NA 0 0 41 10.1023/A:1020209930031 NA NA t4081.T000467 ma3.1/PV 5 Malic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG377 NA NA 0 0 NA 0 0 96 10.1023/A:1020209930031 NA NA t4081.T000468 ma5.1/PV 5 Malic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG432 SL3.0 SL3.0ch05 2161747 2161927 NA 0 0 13 10.1023/A:1020209930031 t4081.M024759.1 NA t4081.T000469 ma7.1/PV 5 Malic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG452 NA NA 0 0 NA 0 0 25 10.1023/A:1020209930031 NA NA t4081.T000470 ma7.2/PV 5 Malic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG499 NA NA 0 0 NA 0 0 93 10.1023/A:1020209930031 NA NA t4081.T000471 ma8.1/PV 5 Malic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT64 SL3.0 SL3.0ch08 60551154 60551438 NA 0 0 49 10.1023/A:1020209930031 t4081.M021337.1 NA t4081.T000472 ma9.1/PV 5 Malic acid content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG551 SL3.0 SL3.0ch09 66583192 66583504 NA 0 0 60 10.1023/A:1020209930031 t4081.M021357.1 NA t4081.T000473 pH10.1/PV 5 Fruit pH QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT112B NA NA 0 0 NA 0 0 43 10.1023/A:1020209930031 NA NA t4081.T000474 pH5.1/PV 5 Fruit pH QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT101 NA NA 0 0 NA 0 0 1 10.1023/A:1020209930031 NA NA t4081.T000475 pH9.1/PV 5 Fruit pH QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 GP39 NA NA 0 0 NA 0 0 0 10.1023/A:1020209930031 NA NA t4081.T000476 s/ga 2.1/PV 5 Ratio of sugars to glutamic acid, Ratio of total sugars to glutamic acid (sugars/glutamic acid) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT251 NA NA 0 0 NA 0 0 7 10.1023/A:1020209930031 NA NA t4081.T000477 s/ga1.1/PV 5 Ratio of sugars to glutamic acid, Ratio of total sugars to glutamic acid (sugars/glutamic acid) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG375 NA NA 0 0 NA 0 0 107 10.1023/A:1020209930031 NA NA t4081.T000478 s/ga10.1/PV 5 Ratio of sugars to glutamic acid, Ratio of total sugars to glutamic acid (sugars/glutamic acid) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT112B NA NA 0 0 NA 0 0 43 10.1023/A:1020209930031 NA NA t4081.T000479 s/ga2.2/PV 5 Ratio of sugars to glutamic acid, Ratio of total sugars to glutamic acid (sugars/glutamic acid) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT169 NA NA 0 0 NA 0 0 154 10.1023/A:1020209930031 NA NA t4081.T000480 s/ga7.1/PV 5 Ratio of sugars to glutamic acid, Ratio of total sugars to glutamic acid (sugars/glutamic acid) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG216 NA NA 0 0 NA 0 0 64 10.1023/A:1020209930031 NA NA t4081.T000481 s/ga8.1/PV 5 Ratio of sugars to glutamic acid, Ratio of total sugars to glutamic acid (sugars/glutamic acid) QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT88 NA NA 0 0 NA 0 0 47 10.1023/A:1020209930031 NA NA t4081.T000482 suc2.1/PV 5 Sucrose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG353 NA NA 0 0 NA 0 0 62 10.1023/A:1020209930031 NA NA t4081.T000483 suc2.2/PV 5 Sucrose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG507 NA NA 0 0 NA 0 0 124 10.1023/A:1020209930031 NA NA t4081.T000484 suc8.1/PV 5 Sucrose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT64 SL3.0 SL3.0ch08 60551154 60551438 NA 0 0 49 10.1023/A:1020209930031 t4081.M021337.1 NA t4081.T000485 suc9.1/PV 5 Sucrose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT143 NA NA 0 0 NA 0 0 22 10.1023/A:1020209930031 NA NA t4081.T000486 suc9.2/PV 5 Sucrose content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG404 NA NA 0 0 NA 0 0 63 10.1023/A:1020209930031 NA NA t4081.T000487 sugs1.1/PV 5 Total sugar content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG580 NA NA 0 0 NA 0 0 131 10.1023/A:1020209930031 NA NA t4081.T000488 sugs10.1/PV 5 Total sugar content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG540 NA NA 0 0 NA 0 0 16 10.1023/A:1020209930031 NA NA t4081.T000489 sugs10.2/PV 5 Total sugar content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG420 NA NA 0 0 NA 0 0 52 10.1023/A:1020209930031 NA NA t4081.T000490 sugs10.3/PV 5 Total sugar content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CD5 NA NA 0 0 NA 0 0 87 10.1023/A:1020209930031 NA NA t4081.T000491 sugs12.1/PV 5 Total sugar content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG360 NA NA 0 0 NA 0 0 40 10.1023/A:1020209930031 NA NA t4081.T000492 sugs2.1/PV 5 Total sugar content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG353 NA NA 0 0 NA 0 0 62 10.1023/A:1020209930031 NA NA t4081.T000493 sugs2.2/PV 5 Total sugar content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT9 NA NA 0 0 NA 0 0 88 10.1023/A:1020209930031 NA NA t4081.T000494 sugs2.3/PV 5 Total sugar content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG507 NA NA 0 0 NA 0 0 124 10.1023/A:1020209930031 NA NA t4081.T000495 sugs3.1/PV 5 Total sugar content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG324 NA NA 0 0 NA 0 0 0 10.1023/A:1020209930031 t4081.M024740.1 NA t4081.T000496 sugs3.2/PV 5 Total sugar content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG377 NA NA 0 0 NA 0 0 96 10.1023/A:1020209930031 NA NA t4081.T000497 sugs6.1/PV 5 Total sugar content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT206 NA NA 0 0 NA 0 0 83 10.1023/A:1020209930031 NA NA t4081.T000498 sugs7.1/PV 5 Total sugar content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG61 NA NA 0 0 NA 0 0 15 10.1023/A:1020209930031 NA NA t4081.T000499 sugs8.1/PV 5 Total sugar content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CT92 SL3.0 SL3.0ch08 53292514 53293196 NA 0 0 17 10.1023/A:1020209930031 t4081.M021336.1 NA t4081.T000500 sugs9.1/PV 5 Total sugar content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 TG254 SL3.0 SL3.0ch09 834647 835020 NA 0 0 9 10.1023/A:1020209930031 t4081.M021528.1 NA t4081.T000501 sugs9.2/PV 5 Total sugar content QTL analysis PV (Solanum peruvianum (LA1708) x Solanum esculentum E6203) BC4 CD32A NA NA 0 0 NA 0 0 45 10.1023/A:1020209930031 NA NA t4081.T000502 dan2.1 4 Distal fruit end shape QTL analysis RGF2 (S. lycopersicum cv. Rio Grande x S. pimpinellifolium LA1589) F2 TG337 NA NA 0 0 NA 0 0 7.8 10.1007/s00122-007-0698-7 NA NA t4081.T000503 dan5.1 4 Distal fruit end shape QTL analysis RGF2 (S. lycopersicum cv. Rio Grande x S. pimpinellifolium LA1589) F2 LeOH73 NA NA 0 0 NA 0 0 5.3 10.1007/s00122-007-0698-7 NA NA t4081.T000504 dan8.1 4 Distal fruit end shape QTL analysis RGF2 (S. lycopersicum cv. Rio Grande x S. pimpinellifolium LA1589) F2 SSR327 NA NA 0 0 NA 0 0 7 10.1007/s00122-007-0698-7 NA NA t4081.T000505 dblk2.1 4 Distal fruit end shape QTL analysis RGF2 (S. lycopersicum cv. Rio Grande x S. pimpinellifolium LA1589) F2 TG337 NA NA 0 0 NA 0 0 9.1 10.1007/s00122-007-0698-7 NA NA t4081.T000506 dblk5.1 4 Distal fruit end shape QTL analysis RGF2 (S. lycopersicum cv. Rio Grande x S. pimpinellifolium LA1589) F2 LeOH73 NA NA 0 0 NA 0 0 6.4 10.1007/s00122-007-0698-7 NA NA t4081.T000507 dblk8.1 4 Distal fruit end shape QTL analysis RGF2 (S. lycopersicum cv. Rio Grande x S. pimpinellifolium LA1589) F2 SSR327 NA NA 0 0 NA 0 0 4.1 10.1007/s00122-007-0698-7 NA NA t4081.T000508 fs2.1 4 Fruit shape QTL analysis RGF2 (S. lycopersicum cv. Rio Grande x S. pimpinellifolium LA1589) F2 TG537 SL3.0 SL3.0ch02 51681005 51681449 NA 0 0 4.9 10.1007/s00122-007-0698-7 t4081.M021316.1 NA t4081.T000509 fs8.1 4 Fruit shape QTL analysis RGF2 (S. lycopersicum cv. Rio Grande x S. pimpinellifolium LA1589) F2 SSR327 NA NA 0 0 NA 0 0 6 10.1007/s00122-007-0698-7 NA NA t4081.T000510 hrt3.1 4 Fruit shape QTL analysis RGF2 (S. lycopersicum cv. Rio Grande x S. pimpinellifolium LA1589) F2 TG134 SL3.0 SL3.0ch03 66398315 66398780 NA 0 0 4.1 10.1007/s00122-007-0698-7 t4081.M021320.1 NA t4081.T000511 pan3.1 4 Proximal fruit end shape QTL analysis RGF2 (S. lycopersicum cv. Rio Grande x S. pimpinellifolium LA1589) F2 LeOH223 NA NA 0 0 NA 0 0 4.2 10.1007/s00122-007-0698-7 NA NA t4081.T000512 pan3.2 4 Proximal fruit end shape QTL analysis RGF2 (S. lycopersicum cv. Rio Grande x S. pimpinellifolium LA1589) F2 TG134 SL3.0 SL3.0ch03 66398315 66398780 NA 0 0 5.3 10.1007/s00122-007-0698-7 t4081.M021320.1 NA t4081.T000513 pblk11.1 4 Proximal fruit end shape QTL analysis RGF2 (S. lycopersicum cv. Rio Grande x S. pimpinellifolium LA1589) F2 CT55 SL3.0 SL3.0ch11 49296500 49296903 NA 0 0 4.2 10.1007/s00122-007-0698-7 t4081.M021625.1 NA t4081.T000514 pblk3.1 4 Proximal fruit end shape QTL analysis RGF2 (S. lycopersicum cv. Rio Grande x S. pimpinellifolium LA1589) F2 T0581 NA NA 0 0 NA 0 0 5.8 10.1007/s00122-007-0698-7 NA NA t4081.T000515 psh3.1 4 Proximal fruit end shape QTL analysis RGF2 (S. lycopersicum cv. Rio Grande x S. pimpinellifolium LA1589) F2 TG134 SL3.0 SL3.0ch03 66398315 66398780 NA 0 0 5.2 10.1007/s00122-007-0698-7 t4081.M021320.1 NA t4081.T000516 tri2.1 4 Fruit shape QTL analysis RGF2 (S. lycopersicum cv. Rio Grande x S. pimpinellifolium LA1589) F2 fw2.2 SL3.0 SL3.0ch02 52888653 52888803 NA 0 0 9 10.1007/s00122-007-0698-7 t4081.M024858.1 NA t4081.T000517 tri3.1 4 Fruit shape QTL analysis RGF2 (S. lycopersicum cv. Rio Grande x S. pimpinellifolium LA1589) F2 T0581 NA NA 0 0 NA 0 0 4.1 10.1007/s00122-007-0698-7 NA NA t4081.T000518 OVATE 4 Fruit shape, controlling the transition from round to pear-shaped fruit QTL analysis S. esculentum cv Yellow Pear, TA503 x S. pimpinellifolium LA1589 F2 TG645 NA NA 0 0 NA 0 0 19.8 10.1073/pnas.162485999 NA NA t4081.T000519 1 Cucumber mosaic virus resistance, Non-lethal cell response (NLR) to cucumber mosaicvirus (CMV)/D satRNA infection QTL analysis S. habrochaitis line-60 x S. lycopersicum L. Rutgers BC1 C2_At2g03510 NA NA 0 0 NA 0 0 32.6 34.57 10.1094/MPMI-01-12-0004 NA NA t4081.T000520 1 Cucumber mosaic virus resistance, Non-lethal cell response (NLR) to cucumber mosaicvirus (CMV)/D satRNA infection QTL analysis S. habrochaitis line-60 x S. lycopersicum L. Rutgers BC1 C2_At1g76150 NA NA 0 0 NA 0 0 53 22.5 10.1094/MPMI-01-12-0004 NA NA t4081.T000521 Rbcq1 1 Gray mold (Botrytis cinerea) resistance, lesion growth rate (LG) QTL analysis S. lycopersicum cv. Moneymaker x S. habrochaites LYC4 F2 P18M50-124h NA NA 0 0 NA 0 0 4.3 10.1007/s00122-006-0458-0 NA NA t4081.T000522 Rbcq2 1 Gray mold (Botrytis cinerea) resistance, disease incidence (DI) QTL analysis S. lycopersicum cv. Moneymaker x S. habrochaites LYC4 F2 P14M61-286e NA NA 0 0 NA 0 0 6.5 10.1007/s00122-006-0458-0 NA NA t4081.T000523 pQTL3-LG 1 Gray mold (Botrytis cinerea) resistance, lesion growth (LG) QTL analysis S. lycopersicum cv. Moneymaker x S. neorickii G1.1601 F2 TG599 NA NA 0 0 NA 0 0 10.1007/s10681-007-9460-0 t4081.M021347.1 NA t4081.T000524 pQTL4-DI 1 Gray mold (Botrytis cinerea) resistance, disease incidence (DI) QTL analysis S. lycopersicum cv. Moneymaker x S. neorickii G1.1601 F2 TG339 SL3.0 SL3.0ch04 4428479 4428914 NA 0 0 10.1007/s10681-007-9460-0 t4081.M021351.1 NA t4081.T000525 pQTL9-LG 1 Gray mold (Botrytis cinerea) resistance, lesion growth (LG) QTL analysis S. lycopersicum cv. Moneymaker x S. neorickii G1.1601 F2 TG551 SL3.0 SL3.0ch09 66583192 66583504 NA 0 0 10.1007/s10681-007-9460-0 t4081.M021357.1 NA t4081.T000526 1 Early blight resistance, RAUDPC (elative area under the disease progress curve) QTL analysis S. lycopersicum cv. Solentos x S. arcanum LA2157 F2:3 P14M60-276P NA NA 0 0 NA 0 0 138 4.07 10.1007/s00122-006-0442-8 NA NA t4081.T000527 1 Early blight resistance, RAUDPC (elative area under the disease progress curve) QTL analysis S. lycopersicum cv. Solentos x S. arcanum LA2157 F2:3 P14M51-146E NA NA 0 0 NA 0 0 78 8.99 10.1007/s00122-006-0442-8 NA NA t4081.T000528 1 Early blight resistance, RAUDPC (elative area under the disease progress curve) QTL analysis S. lycopersicum cv. Solentos x S. arcanum LA2157 F2:3 P14M51-055P NA NA 0 0 NA 0 0 58 6.14 10.1007/s00122-006-0442-8 NA NA t4081.T000529 1 Early blight resistance, RAUDPC (elative area under the disease progress curve) QTL analysis S. lycopersicum cv. Solentos x S. arcanum LA2157 F2:3 P11M48-266E NA NA 0 0 NA 0 0 29 6.26 10.1007/s00122-006-0442-8 NA NA t4081.T000530 1 Early blight resistance, RAULEC (relative area under the lesion expansion curve) QTL analysis S. lycopersicum cv. Solentos x S. arcanum LA2157 F2:3 P15M62-349P NA NA 0 0 NA 0 0 36 8.26 10.1007/s00122-006-0442-8 NA NA t4081.T000531 1 Early blight resistance, PStLI (percentage of stem lesion index) QTL analysis S. lycopersicum cv. Solentos x S. arcanum LA2157 F2:3 P14M50-072P NA NA 0 0 NA 0 0 33 17.48 10.1007/s00122-006-0442-8 NA NA t4081.T000532 dan2.1 4 Distal fruit end shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 TG645 NA NA 0 0 NA 0 0 14.1 10.1007/s00122-007-0698-7 NA NA t4081.T000533 dan2.2 4 Distal fruit end shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 TG14 NA NA 0 0 NA 0 0 10.6 10.1007/s00122-007-0698-7 NA NA t4081.T000534 dan8.1 4 Distal fruit end shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 SSR327 NA NA 0 0 NA 0 0 7 10.1007/s00122-007-0698-7 NA NA t4081.T000535 dblk11.1 4 Distal fruit end shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 TG36 NA NA 0 0 NA 0 0 6.5 10.1007/s00122-007-0698-7 NA NA t4081.T000536 dblk12.1 4 Distal fruit end shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 TG68 SL3.0 SL3.0ch12 1175541 1175967 NA 0 0 4.8 10.1007/s00122-007-0698-7 t4081.M021344.1 NA t4081.T000537 dblk2.1 4 Distal fruit end shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 TG645 NA NA 0 0 NA 0 0 6.7 10.1007/s00122-007-0698-7 NA NA t4081.T000538 fs2.1 4 Fruit shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 TG645 NA NA 0 0 NA 0 0 20 10.1007/s00122-007-0698-7 NA NA t4081.T000539 hrt1.1 4 Fruit shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 SSR316 NA NA 0 0 NA 0 0 4.9 10.1007/s00122-007-0698-7 NA NA t4081.T000540 hrt2.1 4 Fruit shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 TG645 NA NA 0 0 NA 0 0 7.8 10.1007/s00122-007-0698-7 NA NA t4081.T000541 pan1.1 4 Proximal fruit end shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 SSR316 NA NA 0 0 NA 0 0 4 10.1007/s00122-007-0698-7 NA NA t4081.T000542 pan12.1 4 Proximal fruit end shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 TG68 SL3.0 SL3.0ch12 1175541 1175967 NA 0 0 3.7 10.1007/s00122-007-0698-7 t4081.M021344.1 NA t4081.T000543 pan2.1 4 Proximal fruit end shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 TG645 NA NA 0 0 NA 0 0 4.2 10.1007/s00122-007-0698-7 NA NA t4081.T000544 pblk1.1 4 Proximal fruit end shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 TG125 NA NA 0 0 NA 0 0 3.8 10.1007/s00122-007-0698-7 NA NA t4081.T000545 pblk2.1 4 Proximal fruit end shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 TG645 NA NA 0 0 NA 0 0 16.4 10.1007/s00122-007-0698-7 NA NA t4081.T000546 piar1.1 4 Proximal fruit end shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 SSR316 NA NA 0 0 NA 0 0 4.7 10.1007/s00122-007-0698-7 NA NA t4081.T000547 piar2.1 4 Proximal fruit end shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 TG645 NA NA 0 0 NA 0 0 8.2 10.1007/s00122-007-0698-7 NA NA t4081.T000548 piar9.1 4 Proximal fruit end shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 TG291 NA NA 0 0 NA 0 0 4.5 10.1007/s00122-007-0698-7 NA NA t4081.T000549 psh1.1 4 Proximal fruit end shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 SSR316 NA NA 0 0 NA 0 0 5 10.1007/s00122-007-0698-7 NA NA t4081.T000550 psh2.1 4 Proximal fruit end shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 TG645 NA NA 0 0 NA 0 0 7.2 10.1007/s00122-007-0698-7 NA NA t4081.T000551 tri1.1 4 Fruit shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 SSR316 NA NA 0 0 NA 0 0 6.1 10.1007/s00122-007-0698-7 NA NA t4081.T000552 tri2.2 4 Fruit shape QTL analysis SAF2 (S. lycopersicum cv. Sausage x S. pimpinellifolium LA1589) F2 TG14 NA NA 0 0 NA 0 0 9.5 10.1007/s00122-007-0698-7 NA NA t4081.T000553 sov2 3 Fruit weight QTL analysis SM x GBL (09S97) F2 12EP178 NA NA 0 0 NA 0 0 10.1038/hdy.2013.45 t4081.M021849.1 NA t4081.T000554 cfc2.1 5 Fruit cracking, Concentric fruit cracking (CFC) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG48 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000555 cfc8.1 5 Fruit cracking, Concentric fruit cracking (CFC) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL CD40 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000556 cfc9.1 5 Fruit cracking, Concentric fruit cracking (CFC) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG551 SL3.0 SL3.0ch09 66583192 66583504 NA 0 0 10.1139/g02-091 t4081.M021357.1 NA t4081.T000557 curly11.1 4 Leaf curliness, Leaf curliness (CURLY) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG546 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000558 curly2.1 4 Leaf curliness, Leaf curliness (CURLY) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG492 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000559 curly3.1 4 Leaf curliness, Leaf curliness (CURLY) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL CT82 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000560 curly5.1 4 Leaf curliness, Leaf curliness (CURLY) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG23 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000561 curly6.1 4 Leaf curliness, Leaf curliness (CURLY) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG178 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000562 curly8.1 4 Leaf curliness, Leaf curliness (CURLY) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG302 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000563 curly9.1 4 Leaf curliness, Leaf curliness (CURLY) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG551 SL3.0 SL3.0ch09 66583192 66583504 NA 0 0 10.1139/g02-091 t4081.M021357.1 NA t4081.T000564 dfl3.1 4 Days to first flower, Days to first flower (DFL) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG388 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000565 dfl4.1 4 Days to first flower, Days to first flower (DFL) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL CT185 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000566 dfr1.1 4 Days to first ripe fruit, Days to first ripe fruit (DFR) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG465 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000567 dfr7.1 4 Days to first ripe fruit, Days to first ripe fruit (DFR) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG342 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000568 ec11.1 4 External fruit color, External fruit color (EC) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG546 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000569 ec3.1 4 External fruit color, External fruit color (EC) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG152 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000570 fd2.1 4 Fruit diameter, Fruit diameter (FD) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG167 NA NA 0 0 NA 0 0 10.1139/g02-091 t4081.M024845.1 NA t4081.T000571 fert4.1 2 Fertility, Fertility (FERT) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG574 SL3.0 SL3.0ch04 60945433 60945822 NA 0 0 10.1139/g02-091 t4081.M021325.1 NA t4081.T000572 fert5.1 2 Fertility, Fertility (FERT) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG185 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000573 fert7.1 2 Fertility, Fertility (FERT) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG342 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000574 firm10.1 5 Fruit firmness, Fruit firmness (FIRM) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG122 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000575 firm2.1 5 Fruit firmness, Fruit firmness (FIRM) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG14 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000576 fl11.1 4 Fruit length, Fruit length (FL) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG546 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000577 fl2.1 4 Fruit length, Fruit length (FL) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG492 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000578 fl3.1 4 Fruit length, Fruit length (FL) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG246 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000579 fl8.1 4 Fruit length, Fruit length (FL) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG45 SL3.0 SL3.0ch08 49340530 49340843 NA 0 0 10.1139/g02-091 t4081.M024849.1 NA t4081.T000580 fl9.1 4 Fruit length, Fruit length (FL) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG551 SL3.0 SL3.0ch09 66583192 66583504 NA 0 0 10.1139/g02-091 t4081.M021357.1 NA t4081.T000581 fs1.1 4 Fruit shape, Fruit shape (FS) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG460 SL3.0 SL3.0ch01 85968721 85969170 NA 0 0 10.1139/g02-091 t4081.M021308.1 NA t4081.T000582 fs9.1 4 Fruit shape, Fruit shape (FS) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL CT143 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000583 fw2.2 3 Fruit weight, Fruit weight (FW) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG167 NA NA 0 0 NA 0 0 10.1139/g02-091 t4081.M024845.1 NA t4081.T000584 fw3.1 3 Fruit weight, Fruit weight (FW) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG246 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000585 gro2.1 4 Plant growth habit, Plant growth habit (GRO) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL CT176 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000586 gro3.1 4 Plant growth habit, Plant growth habit (GRO) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL CD51 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000587 gro3.2 4 Plant growth habit, Plant growth habit (GRO) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG242 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000588 gro9.1 4 Plant growth habit, Plant growth habit (GRO) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL CT143 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000589 ic11.1 4 Internal fruit color, Internal fruit color (IC) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG546 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000589 ic11.1 5 Internal fruit color, Internal fruit color (IC) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG546 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000590 ic3.1 4 Internal fruit color, Internal fruit color (IC) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG66 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000590 ic3.1 5 Internal fruit color, Internal fruit color (IC) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG66 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000591 ic3.2 4 Internal fruit color, Internal fruit color (IC) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG152 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000591 ic3.2 5 Internal fruit color, Internal fruit color (IC) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG152 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000592 mat7.1 5 Maturity(MAT) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG342 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000593 nof1.1 3 Number of flowers, No. of flowers per inflorescence (NOF) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG125 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000593 nof1.1 4 Number of flowers, No. of flowers per inflorescence (NOF) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG125 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000594 nof10.1 3 Number of flowers, No. of flowers per inflorescence (NOF) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL u NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000594 nof10.1 4 Number of flowers, No. of flowers per inflorescence (NOF) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL u NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000595 nof11.1 3 Number of flowers, No. of flowers per inflorescence (NOF) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG57 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000595 nof11.1 4 Number of flowers, No. of flowers per inflorescence (NOF) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG57 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000596 nof7.1 3 Number of flowers, No. of flowers per inflorescence (NOF) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL CD62 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000596 nof7.1 4 Number of flowers, No. of flowers per inflorescence (NOF) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL CD62 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000597 nof9.1 3 Number of flowers, No. of flowers per inflorescence (NOF) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG254 SL3.0 SL3.0ch09 834647 835020 NA 0 0 10.1139/g02-091 t4081.M021528.1 NA t4081.T000597 nof9.1 4 Number of flowers, No. of flowers per inflorescence (NOF) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG254 SL3.0 SL3.0ch09 834647 835020 NA 0 0 10.1139/g02-091 t4081.M021528.1 NA t4081.T000598 puf8.1 5 Fruit puffiness, Fruit puffiness (PUF) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG45 SL3.0 SL3.0ch08 49340530 49340843 NA 0 0 10.1139/g02-091 t4081.M024849.1 NA t4081.T000599 puf8.2 5 Fruit puffiness, Fruit puffiness (PUF) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL CT111 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000600 puf9.1 5 Fruit puffiness, Fruit puffiness (PUF) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG254 SL3.0 SL3.0ch09 834647 835020 NA 0 0 10.1139/g02-091 t4081.M021528.1 NA t4081.T000601 rfc2.1 5 Fruit cracking, Radial fruit cracking (RFC) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG151 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000602 rfc9.1 5 Fruit cracking, Radial fruit cracking (RFC) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG328 SL3.0 SL3.0ch09 71837236 71837731 NA 0 0 10.1139/g02-091 t4081.M024722.1 NA t4081.T000603 rot2.1 5 Fruit rot, Fruit rot (ROT) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG48 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000604 rot8.1 5 Fruit rot, Fruit rot (ROT) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG45 SL3.0 SL3.0ch08 49340530 49340843 NA 0 0 10.1139/g02-091 t4081.M024849.1 NA t4081.T000605 rot8.2 5 Fruit rot, Fruit rot (ROT) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL CT111 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000606 rot9.1 5 Fruit rot, Fruit rot (ROT) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG551 SL3.0 SL3.0ch09 66583192 66583504 NA 0 0 10.1139/g02-091 t4081.M021357.1 NA t4081.T000607 scar1.1 5 Fruit stem scar size, Fruit stem scar size (SCAR) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG125 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000608 scar2.1 5 Fruit stem scar size, Fruit stem scar size (SCAR) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG492 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000609 scar3.1 5 Fruit stem scar size, Fruit stem scar size (SCAR) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG246 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000610 scar4.1 5 Fruit stem scar size, Fruit stem scar size (SCAR) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG15 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000611 scar6.1 5 Fruit stem scar size, Fruit stem scar size (SCAR) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL CT206 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000612 scar7.1 5 Fruit stem scar size, Fruit stem scar size (SCAR) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG128 SL3.0 SL3.0ch07 62688853 62689295 NA 0 0 10.1139/g02-091 t4081.M021364.1 NA t4081.T000613 scar8.1 5 Fruit stem scar size, Fruit stem scar size (SCAR) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL CT265 SL3.0 SL3.0ch08 63798500 63799458 NA 0 0 10.1139/g02-091 t4081.M024822.1 NA t4081.T000614 sn5.1 4 Seed number, Seed No. (SN) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG441 SL3.0 SL3.0ch05 1948445 1948859 NA 0 0 10.1139/g02-091 t4081.M021329.1 NA t4081.T000615 sn5.2 4 Seed number, Seed No. (SN) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG351 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000616 sn6.1 4 Seed number, Seed No. (SN) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG178 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000617 sn8.1 4 Seed number, Seed No. (SN) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL CD40 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000618 ssc8.1 5 Soluble solids content, Soluble solids content (SSC) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG330 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000619 ssc9.1 5 Soluble solids content, Soluble solids content (SSC) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG421 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000620 sw1.1 6 Seed weight, Seed weight (SW) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG70 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000621 sw4.1 6 Seed weight, Seed weight (SW) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL CT157 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000622 sw5.1 6 Seed weight, Seed weight (SW) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG351 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000623 sw7.1 6 Seed weight, Seed weight (SW) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG183 NA NA 0 0 NA 0 0 10.1139/g02-091 t4081.M021360.1 NA t4081.T000624 sw7.2 6 Seed weight, Seed weight (SW) QTL analysis Solanum esculentum cv. E6203 x Solanum pimpinellifolium (LA1589) BIL TG639 NA NA 0 0 NA 0 0 10.1139/g02-091 NA NA t4081.T000625 Ol-3 1 Powdery mildew resistance, resistance to powdery mildew (Oidium lycopersicum), Disease index (DI) QTL analysis Solanum esculentum cv. Moneymaker x Solanum hirsutum G1.1290 BC1 TG25/SCAF10 NA NA 0 0 H9A11 NA 0 0 1.9 10.1046/j.1365-2540.2000.00770.x NA NA t4081.T000626 Ol-1 1 Powdery mildew resistance, resistance to powdery mildew (Oidium lycopersicum), Disease index (DI) QTL analysis Solanum esculentum cv. Moneymaker x Solanum hirsutum G1.1560 F2 SCAF10 NA NA 0 0 H9A11 NA 0 0 15.9 10.1046/j.1365-2540.2000.00770.x t4081.M021387.1 NA t4081.T000627 bry12.1 5 Brix x red yield QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000628 bry3.1 5 Brix x red yield QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG517 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000629 bry3.2 5 Brix x red yield QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG42 SL3.0 SL3.0ch03 65787139 65787676 NA 0 0 10.1007/s00122-003-1422-x t4081.M021319.1 NA t4081.T000630 bry5.1 5 Brix x red yield QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG619 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000631 ec12.1 4 Fruit external color QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000631 ec12.1 5 Fruit external color QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000632 ec5.1 4 Fruit external color QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CD64 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000632 ec5.1 5 Fruit external color QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CD64 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000633 er2a.1 4 Fruit skin reticulation, Epidermal reticulation QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG276 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000633 er2a.1 5 Fruit skin reticulation, Epidermal reticulation QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG276 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000634 er4b.1 4 Fruit skin reticulation, Epidermal reticulation QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG587 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000634 er4b.1 5 Fruit skin reticulation, Epidermal reticulation QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG587 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000635 er5.1 4 Fruit skin reticulation, Epidermal reticulation QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CD64 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000635 er5.1 5 Fruit skin reticulation, Epidermal reticulation QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CD64 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000636 er8.1 4 Fruit skin reticulation, Epidermal reticulation QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG180a NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000636 er8.1 5 Fruit skin reticulation, Epidermal reticulation QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG180a NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000637 fc12.1 4 Fruit color (lab) QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000637 fc12.1 5 Fruit color (lab) QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000638 fert12.1 2 Plant fertility QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000639 fert3.1 2 Plant fertility QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG517 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000640 fert9.1 2 Plant fertility QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 GP39 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000641 fir10.1 5 Fruit firmness QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG566 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000642 fir2a.1 5 Fruit firmness QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT176 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000643 fir2b.1 5 Fruit firmness QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT59 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000644 fs10.1 4 Fruit shape QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG233 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000645 fs12.1 4 Fruit shape QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000646 fs2b.1 4 Fruit shape QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT59 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000647 fs8.1 4 Fruit shape QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT64 SL3.0 SL3.0ch08 60551154 60551438 NA 0 0 10.1007/s00122-003-1422-x t4081.M021337.1 NA t4081.T000648 fsz10.1 3 Fruit size QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG566 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000648 fsz10.1 4 Fruit size QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG566 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000649 fsz12.1 3 Fruit size QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000649 fsz12.1 4 Fruit size QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000650 fsz2b.1 3 Fruit size QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT59 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000650 fsz2b.1 4 Fruit size QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT59 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000651 fsz3.1 3 Fruit size QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG42 SL3.0 SL3.0ch03 65787139 65787676 NA 0 0 10.1007/s00122-003-1422-x t4081.M021319.1 NA t4081.T000651 fsz3.1 4 Fruit size QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG42 SL3.0 SL3.0ch03 65787139 65787676 NA 0 0 10.1007/s00122-003-1422-x t4081.M021319.1 NA t4081.T000652 fw10.1 3 Fruit weight QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG230 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000652 fw10.1 4 Fruit weight QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG230 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000653 fw12.1 3 Fruit weight QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000653 fw12.1 4 Fruit weight QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000654 fw3.1 3 Fruit weight QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG42 SL3.0 SL3.0ch03 65787139 65787676 NA 0 0 10.1007/s00122-003-1422-x t4081.M021319.1 NA t4081.T000654 fw3.1 4 Fruit weight QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG42 SL3.0 SL3.0ch03 65787139 65787676 NA 0 0 10.1007/s00122-003-1422-x t4081.M021319.1 NA t4081.T000655 gg1.1 5 Green gel in the interior of the fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG83 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000656 gg5.1 5 Green gel in the interior of the fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT167 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000657 gg8.1 5 Green gel in the interior of the fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT27 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000658 gw12.1 5 Grey wall QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000659 ic12.1 4 Fruit internal color QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG68 SL3.0 SL3.0ch12 1175541 1175967 NA 0 0 10.1007/s00122-003-1422-x t4081.M021344.1 NA t4081.T000660 or11.1 4 Fruit orange color QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG497 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000661 or12.1 4 Fruit orange color QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000662 pcf10.1 5 Percent cracked fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG233 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000663 pcf12.1 5 Percent cracked fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT99 SL3.0 SL3.0ch12 4705091 4705399 NA 0 0 10.1007/s00122-003-1422-x t4081.M021631.1 NA t4081.T000664 pcf2a.1 5 Percent cracked fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG608 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000665 pcf5.1 5 Percent cracked fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CD64 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000666 pcf8.1 5 Percent cracked fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT88 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000667 pcp10.1 4 Fruit pericarp thickness QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG52 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000668 pcp12.1 4 Fruit pericarp thickness QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT211 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000669 pgy12.1 3 Percent green (unripe) fruit yield QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000670 pgy8.1 3 Percent green (unripe) fruit yield QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG294 SL3.0 SL3.0ch08 65868192 65869092 NA 0 0 10.1007/s00122-003-1422-x t4081.M021339.1 NA t4081.T000671 pgy9.1 3 Percent green (unripe) fruit yield QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG421 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000672 ph12.1 5 Fruit pH QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG68 SL3.0 SL3.0ch12 1175541 1175967 NA 0 0 10.1007/s00122-003-1422-x t4081.M021344.1 NA t4081.T000673 ph3.1 5 Fruit pH QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG605 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000674 puf10.1 5 Fruit puffiness QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG230 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000675 puf2a.1 5 Fruit puffiness QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG582 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x t4081.M021312.1 NA t4081.T000676 puf2b.1 5 Fruit puffiness QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG140 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000677 puf3.1 5 Fruit puffiness QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG249 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000678 rdy12.1 3 Ripe-red fruit yield QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000679 rdy3.1 3 Ripe-red fruit yield QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG517 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000680 rdy3.2 3 Ripe-red fruit yield QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG42 SL3.0 SL3.0ch03 65787139 65787676 NA 0 0 10.1007/s00122-003-1422-x t4081.M021319.1 NA t4081.T000681 rdy5.1 3 Ripe-red fruit yield QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG619 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000682 rot12.1 5 Percentage of rotten fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000683 rot3.1 5 Percentage of rotten fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG517 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000684 rot5.1 5 Percentage of rotten fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG619 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000685 rot8.1 5 Percentage of rotten fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG553 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000686 rot9.1 5 Percentage of rotten fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 GP39 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000687 ssc12.1 5 Sugar content (soluble solid content in Brix) QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000688 ssc4a.1 5 Sugar content (soluble solid content in Brix) QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT145b NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000689 ssc9.1 5 Sugar content (soluble solid content in Brix) QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG421 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000690 str10.1 6 Stem retention QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG566 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000691 str11.1 6 Stem retention QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT269 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000692 str12.1 6 Stem retention QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT211 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000693 str2a.1 6 Stem retention QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT255 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000694 str2b.1 6 Stem retention QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG140 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000695 str3.1 6 Stem retention QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG324 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x t4081.M024740.1 NA t4081.T000696 str4a.1 6 Stem retention QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT161 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000697 str6a.1 6 Stem retention QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT216 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000698 str9.1 6 Stem retention QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG291 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000699 vis12.1 5 Fruit viscosity QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000700 vis2a.1 5 Fruit viscosity QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT176 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000701 vis3.1 5 Fruit viscosity QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG324 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x t4081.M024740.1 NA t4081.T000702 vis9.1 5 Fruit viscosity QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG404 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000703 ye4a.1 5 Yellow eye, Stem-scar penetration into the fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CD55 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000704 ye8.1 5 Yellow eye, Stem-scar penetration into the fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG434 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000705 yld12.1 3 Total yield, Total yield including ripe (red) and unripe (green) fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT79 SL3.0 SL3.0ch12 1974553 1974717 NA 0 0 10.1007/s00122-003-1422-x t4081.M021629.1 NA t4081.T000706 yld3.1 3 Total yield, Total yield including ripe (red) and unripe (green) fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG517 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000707 yld3.2 3 Total yield, Total yield including ripe (red) and unripe (green) fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG42 SL3.0 SL3.0ch03 65787139 65787676 NA 0 0 10.1007/s00122-003-1422-x t4081.M021319.1 NA t4081.T000708 yld5.1 3 Total yield, Total yield including ripe (red) and unripe (green) fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 TG619 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000709 yld8.1 3 Total yield, Total yield including ripe (red) and unripe (green) fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 CT27 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000710 yld9.1 3 Total yield, Total yield including ripe (red) and unripe (green) fruit QTL analysis Solanum esculentum E6203 x Solanum pennellii accession LA1657 BC2 GP39 NA NA 0 0 NA 0 0 10.1007/s00122-003-1422-x NA NA t4081.T000711 lfaa4.1 4 Leaflet apex angle QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 cLED19B12 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000712 lfaa5.1 4 Leaflet apex angle QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 cLET7N9 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000713 lfaa5.2 4 Leaflet apex angle QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 TG318 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x t4081.M021331.1 NA t4081.T000714 lfaa7.1 4 Leaflet apex angle QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 TG216 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000715 lfdlr5.1 4 Leaflet distance: length ratio QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 T1640 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000716 lfl11.1 4 Leaflet length QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 SSR46 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000717 lfl11.2 4 Leaflet length QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 T1014 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000718 lfl12.1 4 Leaflet length QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 P64 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000719 lfl2.1 4 Leaflet length QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 cLPT1A21 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000720 lflr1.1 4 Leaflet width: length ratio QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 T67 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000721 lflr4.1 4 Leaflet width: length ratio QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 T1232 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000722 lfn1.1 4 Leaflet number QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 T67 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000723 lfn5.1 4 Leaflet number QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 T1335 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000724 lfsa10.1 4 Leaflet surface area QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 T246 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000725 lfsa11.1 4 Leaflet surface area QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 CT182 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000726 lfsa11.2 4 Leaflet surface area QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 T1648 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000727 lfw12.1 4 Leaflet width QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 T1684 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000728 lfw7.1 4 Leaflet width QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 T848 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000729 peaa11.1 4 Petal apex angle QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 cLEX4G10 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000730 pel12.1 4 Petal length QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 P68 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000731 pel7.1 4 Petal length QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 cLED22K8 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000732 pen11.1 4 Petal number QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 TG105A SL3.0 SL3.0ch06 41956447 41956654 NA 0 0 10.1007/s00122-004-1669-x t4081.M024919.1 NA t4081.T000733 pesa12.1 4 Petal surface area QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 P68 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000734 pll12.1 4 Petiolule length QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 P68 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000735 pll7.1 4 Petiolule length QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 TG499 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000736 seaa5.1 4 Sepal apex angle QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 T1335 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000737 seaa9.1 4 Sepal apex angle QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 T1212 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000738 sedlr11.1 4 Sepal distance: length ratio QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 TG651 SL3.0 SL3.0ch11 2267146 2267370 NA 0 0 10.1007/s00122-004-1669-x t4081.M021622.1 NA t4081.T000739 sedlr5.1 4 Sepal distance: length ratio QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 cLET7N9 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000740 sedlr8.1 4 Sepal distance: length ratio QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 T721 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000741 selr5.1 4 Sepal width: length ratio QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 CD64 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000742 selr8.1 4 Sepal width: length ratio QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 TG176 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x t4081.M021335.1 NA t4081.T000743 sen11.1 4 Sepal number QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 TG105A SL3.0 SL3.0ch06 41956447 41956654 NA 0 0 10.1007/s00122-004-1669-x t4081.M024919.1 NA t4081.T000744 sen2.1 4 Sepal number QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 cLEZ17J15A NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000745 sesa3.1 4 Sepal surface area QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 T781 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000746 sew3.1 4 Sepal width QTL analysis Solanum esculentum LA925 x Solannum pennellii LA716 F2 T781 NA NA 0 0 NA 0 0 10.1007/s00122-004-1669-x NA NA t4081.T000747 1 Salt tolerance QTL analysis Solanum esculentum Mill. breeding line (NC84173) x Solanum pimpinellifolium (Jusl.) Mill. accession (LA722) BC1S1 TG460 SL3.0 SL3.0ch01 85968721 85969170 CT191 NA 0 0 10.1139/g01-030 t4081.M021308.1 NA t4081.T000748 1 Salt tolerance QTL analysis Solanum esculentum Mill. breeding line (NC84173) x Solanum pimpinellifolium (Jusl.) Mill. accession (LA722) BC1S1 TG497 NA NA 0 0 CT107 NA 0 0 10.1139/g01-030 NA NA t4081.T000749 1 Salt tolerance QTL analysis Solanum esculentum Mill. breeding line (NC84173) x Solanum pimpinellifolium (Jusl.) Mill. accession (LA722) BC1S1 CT82 NA NA 0 0 TG24 NA 0 0 10.1139/g01-030 NA NA t4081.T000750 1 Salt tolerance QTL analysis Solanum esculentum Mill. breeding line (NC84173) x Solanum pimpinellifolium (Jusl.) Mill. accession (LA722) BC1S1 CT167 NA NA 0 0 NA 0 0 10.1139/g01-030 NA NA t4081.T000751 1 Salt tolerance QTL analysis Solanum esculentum Mill. breeding line (NC84173) x Solanum pimpinellifolium (Jusl.) Mill. accession (LA722) BC1S1 CT285 NA NA 0 0 TG477 NA 0 0 10.1139/g01-030 NA NA t4081.T000752 EBR1.1 1 Early blight resistance, early blight (Alternaria solani) resistance, area under the disease progress curve (AUDPC) QTL analysis Solanum esculentum Mill.(NC84173) x Solanum hirsutum Humb. and Bonpl. accession (PI126445) BC1,BC1S1 TG559 NA NA 0 0 TG208a NA 0 0 7.0 (SIM), 5.9 (CIM) 10.1007/s00122-002-0870-z NA NA t4081.T000753 EBR10.1 1 Early blight resistance, early blight (Alternaria solani) resistance, area under the disease progress curve (AUDPC) QTL analysis Solanum esculentum Mill.(NC84173) x Solanum hirsutum Humb. and Bonpl. accession (PI126445) BC1,BC1S1 TG241 NA NA 0 0 TG403 NA 0 0 6.8 (SIM), 5.0 (CIM) 10.1007/s00122-002-0870-z NA NA t4081.T000754 EBR11.1 1 Early blight resistance, early blight (Alternaria solani) resistance, area under the disease progress curve (AUDPC) QTL analysis Solanum esculentum Mill.(NC84173) x Solanum hirsutum Humb. and Bonpl. accession (PI126445) BC1,BC1S1 CT168 NA NA 0 0 TG508 NA 0 0 3.8 (SIM) 10.1007/s00122-002-0870-z t4081.M021621.1 NA t4081.T000755 EBR11.2 1 Early blight resistance, early blight (Alternaria solani) resistance, area under the disease progress curve (AUDPC) QTL analysis Solanum esculentum Mill.(NC84173) x Solanum hirsutum Humb. and Bonpl. accession (PI126445) BC1,BC1S1 TG147 NA NA 0 0 A41.3 NA 0 0 3.2 (CIM) 10.1007/s00122-002-0870-z NA NA t4081.T000756 EBR12.1 1 Early blight resistance, early blight (Alternaria solani) resistance, area under the disease progress curve (AUDPC) QTL analysis Solanum esculentum Mill.(NC84173) x Solanum hirsutum Humb. and Bonpl. accession (PI126445) BC1,BC1S1 CT100 NA NA 0 0 TG68 SL3.0ch12 1175541 1175967 3.1 (SIM) 10.1007/s00122-002-0870-z NA t4081.M021344.1 t4081.T000757 EBR12.2 1 Early blight resistance, early blight (Alternaria solani) resistance, area under the disease progress curve (AUDPC) QTL analysis Solanum esculentum Mill.(NC84173) x Solanum hirsutum Humb. and Bonpl. accession (PI126445) BC1 AN23.390 NA NA 0 0 TG180 NA 0 0 4.1 (SIM) 10.1007/s00122-002-0870-z NA t4081.M021753.1 t4081.T000758 EBR2.1 1 Early blight resistance, early blight (Alternaria solani) resistance, area under the disease progress curve (AUDPC) QTL analysis Solanum esculentum Mill.(NC84173) x Solanum hirsutum Humb. and Bonpl. accession (PI126445) BC1,BC1S1 TG337 NA NA 0 0 CT59 NA 0 0 2.9 (SIM) 10.1007/s00122-002-0870-z NA NA t4081.T000759 EBR3.1 1 Early blight resistance, early blight (Alternaria solani) resistance, area under the disease progress curve (AUDPC) QTL analysis Solanum esculentum Mill.(NC84173) x Solanum hirsutum Humb. and Bonpl. accession (PI126445) BC1S1 TG411 NA NA 0 0 TG214 NA 0 0 2.9 (SIM) 10.1007/s00122-002-0870-z NA NA t4081.T000760 EBR5.1 1 Early blight resistance, early blight (Alternaria solani) resistance, area under the disease progress curve (AUDPC) QTL analysis Solanum esculentum Mill.(NC84173) x Solanum hirsutum Humb. and Bonpl. accession (PI126445) BC1S1 TG441 SL3.0 SL3.0ch05 1948445 1948859 CT242 NA 0 0 2.6 (SIM) 10.1007/s00122-002-0870-z t4081.M021329.1 t4081.M024768.1 t4081.T000761 EBR5.2 1 Early blight resistance, early blight (Alternaria solani) resistance, area under the disease progress curve (AUDPC) QTL analysis Solanum esculentum Mill.(NC84173) x Solanum hirsutum Humb. and Bonpl. accession (PI126445) BC1,BC1S1 XLRR.370 NA NA 0 0 CT202 NA 0 0 3.7 (SIM), 3.6 (CIM) 10.1007/s00122-002-0870-z NA NA t4081.T000762 EBR8.1 1 Early blight resistance, early blight (Alternaria solani) resistance, area under the disease progress curve (AUDPC) QTL analysis Solanum esculentum Mill.(NC84173) x Solanum hirsutum Humb. and Bonpl. accession (PI126445) BC1S1 CD40 NA NA 0 0 TG176 NA 0 0 3.0 (SIM), 3.7 (CIM) 10.1007/s00122-002-0870-z NA t4081.M021335.1 t4081.T000763 EBR8.2 1 Early blight resistance, early blight (Alternaria solani) resistance, area under the disease progress curve (AUDPC) QTL analysis Solanum esculentum Mill.(NC84173) x Solanum hirsutum Humb. and Bonpl. accession (PI126445) BC1S1 TG330 NA NA 0 0 TG294 SL3.0ch08 65868192 65869092 5.4 (SIM), 5.2 (CIM) 10.1007/s00122-002-0870-z NA t4081.M021339.1 t4081.T000764 EBR9.1 1 Early blight resistance, early blight (Alternaria solani) resistance, area under the disease progress curve (AUDPC) QTL analysis Solanum esculentum Mill.(NC84173) x Solanum hirsutum Humb. and Bonpl. accession (PI126445) BC1,BC1S1 RLRR.130 NA NA 0 0 CLRR.950 NA 0 0 8.2 (SIM), 8.1 (CIM) 10.1007/s00122-002-0870-z NA NA t4081.T000765 EBR9.2 1 Early blight resistance, early blight (Alternaria solani) resistance, area under the disease progress curve (AUDPC) QTL analysis Solanum esculentum Mill.(NC84173) x Solanum hirsutum Humb. and Bonpl. accession (PI126445) BC1,BC1S1 TG424 NA NA 0 0 TG429 NA 0 0 5.1 (SIM), 3.8 (CIM) 10.1007/s00122-002-0870-z NA NA t4081.T000766 5 Fruit quality (chemical measurement), LYC (lycopene content) QTL analysis Solanum esculentum var. cerasiforme (Cervil) x Solanum esculentum (Levovil) RIL CT065 NA NA 0 0 NA 0 0 24 5.5 10.1093/jxb/erf058 NA NA t4081.T000767 5 Fruit quality (physical trait), FD (diameter) QTL analysis Solanum esculentum var. cerasiforme (Cervil) x Solanum esculentum (Levovil) RIL SwS3 NA NA 0 0 NA 0 0 23 5.1 10.1093/jxb/erf058 NA NA t4081.T000768 5 Fruit quality (physical trait), FW (fruit weight) QTL analysis Solanum esculentum var. cerasiforme (Cervil) x Solanum esculentum (Levovil) RIL TG167 NA NA 0 0 NA 0 0 81 14 10.1093/jxb/erf058 t4081.M024845.1 NA t4081.T000769 5 Fruit quality (physical trait), FW (fruit weight) QTL analysis Solanum esculentum var. cerasiforme (Cervil) x Solanum esculentum (Levovil) RIL H42M47-112L NA NA 0 0 NA 0 0 85 5.4 10.1093/jxb/erf058 NA NA t4081.T000770 5 Fruit quality (texture attribute), MEA (mealiness) QTL analysis Solanum esculentum var. cerasiforme (Cervil) x Solanum esculentum (Levovil) RIL TG287 NA NA 0 0 NA 0 0 66 3.9 10.1093/jxb/erf058 NA NA t4081.T000771 5 Fruit quality (aroma attributes), MNO (3-methylpentan-1-ol) QTL analysis Solanum esculentum var. cerasiforme (Cervil) x Solanum esculentum (Levovil) RIL TG287 NA NA 0 0 NA 0 0 66 21.6 10.1093/jxb/erf058 NA NA t4081.T000772 5 Fruit quality (aroma attributes), MEO (2-(methylthio)ethanol) QTL analysis Solanum esculentum var. cerasiforme (Cervil) x Solanum esculentum (Levovil) RIL TG045 NA NA 0 0 NA 0 0 8 13.3 10.1093/jxb/erf058 NA NA t4081.T000773 5 Fruit quality (texture attribute), MEL (meltiness) QTL analysis Solanum esculentum var. cerasiforme (Cervil) x Solanum esculentum (Levovil) RIL CT032 NA NA 0 0 NA 0 0 3 9.4 10.1093/jxb/erf058 NA NA t4081.T000774 B-c1.1 5 fruit quality, Beta-carotene (B-c, g/g DW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 DXS NA NA 0 0 SSR75 NA 0 0 17.1 10.1007/s00122-015-2563-4 NA NA t4081.T000775 B-c10 5 fruit quality, Beta-carotene (B-c, g/g DW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 TG408 NA NA 0 0 T0308241 NA 0 0 37.1 10.1007/s00122-015-2563-4 NA NA t4081.T000776 B-c12 5 fruit quality, Beta-carotene (B-c, g/g DW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 TG111 SL3.0 SL3.0ch12 62726429 62726825 LEOH66 NA 0 0 32.8 10.1007/s00122-015-2563-4 t4081.M021612.1 NA t4081.T000777 B-c2.1 5 fruit quality, Beta-carotene (B-c, g/g DW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC140 NA NA 0 0 SSR66 NA 0 0 20.5 10.1007/s00122-015-2563-4 NA NA t4081.T000778 B-c3 5 fruit quality, Beta-carotene (B-c, g/g DW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC125 NA NA 0 0 SNP3_57 Kb NA 0 0 39.8 10.1007/s00122-015-2563-4 NA NA t4081.T000779 B-c4 5 fruit quality, Beta-carotene (B-c, g/g DW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SSR94 NA NA 0 0 LEga003 SL3.0ch04 26605580 26605817 59.9 10.1007/s00122-015-2563-4 NA t4081.M021476.1 t4081.T000780 CA10 5 fruit quality, Citric acid (CA, g/mg FW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 TMC3f8b NA NA 0 0 T0590 g NA 0 0 58.4 10.1007/s00122-015-2563-4 NA NA t4081.T000781 CA11.1 5 fruit quality, Citric acid (CA, g/mg FW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC096 NA NA 0 0 K_GluReg NA 0 0 57.8 10.1007/s00122-015-2563-4 NA NA t4081.T000782 CA11.2 5 fruit quality, Citric acid (CA, g/mg FW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC098 NA NA 0 0 K_Channel NA 0 0 90.2 10.1007/s00122-015-2563-4 NA NA t4081.T000783 CA6.1 5 fruit quality, Citric acid (CA, g/mg FW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC054 NA NA 0 0 U218252 NA 0 0 14.6 10.1007/s00122-015-2563-4 NA NA t4081.T000784 CA6.2 5 fruit quality, Citric acid (CA, g/mg FW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SSR578 NA NA 0 0 Ca_Calm NA 0 0 31.2 10.1007/s00122-015-2563-4 NA NA t4081.T000785 Dw/Fw2 3 fruit quality, Dry weight/fresh weight (Dw/Fw) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 K_Isoc NA NA 0 0 Glutamin NA 0 0 57.3 10.1007/s00122-015-2563-4 NA NA t4081.T000785 Dw/Fw2 5 fruit quality, Dry weight/fresh weight (Dw/Fw) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 K_Isoc NA NA 0 0 Glutamin NA 0 0 57.3 10.1007/s00122-015-2563-4 NA NA t4081.T000786 Dw/Fw3 3 fruit quality, Dry weight/fresh weight (Dw/Fw) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SSR22-SNP3 NA NA 0 0 11 Kb NA 0 0 37.2 10.1007/s00122-015-2563-4 NA NA t4081.T000786 Dw/Fw3 5 fruit quality, Dry weight/fresh weight (Dw/Fw) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SSR22-SNP3 NA NA 0 0 11 Kb NA 0 0 37.2 10.1007/s00122-015-2563-4 NA NA t4081.T000787 Dw/Fw5 3 fruit quality, Dry weight/fresh weight (Dw/Fw) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC086 NA NA 0 0 PC184a NA 0 0 47.6 10.1007/s00122-015-2563-4 NA NA t4081.T000787 Dw/Fw5 5 fruit quality, Dry weight/fresh weight (Dw/Fw) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC086 NA NA 0 0 PC184a NA 0 0 47.6 10.1007/s00122-015-2563-4 NA NA t4081.T000788 Dw/Fw7.1 3 fruit quality, Dry weight/fresh weight (Dw/Fw) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SPS183 NA NA 0 0 U222756 NA 0 0 13.1 10.1007/s00122-015-2563-4 NA NA t4081.T000788 Dw/Fw7.1 5 fruit quality, Dry weight/fresh weight (Dw/Fw) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SPS183 NA NA 0 0 U222756 NA 0 0 13.1 10.1007/s00122-015-2563-4 NA NA t4081.T000789 Dw/Fw7.2 3 fruit quality, Dry weight/fresh weight (Dw/Fw) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC185 NA NA 0 0 PC059 NA 0 0 30.5 10.1007/s00122-015-2563-4 NA NA t4081.T000789 Dw/Fw7.2 5 fruit quality, Dry weight/fresh weight (Dw/Fw) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC185 NA NA 0 0 PC059 NA 0 0 30.5 10.1007/s00122-015-2563-4 NA NA t4081.T000790 Fru/Glu11 5 fruit quality, Fructose/glucose (Fru/Glu) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SSR80 SL3.0 SL3.0ch11 2274394 2274579 PC092 NA 0 0 0 10.1007/s00122-015-2563-4 t4081.M024930.1 NA t4081.T000791 Fru/Glu8 5 fruit quality, Fructose/glucose (Fru/Glu) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC_D NA NA 0 0 PC069 NA 0 0 29.7 10.1007/s00122-015-2563-4 NA NA t4081.T000792 Fru2 5 fruit quality, Fructose (Fru, g/mg FW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC016 NA NA 0 0 SSR26 NA 0 0 47.2 10.1007/s00122-015-2563-4 NA NA t4081.T000793 FrW1 3 fruit quality, Fruit weight (FrW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SL10975i NA NA 0 0 PC119 NA 0 0 35.3 10.1007/s00122-015-2563-4 NA NA t4081.T000793 FrW1 5 fruit quality, Fruit weight (FrW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SL10975i NA NA 0 0 PC119 NA 0 0 35.3 10.1007/s00122-015-2563-4 NA NA t4081.T000794 FrW11.1 3 fruit quality, Fruit weight (FrW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 cLET24J2 NA NA 0 0 SL10615 NA 0 0 68.6 10.1007/s00122-015-2563-4 NA NA t4081.T000794 FrW11.1 5 fruit quality, Fruit weight (FrW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 cLET24J2 NA NA 0 0 SL10615 NA 0 0 68.6 10.1007/s00122-015-2563-4 NA NA t4081.T000795 FrW11.2 3 fruit quality, Fruit weight (FrW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 ChCr11_4 NA NA 0 0 UalT11.5 NA 0 0 92.4 10.1007/s00122-015-2563-4 NA NA t4081.T000795 FrW11.2 5 fruit quality, Fruit weight (FrW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 ChCr11_4 NA NA 0 0 UalT11.5 NA 0 0 92.4 10.1007/s00122-015-2563-4 NA NA t4081.T000796 FrW2 3 fruit quality, Fruit weight (FrW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 X63093 NA NA 0 0 fw2.2 SL3.0ch02 52888653 52888803 76.4 10.1007/s00122-015-2563-4 NA t4081.M024858.1 t4081.T000796 FrW2 5 fruit quality, Fruit weight (FrW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 X63093 NA NA 0 0 fw2.2 SL3.0ch02 52888653 52888803 76.4 10.1007/s00122-015-2563-4 NA t4081.M024858.1 t4081.T000797 FrW7.1 3 fruit quality, Fruit weight (FrW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SPS183 NA NA 0 0 U222756 NA 0 0 13.1 10.1007/s00122-015-2563-4 NA NA t4081.T000797 FrW7.1 5 fruit quality, Fruit weight (FrW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SPS183 NA NA 0 0 U222756 NA 0 0 13.1 10.1007/s00122-015-2563-4 NA NA t4081.T000798 FrW7.2 3 fruit quality, Fruit weight (FrW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC185 NA NA 0 0 PC059 NA 0 0 30.5 10.1007/s00122-015-2563-4 NA NA t4081.T000798 FrW7.2 5 fruit quality, Fruit weight (FrW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC185 NA NA 0 0 PC059 NA 0 0 30.5 10.1007/s00122-015-2563-4 NA NA t4081.T000799 FrW7.3 3 fruit quality, Fruit weight (FrW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC064 NA NA 0 0 MDH154 NA 0 0 65.6 10.1007/s00122-015-2563-4 NA NA t4081.T000799 FrW7.3 5 fruit quality, Fruit weight (FrW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC064 NA NA 0 0 MDH154 NA 0 0 65.6 10.1007/s00122-015-2563-4 NA NA t4081.T000800 Glu2 5 fruit quality, Glucose (Glu, g/mg FW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC122 NA NA 0 0 LEOH348 NA 0 0 51.9 10.1007/s00122-015-2563-4 NA NA t4081.T000801 Glu7.1 5 fruit quality, Glucose (Glu, g/mg FW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SPS183 NA NA 0 0 U222756 NA 0 0 13.1 10.1007/s00122-015-2563-4 NA NA t4081.T000802 Lyc2.1 5 fruit quality, Lycopene (Lyc, g/g DW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC014 NA NA 0 0 SSR96 NA 0 0 9.7 10.1007/s00122-015-2563-4 NA NA t4081.T000803 Lyc4 5 fruit quality, Lycopene (Lyc, g/g DW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SSR94 NA NA 0 0 LEga003 SL3.0ch04 26605580 26605817 59.9 10.1007/s00122-015-2563-4 NA t4081.M021476.1 t4081.T000804 Lyc6 5 fruit quality, Lycopene (Lyc, g/g DW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SP NA NA 0 0 U222112 NA 0 0 54 10.1007/s00122-015-2563-4 NA NA t4081.T000805 MA11 5 fruit quality, Malic acid (MA, g/mg FW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC098 NA NA 0 0 K_Channel NA 0 0 90.2 10.1007/s00122-015-2563-4 NA NA t4081.T000806 pH3 5 fruit quality, pH QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SL10480i NA NA 0 0 U225952 NA 0 0 29.6 10.1007/s00122-015-2563-4 NA NA t4081.T000807 pH6 5 fruit quality, pH QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 CaCalm NA NA 0 0 CaRet NA 0 0 34.7 10.1007/s00122-015-2563-4 NA NA t4081.T000808 pH8 5 fruit quality, pH QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 LEct004 SL3.0 SL3.0ch08 29232371 29232718 PC_F NA 0 0 18.9 10.1007/s00122-015-2563-4 t4081.M021534.1 NA t4081.T000809 Rtu2.1 1 Resistance to two-spotted spider mite QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SSR605 NA NA 0 0 cLEF41 NA 0 0 35.4 4.57 10.1007/s00122-012-1961-0 NA NA t4081.T000810 Rtu2.2 1 Resistance to two-spotted spider mite QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SGN4 NA NA 0 0 SGN2 NA 0 0 94.7 15.43 10.1007/s00122-012-1961-0 NA NA t4081.T000811 TA1.1 5 fruit quality, Titriable acidity (TA, meqNaOH/100 ml juice) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SSR98 NA NA 0 0 SSR192 NA 0 0 9.3 10.1007/s00122-015-2563-4 NA NA t4081.T000812 TA1.2 5 fruit quality, Titriable acidity (TA, meqNaOH/100 ml juice) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC002 NA NA 0 0 SL20268i NA 0 0 24.7 10.1007/s00122-015-2563-4 NA NA t4081.T000813 TA3.1 5 fruit quality, Titriable acidity (TA, meqNaOH/100 ml juice) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SNP3_57 Kb NA NA 0 0 SSR231 NA 0 0 41.8 10.1007/s00122-015-2563-4 NA NA t4081.T000814 TA3.2 5 fruit quality, Titriable acidity (TA, meqNaOH/100 ml juice) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SSR231 NA NA 0 0 SNP3_Betain NA 0 0 42.8 10.1007/s00122-015-2563-4 NA NA t4081.T000815 TA5.1 5 fruit quality, Titriable acidity (TA, meqNaOH/100 ml juice) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 LEOH-9.1 NA NA 0 0 PC049 NA 0 0 57.7 10.1007/s00122-015-2563-4 NA NA t4081.T000816 TSS1 5 fruit quality, Total soluble solids (TSS, Brix) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC002 NA NA 0 0 SL20268i NA 0 0 24.7 10.1007/s00122-015-2563-4 NA NA t4081.T000817 TSS12 5 fruit quality, Total soluble solids (TSS, Brix) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC104 NA NA 0 0 TMC6d10_n NA 0 0 11.7 10.1007/s00122-015-2563-4 NA NA t4081.T000818 TSS2 5 fruit quality, Total soluble solids (TSS, Brix) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SSR26 NA NA 0 0 SSR32 NA 0 0 49.7 10.1007/s00122-015-2563-4 NA NA t4081.T000819 TSS3.1 5 fruit quality, Total soluble solids (TSS, Brix) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SSR22 NA NA 0 0 SNP3_11 Kb NA 0 0 37.2 10.1007/s00122-015-2563-4 NA NA t4081.T000820 TSS3.2 5 fruit quality, Total soluble solids (TSS, Brix) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 LEOH127 NA NA 0 0 PC33 NA 0 0 66.1 10.1007/s00122-015-2563-4 NA NA t4081.T000821 TSS5 5 fruit quality, Total soluble solids (TSS, Brix) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SL20210i NA NA 0 0 SL10100i NA 0 0 44.2 10.1007/s00122-015-2563-4 NA NA t4081.T000822 TSS7 5 fruit quality, Total soluble solids (TSS, Brix) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SPS183 NA NA 0 0 U222756 NA 0 0 13.1 10.1007/s00122-015-2563-4 NA NA t4081.T000823 VitC1 5 fruit quality, Vitamin C (VitC, mg/100 g FW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC010 NA NA 0 0 SSR9 NA 0 0 61 10.1007/s00122-015-2563-4 NA NA t4081.T000824 VitC3.1 5 fruit quality, Vitamin C (VitC, mg/100 g FW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SNP3_57 Kb NA NA 0 0 SSR231 NA 0 0 41.8 10.1007/s00122-015-2563-4 NA NA t4081.T000825 VitC7 5 fruit quality, Vitamin C (VitC, mg/100 g FW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 SPS183 NA NA 0 0 U222756 NA 0 0 13.1 10.1007/s00122-015-2563-4 NA NA t4081.T000826 VitC8 5 fruit quality, Vitamin C (VitC, mg/100 g FW) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium accession TO-937 RIL,F8 PC069 NA NA 0 0 TC187 NA 0 0 31.4 10.1007/s00122-015-2563-4 NA NA t4081.T000827 1 Seed quality_high-temperature stress, High-temperature stress I_mean germination rate (reciprocal of the mean germination time; MGT-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 69227784 NA NA 0 0 NA 0 0 61.7 2.79 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000827 4 Seed quality_high-temperature stress, High-temperature stress I_mean germination rate (reciprocal of the mean germination time; MGT-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 69227784 NA NA 0 0 NA 0 0 61.7 2.79 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000828 1 Seed quality_osmotic stress, Osmotic I_reciprocal of time to 10% of germination of viable seeds (h-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 31348124 NA NA 0 0 NA 0 0 7.6 3.57 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000828 4 Seed quality_osmotic stress, Osmotic I_reciprocal of time to 10% of germination of viable seeds (h-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 31348124 NA NA 0 0 NA 0 0 7.6 3.57 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000829 1 Seed quality_uniformity, uniformity (reciprocal of time interval between 75 and 25% viable seeds to germinate; h-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 58802824 NA NA 0 0 NA 0 0 71.7 3.34 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000829 4 Seed quality_uniformity, uniformity (reciprocal of time interval between 75 and 25% viable seeds to germinate; h-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 58802824 NA NA 0 0 NA 0 0 71.7 3.34 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000830 1 Seed quality_oxidative stress, Oxidative stress_mean germination rate QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 56773424 NA NA 0 0 NA 0 0 75.1 5.49 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000830 4 Seed quality_oxidative stress, Oxidative stress_mean germination rate QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 56773424 NA NA 0 0 NA 0 0 75.1 5.49 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000831 1 Seed quality_oxidative stress, Oxidative stress_area under the germination curve QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 62100796 NA NA 0 0 NA 0 0 79.6 4.72 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000831 4 Seed quality_oxidative stress, Oxidative stress_area under the germination curve QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 62100796 NA NA 0 0 NA 0 0 79.6 4.72 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000832 1 Seed quality_germination time, reciprocal of time to 10% of germination of viable seeds (h-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 43582592 NA NA 0 0 NA 0 0 102.7 5.59 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000832 4 Seed quality_germination time, reciprocal of time to 10% of germination of viable seeds (h-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 43582592 NA NA 0 0 NA 0 0 102.7 5.59 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000833 1 Seed quality_oxidative stress, Oxidative stress_reciprocal of time to 10% of germination of viable seeds (h-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 61494964 NA NA 0 0 NA 0 0 83.2 3.4 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000833 4 Seed quality_oxidative stress, Oxidative stress_reciprocal of time to 10% of germination of viable seeds (h-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 61494964 NA NA 0 0 NA 0 0 83.2 3.4 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000834 1 Seed quality_oxidative stress, Oxidative stress_mean germination rate QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 15684096 NA NA 0 0 NA 0 0 54.2 6.77 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000834 4 Seed quality_oxidative stress, Oxidative stress_mean germination rate QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 15684096 NA NA 0 0 NA 0 0 54.2 6.77 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000835 1 Seed quality_osmotic stress, Osmotic II_reciprocal of time to 10% of germination of viable seeds (h-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 66260384 NA NA 0 0 NA 0 0 98.9 2.98 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000835 4 Seed quality_osmotic stress, Osmotic II_reciprocal of time to 10% of germination of viable seeds (h-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 66260384 NA NA 0 0 NA 0 0 98.9 2.98 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000836 1 Seed quality_oxidative stress, Oxidative stress_reciprocal of time to 10% of germination of viable seeds (h-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 536147 NA NA 0 0 NA 0 0 0 2.49 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000836 4 Seed quality_oxidative stress, Oxidative stress_reciprocal of time to 10% of germination of viable seeds (h-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 536147 NA NA 0 0 NA 0 0 0 2.49 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000837 1 Seed quality_salt stress, Salt I_reciprocal of time to 10% of germination of viable seeds (h-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 5472482 NA NA 0 0 NA 0 0 10.7 3.07 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000837 4 Seed quality_salt stress, Salt I_reciprocal of time to 10% of germination of viable seeds (h-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 5472482 NA NA 0 0 NA 0 0 10.7 3.07 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000838 1 Seed quality_osmotic stress, Osmotic II_reciprocal of time to 10% of germination of viable seeds (h-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 47976208 NA NA 0 0 NA 0 0 57.2 5.58 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000838 4 Seed quality_osmotic stress, Osmotic II_reciprocal of time to 10% of germination of viable seeds (h-1) QTL analysis Solanum lycopersicum cv. Moneymaker x Solanum pimpinellifolium G1.1554 RIL,F8 47976208 NA NA 0 0 NA 0 0 57.2 5.58 10.1111/j.1365-3040.2011.02463.x NA NA t4081.T000839 dtf12 4 Days to flowering QTL analysis Solanum lycopersicum LE777 x Solanum chmielewskii CH6047 F2 SSR20 NA NA 0 0 NA 0 0 35 8.8 10.1139/g07-009 NA NA t4081.T000840 dtf5 4 Days to flowering QTL analysis Solanum lycopersicum LE777 x Solanum chmielewskii CH6047 F2 T1777 NA NA 0 0 NA 0 0 63.7 15.6 10.1139/g07-009 NA NA t4081.T000841 ln1 4 Leaf number QTL analysis Solanum lycopersicum LE777 x Solanum chmielewskii CH6047 F2 ACC2 NA NA 0 0 NA 0 0 30.9 2.9 10.1139/g07-009 NA NA t4081.T000842 ln3 4 Leaf number QTL analysis Solanum lycopersicum LE777 x Solanum chmielewskii CH6047 F2 FA NA NA 0 0 NA 0 0 43.2 4.7 10.1139/g07-009 NA NA t4081.T000843 ln4 4 Leaf number QTL analysis Solanum lycopersicum LE777 x Solanum chmielewskii CH6047 F2 F84l NA NA 0 0 NA 0 0 35.9 2.5 10.1139/g07-009 NA NA t4081.T000844 ln5 4 Leaf number QTL analysis Solanum lycopersicum LE777 x Solanum chmielewskii CH6047 F2 PHYB2 NA NA 0 0 NA 0 0 57.8 11.4 10.1139/g07-009 NA NA t4081.T000845 ln7 4 Leaf number QTL analysis Solanum lycopersicum LE777 x Solanum chmielewskii CH6047 F2 F206c NA NA 0 0 NA 0 0 17.3 7.2 10.1139/g07-009 NA NA t4081.T000846 ln8 4 Leaf number QTL analysis Solanum lycopersicum LE777 x Solanum chmielewskii CH6047 F2 TG510 NA NA 0 0 NA 0 0 37.1 4 10.1139/g07-009 NA NA t4081.T000847 Bs4 1 Bacterial spot resistance, Bacterial spot ( caused by Xanthomonas campestris pv. Vesicatoria) resistance QTL analysis Solanum lycopersicum Moneymaker x Solanum pennellii LA 2963 F2 TG432 SL3.0 SL3.0ch05 2161747 2161927 NA 0 0 10.1094/MPMI.2001.14.5.629 t4081.M024759.1 NA t4081.T000848 3 Fruit yield, Fruit yield (kg) QTL analysis Solanum lycopersicum x Solanum habrochaites NIL,BC6S3 sub-NILs TG358 NA NA 0 0 NA 0 0 13.42 10.1534/g3.113.007195 NA NA t4081.T000849 ant3.2 4 Total anther length QTL analysis Solanum pimpinellifolium (Jusl.) Mill. (LA1237) x Solanum pimpinellifolium (Jusl.) Mill. (LA1581) F2 TG411 NA NA 0 0 NA 0 0 5.07 12019247 NA NA t4081.T000850 fpi3.1 4 Flowers per inflorescence QTL analysis Solanum pimpinellifolium (Jusl.) Mill. (LA1237) x Solanum pimpinellifolium (Jusl.) Mill. (LA1581) F2 TG411 NA NA 0 0 NA 0 0 4.8 12019247 NA NA t4081.T000851 ste11.2 4 Anther sterile length QTL analysis Solanum pimpinellifolium (Jusl.) Mill. (LA1237) x Solanum pimpinellifolium (Jusl.) Mill. (LA1581) F2 TG400 NA NA 0 0 NA 0 0 3.81 12019247 NA NA t4081.T000852 ste3.2 4 Anther sterile length QTL analysis Solanum pimpinellifolium (Jusl.) Mill. (LA1237) x Solanum pimpinellifolium (Jusl.) Mill. (LA1581) F2 TG129 NA NA 0 0 NA 0 0 4.12 12019247 NA NA t4081.T000853 sty8.1 4 Style length QTL analysis Solanum pimpinellifolium (Jusl.) Mill. (LA1237) x Solanum pimpinellifolium (Jusl.) Mill. (LA1581) F2 TG330 NA NA 0 0 NA 0 0 5.84 12019247 NA NA t4081.T000854 fd1.1 3 Fruit diameter, Fruit diameter (FD) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG273 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000854 fd1.1 4 Fruit diameter, Fruit diameter (FD) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG273 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000855 fd1.2 3 Fruit diameter, Fruit diameter (FD) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG125 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000855 fd1.2 4 Fruit diameter, Fruit diameter (FD) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG125 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000856 fd11.1 3 Fruit diameter, Fruit diameter (FD) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 I2 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000856 fd11.1 4 Fruit diameter, Fruit diameter (FD) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 I2 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000857 fd2.1 3 Fruit diameter, Fruit diameter (FD) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG167 NA NA 0 0 NA 0 0 11333249 t4081.M024845.1 NA t4081.T000857 fd2.1 4 Fruit diameter, Fruit diameter (FD) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG167 NA NA 0 0 NA 0 0 11333249 t4081.M024845.1 NA t4081.T000858 fd3.1 3 Fruit diameter, Fruit diameter (FD) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG246 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000858 fd3.1 4 Fruit diameter, Fruit diameter (FD) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG246 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000859 fd4.1 3 Fruit diameter, Fruit diameter (FD) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 CT178 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000859 fd4.1 4 Fruit diameter, Fruit diameter (FD) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 CT178 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000860 fd7.1 3 Fruit diameter, Fruit diameter (FD) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG20A NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000860 fd7.1 4 Fruit diameter, Fruit diameter (FD) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG20A NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000861 fl1.1 3 Fruit length, Fruit length (FL) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG125 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000861 fl1.1 4 Fruit length, Fruit length (FL) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG125 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000862 fl1.2 3 Fruit length, Fruit length (FL) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG273 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000862 fl1.2 4 Fruit length, Fruit length (FL) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG273 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000863 fl11.1 3 Fruit length, Fruit length (FL) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG36 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000863 fl11.1 4 Fruit length, Fruit length (FL) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG36 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000864 fl2.1 3 Fruit length, Fruit length (FL) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG167 NA NA 0 0 NA 0 0 11333249 t4081.M024845.1 NA t4081.T000864 fl2.1 4 Fruit length, Fruit length (FL) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG167 NA NA 0 0 NA 0 0 11333249 t4081.M024845.1 NA t4081.T000865 fl3.1 3 Fruit length, Fruit length (FL) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG246 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000865 fl3.1 4 Fruit length, Fruit length (FL) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG246 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000866 fl4.1 3 Fruit length, Fruit length (FL) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 CT178 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000866 fl4.1 4 Fruit length, Fruit length (FL) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 CT178 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000867 fl9.1 3 Fruit length, Fruit length (FL) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG551 SL3.0 SL3.0ch09 66583192 66583504 NA 0 0 11333249 t4081.M021357.1 NA t4081.T000867 fl9.1 4 Fruit length, Fruit length (FL) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG551 SL3.0 SL3.0ch09 66583192 66583504 NA 0 0 11333249 t4081.M021357.1 NA t4081.T000868 fs11.1 4 Fruit shape index, Fruit shape index (FSI) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 I2 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000869 fw1.1 3 Fruit weight, Fruit weight (FW) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG125 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000869 fw1.1 4 Fruit weight, Fruit weight (FW) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG125 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000870 fw1.2 3 Fruit weight, Fruit weight (FW) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG273 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000870 fw1.2 4 Fruit weight, Fruit weight (FW) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG273 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000871 fw11.3 3 Fruit weight, Fruit weight (FW) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG36 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000871 fw11.3 4 Fruit weight, Fruit weight (FW) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG36 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000872 fw2.1 3 Fruit weight, Fruit weight (FW) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG337 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000872 fw2.1 4 Fruit weight, Fruit weight (FW) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG337 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000873 fw2.2 3 Fruit weight, Fruit weight (FW) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG167 NA NA 0 0 NA 0 0 11333249 t4081.M024845.1 NA t4081.T000873 fw2.2 4 Fruit weight, Fruit weight (FW) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG167 NA NA 0 0 NA 0 0 11333249 t4081.M024845.1 NA t4081.T000874 fw3.1 3 Fruit weight, Fruit weight (FW) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG246 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000874 fw3.1 4 Fruit weight, Fruit weight (FW) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG246 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000875 lcn11.1 4 Locule number, Locule number (LCN) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 I2 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000876 lcn2.1 4 Locule number, Locule number (LCN) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG337 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000877 lcn2.2 4 Locule number, Locule number (LCN) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG167 NA NA 0 0 NA 0 0 11333249 t4081.M024845.1 NA t4081.T000878 nsf1.1 4 Seed number, No. of seeds per fruit (NSF) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG125 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000879 nsf11.1 4 Seed number, No. of seeds per fruit (NSF) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG36 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000880 sw1.3 4 Hundred-seed weight, Hundred-seed weight (SW) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG59 SL3.0 SL3.0ch01 85073046 85073362 NA 0 0 11333249 t4081.M021307.1 NA t4081.T000881 sw2.1 4 Hundred-seed weight, Hundred-seed weight (SW) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG469 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000882 sw2.5 4 Hundred-seed weight, Hundred-seed weight (SW) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 TG167 NA NA 0 0 NA 0 0 11333249 t4081.M024845.1 NA t4081.T000883 sw4.1 4 Hundred-seed weight, Hundred-seed weight (SW) QTL analysis Solanum pimpinellifolium LA1589 x Solanum esculentum var. Giant Heirloom F2 CT157 NA NA 0 0 NA 0 0 11333249 NA NA t4081.T000884 sov1 4 Fruit shape, Fruit shape index.1.Ratio between the maximum height and maximum width. QTL analysis T1693 x YP (09S95) F2 11EP11 SL3.0 SL3.0ch10 57343731 57343875 NA 0 0 10.1038/hdy.2013.45 t4081.M021847.1 NA t4081.T000885 sov2 4 Fruit shape, Fruit shape index.1.Ratio between the maximum height and maximum width. QTL analysis T1693 x YP (09S95) F2 12EP178 NA NA 0 0 NA 0 0 10.1038/hdy.2013.45 t4081.M021849.1 NA t4081.T000886 CRTISO 4 Fruit color, be-ta carotene and Xanthophylls production (tangerine gene) QTL analysis tangerine mutant LA3183 (tangerine3183) x introgression line IL 10-2 F2 CT57 NA NA 0 0 NA 0 0 11884678 t4081.M021619.1 NA t4081.T001020 SLA773077 4 Fruit weight GWAS 162 tomato accessions accessions NA 1 65810000 0 0 0 4.76e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001021 SLA802093 4 Fruit weight GWAS 162 tomato accessions accessions NA 1 77270000 0 0 0 0.0003554 10.1038/s41438-021-00638-4 NA NA t4081.T001022 SLA790460 4 Fruit weight GWAS 162 tomato accessions accessions NA 2 35190000 0 0 0 0.0001787 10.1038/s41438-021-00638-4 NA NA t4081.T001023 SLA773357 4 Fruit weight GWAS 162 tomato accessions accessions NA 2 44070000 0 0 0 1.08e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001024 SLA794277 4 Fruit width GWAS 162 tomato accessions accessions NA 2 34840000 0 0 0 3.87e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001025 SLA773357 4 Fruit width GWAS 162 tomato accessions accessions NA 2 44070000 0 0 0 3e-07 10.1038/s41438-021-00638-4 NA NA t4081.T001026 SLA805140 4 Fruit width GWAS 162 tomato accessions accessions NA 3 55040000 0 0 0 0.0002758 10.1038/s41438-021-00638-4 NA NA t4081.T001027 SLA801003 5 Fruit height GWAS 162 tomato accessions accessions NA 8 47360000 0 0 0 2e-07 10.1038/s41438-021-00638-4 NA NA t4081.T001028 SLA814454 5 Fruit shape GWAS 162 tomato accessions accessions NA 2 47190000 0 0 0 6.7e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001029 SLA813666 5 Fruit shape GWAS 162 tomato accessions accessions NA 4 54560000 0 0 0 6.31e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001030 SLA814924 5 Fruit shape GWAS 162 tomato accessions accessions NA 12 63420000 0 0 0 5e-07 10.1038/s41438-021-00638-4 NA NA t4081.T001031 SLA805176 5 Pericarp thickness GWAS 162 tomato accessions accessions NA 2 35890000 0 0 0 0.0002759 10.1038/s41438-021-00638-4 NA NA t4081.T001032 SLA769530 5 Pericarp thickness GWAS 162 tomato accessions accessions NA 9 890000 0 0 0 2.79e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001033 SLA773357 5 Locule number GWAS 162 tomato accessions accessions NA 2 44070000 0 0 0 < 0.0000001 10.1038/s41438-021-00638-4 NA NA t4081.T001034 SLA811728 5 Locule number GWAS 162 tomato accessions accessions NA 3 55560000 0 0 0 0.0003184 10.1038/s41438-021-00638-4 NA NA t4081.T001035 SLA795305 5 Locule number GWAS 162 tomato accessions accessions NA 10 59320000 0 0 0 0.0001917 10.1038/s41438-021-00638-4 NA NA t4081.T001036 SLA812628 5 Brix GWAS 162 tomato accessions accessions NA 9 62640000 0 0 0 3.95e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001037 SLA790460 4 Fruit weight GWAS 162 tomato accessions accessions NA 2 35190000 0 0 0 1.1e-06 10.1038/s41438-021-00638-4 NA NA t4081.T001038 SLA796789 4 Fruit weight GWAS 162 tomato accessions accessions NA 4 2390000 0 0 0 < 0.0000001 10.1038/s41438-021-00638-4 NA NA t4081.T001039 SLA769857 4 Fruit weight GWAS 162 tomato accessions accessions NA 8 56890000 0 0 0 < 0.0000001 10.1038/s41438-021-00638-4 NA NA t4081.T001040 SLA773077 4 Fruit width GWAS 162 tomato accessions accessions NA 1 65810000 0 0 0 0.0003581 10.1038/s41438-021-00638-4 NA NA t4081.T001041 SLA773357 4 Fruit width GWAS 162 tomato accessions accessions NA 2 44070000 0 0 0 0.0002005 10.1038/s41438-021-00638-4 NA NA t4081.T001042 SLA807083 4 Fruit width GWAS 162 tomato accessions accessions NA 9 160000 0 0 0 0.0001966 10.1038/s41438-021-00638-4 NA NA t4081.T001043 SLA781898 4 Fruit width GWAS 162 tomato accessions accessions NA 12 1840000 0 0 0 0.0001561 10.1038/s41438-021-00638-4 NA NA t4081.T001044 SLA802669 4 Fruit width GWAS 162 tomato accessions accessions NA 12 65830000 0 0 0 0.0003636 10.1038/s41438-021-00638-4 NA NA t4081.T001045 SLA770301 5 Fruit height GWAS 162 tomato accessions accessions NA 4 1210000 0 0 0 0.0002059 10.1038/s41438-021-00638-4 NA NA t4081.T001046 SLA798303 5 Fruit height GWAS 162 tomato accessions accessions NA 4 2980000 0 0 0 0.000296 10.1038/s41438-021-00638-4 NA NA t4081.T001047 SLA801003 5 Fruit height GWAS 162 tomato accessions accessions NA 8 47360000 0 0 0 0.0002787 10.1038/s41438-021-00638-4 NA NA t4081.T001048 SLA788494 5 Fruit shape GWAS 162 tomato accessions accessions NA 3 850000 0 0 0 6.26e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001049 SLA775228 5 Pericarp thickness GWAS 162 tomato accessions accessions NA 2 50740000 0 0 0 0.0004428 10.1038/s41438-021-00638-4 NA NA t4081.T001050 SLA790046 5 Pericarp thickness GWAS 162 tomato accessions accessions NA 12 62590000 0 0 0 0.0004161 10.1038/s41438-021-00638-4 NA NA t4081.T001051 SLA802459 5 Locule number GWAS 162 tomato accessions accessions NA 6 36010000 0 0 0 0.0001617 10.1038/s41438-021-00638-4 NA NA t4081.T001052 SLA795305 5 Locule number GWAS 162 tomato accessions accessions NA 10 59320000 0 0 0 6.5e-06 10.1038/s41438-021-00638-4 NA NA t4081.T001053 SLA770638 5 Fruit firmness GWAS 162 tomato accessions accessions NA 2 36560000 0 0 0 0.0004831 10.1038/s41438-021-00638-4 NA NA t4081.T001054 SLA794291 5 Fruit firmness GWAS 162 tomato accessions accessions NA 4 55170000 0 0 0 0.0001228 10.1038/s41438-021-00638-4 NA NA t4081.T001055 SLA786548 5 Fruit firmness GWAS 162 tomato accessions accessions NA 8 48400000 0 0 0 0.0001178 10.1038/s41438-021-00638-4 NA NA t4081.T001056 SLA770985 4 Fruit weight GWAS 162 tomato accessions accessions NA 10 62240000 0 0 0 0.0002492 10.1038/s41438-021-00638-4 NA NA t4081.T001057 SLA773077 4 Fruit width GWAS 162 tomato accessions accessions NA 1 65810000 0 0 0 8.98e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001058 SLA773357 4 Fruit width GWAS 162 tomato accessions accessions NA 2 44070000 0 0 0 0.0004138 10.1038/s41438-021-00638-4 NA NA t4081.T001059 SLA770301 5 Fruit height GWAS 162 tomato accessions accessions NA 4 1210000 0 0 0 0.0004259 10.1038/s41438-021-00638-4 NA NA t4081.T001060 SLA798303 5 Fruit height GWAS 162 tomato accessions accessions NA 4 2980000 0 0 0 < 0.0000001 10.1038/s41438-021-00638-4 NA NA t4081.T001061 SLA802459 5 Locule number GWAS 162 tomato accessions accessions NA 6 36010000 0 0 0 0.0001102 10.1038/s41438-021-00638-4 NA NA t4081.T001062 SLA770638 5 Fruit firmness GWAS 162 tomato accessions accessions NA 2 36560000 0 0 0 4.6e-06 10.1038/s41438-021-00638-4 NA NA t4081.T001063 SLA773077 4 Fruit weight GWAS 162 tomato accessions accessions NA 1 65810000 0 0 0 0.0002271 10.1038/s41438-021-00638-4 NA NA t4081.T001064 SLA802093 4 Fruit weight GWAS 162 tomato accessions accessions NA 1 77270000 0 0 0 0.0004674 10.1038/s41438-021-00638-4 NA NA t4081.T001065 SLA790460 4 Fruit weight GWAS 162 tomato accessions accessions NA 2 35190000 0 0 0 0.0001411 10.1038/s41438-021-00638-4 NA NA t4081.T001066 SLA773357 4 Fruit weight GWAS 162 tomato accessions accessions NA 2 44070000 0 0 0 1.9e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001067 SLA796789 4 Fruit weight GWAS 162 tomato accessions accessions NA 4 2390000 0 0 0 5.47e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001068 SLA769857 4 Fruit weight GWAS 162 tomato accessions accessions NA 8 56890000 0 0 0 0.0001049 10.1038/s41438-021-00638-4 NA NA t4081.T001069 SLA770985 4 Fruit weight GWAS 162 tomato accessions accessions NA 10 62240000 0 0 0 0.000161 10.1038/s41438-021-00638-4 NA NA t4081.T001070 SLA773077 4 Fruit width GWAS 162 tomato accessions accessions NA 1 65810000 0 0 0 7e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001071 SLA794277 4 Fruit width GWAS 162 tomato accessions accessions NA 2 34840000 0 0 0 2.34e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001072 SLA773357 4 Fruit width GWAS 162 tomato accessions accessions NA 2 44070000 0 0 0 2.2e-06 10.1038/s41438-021-00638-4 NA NA t4081.T001073 SLA805140 4 Fruit width GWAS 162 tomato accessions accessions NA 3 55040000 0 0 0 0.0004037 10.1038/s41438-021-00638-4 NA NA t4081.T001074 SLA807083 4 Fruit width GWAS 162 tomato accessions accessions NA 9 160000 0 0 0 0.0001213 10.1038/s41438-021-00638-4 NA NA t4081.T001075 SLA781898 4 Fruit width GWAS 162 tomato accessions accessions NA 12 1840000 0 0 0 0.0001196 10.1038/s41438-021-00638-4 NA NA t4081.T001076 SLA802669 4 Fruit width GWAS 162 tomato accessions accessions NA 12 65830000 0 0 0 8.1e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001077 SLA770301 5 Fruit height GWAS 162 tomato accessions accessions NA 4 1210000 0 0 0 0.0001397 10.1038/s41438-021-00638-4 NA NA t4081.T001078 SLA798303 5 Fruit height GWAS 162 tomato accessions accessions NA 4 2980000 0 0 0 3.5e-06 10.1038/s41438-021-00638-4 NA NA t4081.T001079 SLA814454 5 Fruit shape GWAS 162 tomato accessions accessions NA 2 47190000 0 0 0 < 0.0000001 10.1038/s41438-021-00638-4 NA NA t4081.T001080 SLA788494 5 Fruit shape GWAS 162 tomato accessions accessions NA 3 850000 0 0 0 0.000335 10.1038/s41438-021-00638-4 NA NA t4081.T001081 SLA813666 5 Fruit shape GWAS 162 tomato accessions accessions NA 4 54560000 0 0 0 < 0.0000001 10.1038/s41438-021-00638-4 NA NA t4081.T001082 SLA814924 5 Fruit shape GWAS 162 tomato accessions accessions NA 12 63420000 0 0 0 < 0.0000001 10.1038/s41438-021-00638-4 NA NA t4081.T001083 SLA805176 5 Pericarp thickness GWAS 162 tomato accessions accessions NA 2 35890000 0 0 0 0.0002181 10.1038/s41438-021-00638-4 NA NA t4081.T001084 SLA775228 5 Pericarp thickness GWAS 162 tomato accessions accessions NA 2 50740000 0 0 0 0.0002261 10.1038/s41438-021-00638-4 NA NA t4081.T001085 SLA769530 5 Pericarp thickness GWAS 162 tomato accessions accessions NA 9 890000 0 0 0 0.0002705 10.1038/s41438-021-00638-4 NA NA t4081.T001086 SLA790046 5 Pericarp thickness GWAS 162 tomato accessions accessions NA 12 62590000 0 0 0 0.0004021 10.1038/s41438-021-00638-4 NA NA t4081.T001087 SLA773357 5 Locule number GWAS 162 tomato accessions accessions NA 2 44070000 0 0 0 9e-07 10.1038/s41438-021-00638-4 NA NA t4081.T001088 SLA811728 5 Locule number GWAS 162 tomato accessions accessions NA 3 55560000 0 0 0 1.63e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001089 SLA770638 5 Fruit firmness GWAS 162 tomato accessions accessions NA 2 36560000 0 0 0 5.02e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001090 SLA794291 5 Fruit firmness GWAS 162 tomato accessions accessions NA 4 55170000 0 0 0 8.32e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001091 SLA786548 5 Fruit firmness GWAS 162 tomato accessions accessions NA 8 48400000 0 0 0 0.0001857 10.1038/s41438-021-00638-4 NA NA t4081.T001092 SLA812628 5 Brix GWAS 162 tomato accessions accessions NA 9 62640000 0 0 0 5.94e-05 10.1038/s41438-021-00638-4 NA NA t4081.T001093 Rcm6 1 bacterial canker resistance BSA-seq 909 F2 individuals F2 Rcm6-9 NA 6 37240000 0 6 41150000 0 < 0.05 10.3389/fpls.2021.809959 NA NA t4081.T001094 cm2.1 5 cuticle mass multiple QTL mapping RIL recombinant inbred line (F8) solcap23851 NA 0 0 0 0 56.9 - 65.2 2.8 0.989 10.1038/s41438-021-00548-5 NA NA t4081.T001095 cm2.2 5 cuticle mass multiple QTL mapping RIL recombinant inbred line (F8) solcap42471 NA 0 0 0 0 88.8 - 122.7 3.67 0.997 10.1038/s41438-021-00548-5 NA NA t4081.T001096 cm3.1 5 cuticle mass multiple QTL mapping RIL recombinant inbred line (F8) solcap41353 NA 0 0 0 0 39.4 - 45.9 4.65 1 10.1038/s41438-021-00548-5 NA NA t4081.T001097 cm3.2 5 cuticle mass multiple QTL mapping RIL recombinant inbred line (F8) solcap62180 NA 0 0 0 0 107.3 - 114.5 6.85 1 10.1038/s41438-021-00548-5 NA NA t4081.T001098 cm4.1 5 cuticle mass multiple QTL mapping RIL recombinant inbred line (F8) solcap3108 NA 0 0 0 0 74 - 83.3 3.61 0.998 10.1038/s41438-021-00548-5 NA NA t4081.T001099 cm5.1 5 cuticle mass multiple QTL mapping RIL recombinant inbred line (F8) solcap23797 NA 0 0 0 0 18.6 - 42.3 3.04 0.992 10.1038/s41438-021-00548-5 NA NA t4081.T001100 cm5.2 5 cuticle mass multiple QTL mapping RIL recombinant inbred line (F8) solcap37808 NA 0 0 0 0 116.8 - 147.1 3.66 0.998 10.1038/s41438-021-00548-5 NA NA t4081.T001101 cm10.1 5 cuticle mass multiple QTL mapping RIL recombinant inbred line (F8) solcap46305 NA 0 0 0 0 9.4 - 30.1 3.94 0.999 10.1038/s41438-021-00548-5 NA NA t4081.T001102 cm10.2 5 cuticle mass multiple QTL mapping RIL recombinant inbred line (F8) solcap14879 NA 0 0 0 0 78.7 - 91.1 3.08 0.995 10.1038/s41438-021-00548-5 NA NA t4081.T001103 cm11.2 5 cuticle mass multiple QTL mapping RIL recombinant inbred line (F8) solcap100974 NA 0 0 0 0 125.3 - 129.4 6.02 1 10.1038/s41438-021-00548-5 NA NA t4081.T001104 cm12.1 5 cuticle mass multiple QTL mapping RIL recombinant inbred line (F8) solcap1497 NA 0 0 0 0 39.4 - 44.1 3.84 0.998 10.1038/s41438-021-00548-5 NA NA t4081.T001105 ph1.1 5 percentage of phenolics multiple QTL mapping RIL recombinant inbred line (F8) solcap457 NA 0 0 0 0 64.6 - 117 11.37 1 10.1038/s41438-021-00548-5 NA NA t4081.T001106 wx1.1 5 percentage of waxes multiple QTL mapping RIL recombinant inbred line (F8) solcap25914 NA 0 0 0 0 89.3 - 96.5 3.54 0.996 10.1038/s41438-021-00548-5 NA NA t4081.T001107 cu1.1 5 percentage of cutin multiple QTL mapping RIL recombinant inbred line (F8) solcap25922 NA 0 0 0 0 82.3 - 103.8 3.38 0.996 10.1038/s41438-021-00548-5 NA NA t4081.T001108 wx3.1 5 percentage of waxes multiple QTL mapping RIL recombinant inbred line (F8) solcap62270 NA 0 0 0 0 113 - 114.5 3.13 0.992 10.1038/s41438-021-00548-5 NA NA t4081.T001109 ph5.1 5 percentage of phenolics multiple QTL mapping RIL recombinant inbred line (F8) solcap49234 NA 0 0 0 0 15.5 - 24.3 4.36 1 10.1038/s41438-021-00548-5 NA NA t4081.T001110 ph5.2 5 percentage of phenolics multiple QTL mapping RIL recombinant inbred line (F8) solcap37562 NA 0 0 0 0 126.6 - 130.9 2.9 0.991 10.1038/s41438-021-00548-5 NA NA t4081.T001111 ph7.1 5 percentage of phenolics multiple QTL mapping RIL recombinant inbred line (F8) solcap68044 NA 0 0 0 0 34.9 - 42.2 3.39 0.998 10.1038/s41438-021-00548-5 NA NA t4081.T001112 ph7.2 5 percentage of phenolics multiple QTL mapping RIL recombinant inbred line (F8) solcap5853 NA 0 0 0 0 64.9 - 67.5 3.02 0.993 10.1038/s41438-021-00548-5 NA NA t4081.T001113 ph8.1 5 percentage of phenolics multiple QTL mapping RIL recombinant inbred line (F8) solcap48550 NA 0 0 0 0 64.2 - 74.4 5.64 1 10.1038/s41438-021-00548-5 NA NA t4081.T001114 wx10.1 5 percentage of waxes multiple QTL mapping RIL recombinant inbred line (F8) snp112a NA 0 0 0 0 78.7 - 88.9 3.07 0.992 10.1038/s41438-021-00548-5 NA NA t4081.T001115 ph12.2 5 percentage of phenolics multiple QTL mapping RIL recombinant inbred line (F8) solcap55706 NA 0 0 0 0 107 - 119.7 5.4 1 10.1038/s41438-021-00548-5 NA NA t4081.T001116 wx12.1 5 percentage of waxes multiple QTL mapping RIL recombinant inbred line (F8) solcap45816 NA 0 0 0 0 14.3 - 18.9 5.84 1 10.1038/s41438-021-00548-5 NA NA t4081.T001117 wx12.2 5 percentage of waxes multiple QTL mapping RIL recombinant inbred line (F8) solcap55712 NA 0 0 0 0 100.2 - 114.2 3.48 0.997 10.1038/s41438-021-00548-5 NA NA t4081.T001118 cm1.1 5 cuticle mass multiple QTL mapping IL inbred line solcap59975 NA 0 0 0 0 50.3 - 54.8 10.1038/s41438-021-00548-5 NA NA t4081.T001119 cm1.2 5 cuticle mass multiple QTL mapping IL inbred line solcap48181 NA 0 0 0 0 194.6 - 222.2 10.1038/s41438-021-00548-5 NA NA t4081.T001120 cm2.1 5 cuticle mass multiple QTL mapping IL inbred line solcap23851 NA 0 0 0 0 56.9 - 65.2 10.1038/s41438-021-00548-5 NA NA t4081.T001121 cm2.2 5 cuticle mass multiple QTL mapping IL inbred line solcap42471 NA 0 0 0 0 88.8 - 122.7 10.1038/s41438-021-00548-5 NA NA t4081.T001122 cm3.1 5 cuticle mass multiple QTL mapping IL inbred line solcap41353 NA 0 0 0 0 39.4 - 45.9 10.1038/s41438-021-00548-5 NA NA t4081.T001123 cm3.2 5 cuticle mass multiple QTL mapping IL inbred line solcap62180 NA 0 0 0 0 107.3 - 114.5 10.1038/s41438-021-00548-5 NA NA t4081.T001124 cm4.1 5 cuticle mass multiple QTL mapping IL inbred line solcap3108 NA 0 0 0 0 74 - 83.3 10.1038/s41438-021-00548-5 NA NA t4081.T001125 cm5.1 5 cuticle mass multiple QTL mapping IL inbred line solcap23797 NA 0 0 0 0 18.6 - 42.3 10.1038/s41438-021-00548-5 NA NA t4081.T001126 cm5.2 5 cuticle mass multiple QTL mapping IL inbred line solcap37808 NA 0 0 0 0 116.8 - 147.1 10.1038/s41438-021-00548-5 NA NA t4081.T001127 cm7.1 5 cuticle mass multiple QTL mapping IL inbred line NA 0 0 0 0 89.7 - 115.4 10.1038/s41438-021-00548-5 NA NA t4081.T001128 cm10.1 5 cuticle mass multiple QTL mapping IL inbred line solcap46305 NA 0 0 0 0 9.4 - 30.1 10.1038/s41438-021-00548-5 NA NA t4081.T001129 cm10.2 5 cuticle mass multiple QTL mapping IL inbred line solcap14879 NA 0 0 0 0 78.7 - 91.1 10.1038/s41438-021-00548-5 NA NA t4081.T001130 cm11.1 5 cuticle mass multiple QTL mapping IL inbred line NA 0 0 0 0 58.1 - 67.3 10.1038/s41438-021-00548-5 NA NA t4081.T001131 cm11.2 5 cuticle mass multiple QTL mapping IL inbred line solcap100974 NA 0 0 0 0 125.3 - 129.4 10.1038/s41438-021-00548-5 NA NA t4081.T001132 cm12.1 5 cuticle mass multiple QTL mapping IL inbred line solcap1497 NA 0 0 0 0 39.4 - 44.1 10.1038/s41438-021-00548-5 NA NA t4081.T001133 ph1.1 5 percentage of phenolics multiple QTL mapping IL inbred line solcap457 NA 0 0 0 0 64.6 - 117 10.1038/s41438-021-00548-5 NA NA t4081.T001134 wx3.1 5 percentage of waxes multiple QTL mapping IL inbred line solcap62270 NA 0 0 0 0 113 - 114.5 10.1038/s41438-021-00548-5 NA NA t4081.T001135 wx3.2 5 percentage of waxes multiple QTL mapping IL inbred line solcap61411 NA 0 0 0 0 134.5 - 145 10.1038/s41438-021-00548-5 NA NA t4081.T001136 ph4.1 5 percentage of phenolics multiple QTL mapping IL inbred line snp302a NA 0 0 0 0 48.2 - 81.2 10.1038/s41438-021-00548-5 NA NA t4081.T001137 wx4.1 5 percentage of waxes multiple QTL mapping IL inbred line NA 0 0 0 0 48.2 - 102.4 10.1038/s41438-021-00548-5 NA NA t4081.T001138 ph7.1 5 percentage of phenolics multiple QTL mapping IL inbred line solcap68044 NA 0 0 0 0 34.9 - 42.2 10.1038/s41438-021-00548-5 NA NA t4081.T001139 ph7.2 5 percentage of phenolics multiple QTL mapping IL inbred line solcap5853 NA 0 0 0 0 64.9 - 67.5 10.1038/s41438-021-00548-5 NA NA t4081.T001140 ph8.1 5 percentage of phenolics multiple QTL mapping IL inbred line solcap48550 NA 0 0 0 0 64.2 - 74.4 10.1038/s41438-021-00548-5 NA NA t4081.T001141 wx10.1 5 percentage of waxes multiple QTL mapping IL inbred line snp112a NA 0 0 0 0 78.7 - 88.9 10.1038/s41438-021-00548-5 NA NA t4081.T001142 cu10.1 5 percentage of cutin multiple QTL mapping IL inbred line snp112a NA 0 0 0 0 71.5 - 95.9 10.1038/s41438-021-00548-5 NA NA t4081.T001143 ps10.1 5 percentage of polysaccharides multiple QTL mapping IL inbred line solcap59337 NA 0 0 0 0 78.1 - 91.1 10.1038/s41438-021-00548-5 NA NA t4081.T001144 wx11.1 5 percentage of waxes multiple QTL mapping IL inbred line NA 0 0 0 0 58.1 - 67.3 10.1038/s41438-021-00548-5 NA NA t4081.T001145 wx11.2 5 percentage of waxes multiple QTL mapping IL inbred line solcap100974 NA 0 0 0 0 125.3 - 130.7 10.1038/s41438-021-00548-5 NA NA t4081.T001146 ph12.1 5 percentage of phenolics multiple QTL mapping IL inbred line solcap1516 NA 0 0 0 0 39.4 - 44.1 10.1038/s41438-021-00548-5 NA NA t4081.T001147 ph12.2 5 percentage of phenolics multiple QTL mapping IL inbred line solcap55706 NA 0 0 0 0 107 - 119.7 10.1038/s41438-021-00548-5 NA NA t4081.T001148 wx12.1 5 percentage of waxes multiple QTL mapping IL inbred line solcap45816 NA 0 0 0 0 14.3 - 18.9 10.1038/s41438-021-00548-5 NA NA t4081.T001149 wx12.2 5 percentage of waxes multiple QTL mapping IL inbred line solcap55712 NA 0 0 0 0 100.2 - 114.2 10.1038/s41438-021-00548-5 NA NA t4081.T001150 ct2.2 5 cuticle thickness multiple QTL mapping RIL recombinant inbred line (F8) solcap42464 NA 0 0 0 0 88.8 - 122.7 3.41 0.995 10.1038/s41438-021-00548-5 NA NA t4081.T001151 ct3.2 5 cuticle thickness multiple QTL mapping RIL recombinant inbred line (F8) solcap62270 NA 0 0 0 0 111 - 114.5 4.3 1 10.1038/s41438-021-00548-5 NA NA t4081.T001152 ct4.1 5 cuticle thickness multiple QTL mapping RIL recombinant inbred line (F8) solcap24150 NA 0 0 0 0 70.6 - 81.9 3.09 0.99 10.1038/s41438-021-00548-5 NA NA t4081.T001153 ct12.1 5 cuticle thickness multiple QTL mapping RIL recombinant inbred line (F8) solcap1497 NA 0 0 0 0 36.5 - 44.1 3.15 0.994 10.1038/s41438-021-00548-5 NA NA t4081.T001154 ct2.1 5 cuticle thickness multiple QTL mapping IL inbred line solcap13530 NA 0 0 0 0 53.1 - 65.2 10.1038/s41438-021-00548-5 NA NA t4081.T001155 ct2.2 5 cuticle thickness multiple QTL mapping IL inbred line solcap42464 NA 0 0 0 0 88.8 - 122.7 10.1038/s41438-021-00548-5 NA NA t4081.T001156 ct3.1 5 cuticle thickness multiple QTL mapping IL inbred line solcap19508 NA 0 0 0 0 34.4 - 49.1 10.1038/s41438-021-00548-5 NA NA t4081.T001157 ct3.2 5 cuticle thickness multiple QTL mapping IL inbred line solcap62270 NA 0 0 0 0 111 - 114.5 10.1038/s41438-021-00548-5 NA NA t4081.T001158 ct4.1 5 cuticle thickness multiple QTL mapping IL inbred line solcap24150 NA 0 0 0 0 70.6 - 81.9 10.1038/s41438-021-00548-5 NA NA t4081.T001159 ct7.1 5 cuticle thickness multiple QTL mapping IL inbred line NA 0 0 0 0 89.7 - 115.4 10.1038/s41438-021-00548-5 NA NA t4081.T001160 ct8.1 5 cuticle thickness multiple QTL mapping IL inbred line NA 0 0 0 0 22.6 - 55.6 10.1038/s41438-021-00548-5 NA NA t4081.T001161 ct10.1 5 cuticle thickness multiple QTL mapping IL inbred line solcap46475 NA 0 0 0 0 22.2 - 27.4 10.1038/s41438-021-00548-5 NA NA t4081.T001162 ct10.2 5 cuticle thickness multiple QTL mapping IL inbred line snp112a NA 0 0 0 0 78.7 - 88.9 10.1038/s41438-021-00548-5 NA NA t4081.T001163 ct11.1 5 cuticle thickness multiple QTL mapping IL inbred line solcap28499 NA 0 0 0 0 125.3 - 138.6 10.1038/s41438-021-00548-5 NA NA t4081.T001164 ct12.1 5 cuticle thickness multiple QTL mapping IL inbred line solcap1497 NA 0 0 0 0 36.5 - 44.1 10.1038/s41438-021-00548-5 NA NA t4081.T001165 ci1.1 5 cuticle invagination multiple QTL mapping RIL recombinant inbred line (F8) solcap59975 NA 0 0 0 0 48.2 - 54.8 4.01 0.999 10.1038/s41438-021-00548-5 NA NA t4081.T001166 ci2.1 5 cuticle invagination multiple QTL mapping RIL recombinant inbred line (F8) solcap35757 NA 0 0 0 0 49.5 - 65.2 3.49 0.998 10.1038/s41438-021-00548-5 NA NA t4081.T001167 ci2.2 5 cuticle invagination multiple QTL mapping RIL recombinant inbred line (F8) solcap42471 NA 0 0 0 0 88.8 - 122.7 3.13 0.994 10.1038/s41438-021-00548-5 NA NA t4081.T001168 ci3.2 5 cuticle invagination multiple QTL mapping RIL recombinant inbred line (F8) solcap62180 NA 0 0 0 0 98.9 - 114.5 8.09 1 10.1038/s41438-021-00548-5 NA NA t4081.T001169 ci5.1 5 cuticle invagination multiple QTL mapping RIL recombinant inbred line (F8) solcap37652 NA 0 0 0 0 113.8 - 144.6 4.54 1 10.1038/s41438-021-00548-5 NA NA t4081.T001170 ci1.1 5 cuticle invagination multiple QTL mapping IL inbred line solcap59975 NA 0 0 0 0 48.2 - 54.8 10.1038/s41438-021-00548-5 NA NA t4081.T001171 ci1.2 5 cuticle invagination multiple QTL mapping IL inbred line solcap54631 NA 0 0 0 0 184.4 - 222.2 10.1038/s41438-021-00548-5 NA NA t4081.T001172 ci2.1 5 cuticle invagination multiple QTL mapping IL inbred line solcap35757 NA 0 0 0 0 49.5 - 65.2 10.1038/s41438-021-00548-5 NA NA t4081.T001173 ci2.2 5 cuticle invagination multiple QTL mapping IL inbred line solcap42471 NA 0 0 0 0 88.8 - 122.7 10.1038/s41438-021-00548-5 NA NA t4081.T001174 ci3.1 5 cuticle invagination multiple QTL mapping IL inbred line solcap41353 NA 0 0 0 0 37 - 49.1 10.1038/s41438-021-00548-5 NA NA t4081.T001175 ci3.2 5 cuticle invagination multiple QTL mapping IL inbred line solcap62180 NA 0 0 0 0 98.9 - 114.5 10.1038/s41438-021-00548-5 NA NA t4081.T001176 ci5.1 5 cuticle invagination multiple QTL mapping IL inbred line solcap37652 NA 0 0 0 0 113.8 - 144.6 10.1038/s41438-021-00548-5 NA NA t4081.T001177 ci7.1 5 cuticle invagination multiple QTL mapping IL inbred line NA 0 0 0 0 89.7 - 115.4 10.1038/s41438-021-00548-5 NA NA t4081.T001178 ci8.1 5 cuticle invagination multiple QTL mapping IL inbred line NA 0 0 0 0 22.6 - 55.6 10.1038/s41438-021-00548-5 NA NA t4081.T001179 ci10.1 5 cuticle invagination multiple QTL mapping IL inbred line solcap46475 NA 0 0 0 0 9.4 - 27.4 10.1038/s41438-021-00548-5 NA NA t4081.T001180 ci11.1 5 cuticle invagination multiple QTL mapping IL inbred line NA 0 0 0 0 125.3 - 138.6 10.1038/s41438-021-00548-5 NA NA t4081.T001181 cd8.1 5 cuticle density multiple QTL mapping RIL recombinant inbred line (F8) solcap56631 NA 0 0 0 0 11.4 - 22.6 3.53 0.998 10.1038/s41438-021-00548-5 NA NA t4081.T001182 cd2.1 5 cuticle density multiple QTL mapping IL inbred line NA 0 0 0 0 56.9 - 65.2 10.1038/s41438-021-00548-5 NA NA t4081.T001183 cd2.2 5 cuticle density multiple QTL mapping IL inbred line NA 0 0 0 0 88.8 - 122.7 10.1038/s41438-021-00548-5 NA NA t4081.T001184 cd3.1 5 cuticle density multiple QTL mapping IL inbred line solcap41353 NA 0 0 0 0 39.4 - 50.8 10.1038/s41438-021-00548-5 NA NA t4081.T001185 cd3.2 5 cuticle density multiple QTL mapping IL inbred line solcap9292 NA 0 0 0 0 100.2 - 114.5 10.1038/s41438-021-00548-5 NA NA t4081.T001186 cd5.1 5 cuticle density multiple QTL mapping IL inbred line solcap23808 NA 0 0 0 0 33.6 - 43.9 10.1038/s41438-021-00548-5 NA NA t4081.T001187 cd5.2 5 cuticle density multiple QTL mapping IL inbred line solcap141 NA 0 0 0 0 111.5 - 144.6 10.1038/s41438-021-00548-5 NA NA t4081.T001188 cd7.1 5 cuticle density multiple QTL mapping IL inbred line NA 0 0 0 0 89.7 - 115.4 10.1038/s41438-021-00548-5 NA NA t4081.T001189 cd8.2 5 cuticle density multiple QTL mapping IL inbred line solcap56791 NA 0 0 0 0 25.1 - 37 10.1038/s41438-021-00548-5 NA NA t4081.T001190 cd11.1 5 cuticle density multiple QTL mapping IL inbred line NA 0 0 0 0 33.2 - 48.7 10.1038/s41438-021-00548-5 NA NA t4081.T001191 cd11.2 5 cuticle density multiple QTL mapping IL inbred line NA 0 0 0 0 58.1 - 67.3 10.1038/s41438-021-00548-5 NA NA t4081.T001192 cd11.3 5 cuticle density multiple QTL mapping IL inbred line NA 0 0 0 0 125.3 - 138.6 10.1038/s41438-021-00548-5 NA NA t4081.T001193 fw2.3 4 fruit weight QTL-seq analysis 17S62 F2 NA 2 53274286 0 0 0 7.1e-06 10.1007/s00122-021-03902-2 NA NA t4081.T001194 fw7.1 4 fruit weight QTL-seq analysis 17S62 F2 NA 7 3204338 0 0 0 0.003 10.1007/s00122-021-03902-2 NA NA t4081.T001195 fw8.1 4 fruit weight QTL-seq analysis 17S62 F2 NA 8 55035744 0 0 0 0.05 10.1007/s00122-021-03902-2 NA NA t4081.T001196 fw2.3 4 fruit weight composite interval mapping entire F2 population F2 NA 2 52385669 0 0 0 7.36 10.1007/s00122-021-03902-2 NA NA t4081.T001197 fw7.1 4 fruit weight composite interval mapping entire F2 population F2 NA 7 4572367 0 0 0 3.72493426 10.1007/s00122-021-03902-2 NA NA t4081.T001198 fw1.1 4 fruit weight QTL-seq analysis 18S133 F2 NA 1 88338986 0 0 0 0.0006 10.1007/s00122-021-03902-2 NA NA t4081.T001199 fw5.1 4 fruit weight QTL-seq analysis 18S133 F2 NA 5 16645020 0 0 0 0.01 10.1007/s00122-021-03902-2 NA NA t4081.T001200 fw11.2 4 fruit weight QTL-seq analysis 18S133 F2 NA 11 38490484 0 0 0 0.0051 10.1007/s00122-021-03902-2 NA NA t4081.T001201 fw1.1 4 fruit weight composite interval mapping entire F2 population F2 NA 1 95911244 0 0 0 3.87331124 10.1007/s00122-021-03902-2 NA NA t4081.T001202 fw11.2 4 fruit weight composite interval mapping entire F2 population F2 NA 11 39297699 0 0 0 2.38460866 10.1007/s00122-021-03902-2 NA NA t4081.T001203 fw3.3 4 fruit weight QTL-seq analysis 18S40 F2 NA 3 68712551 0 0 0 5.5e-07 10.1007/s00122-021-03902-2 NA NA t4081.T001204 fw8.1 4 fruit weight QTL-seq analysis 18S40 F2 NA 8 58862902 0 0 0 0.004 10.1007/s00122-021-03902-2 NA NA t4081.T001205 fw12.1 4 fruit weight QTL-seq analysis 18S40 F2 NA 12 353743 0 0 0 0.01 10.1007/s00122-021-03902-2 NA NA t4081.T001206 fw3.3 4 fruit weight composite interval mapping entire F2 population F2 NA 3 66508437 0 0 0 6.993 10.1007/s00122-021-03902-2 NA NA t4081.T001207 fw8.1 4 fruit weight composite interval mapping entire F2 population F2 NA 8 64162967 0 0 0 3.693 10.1007/s00122-021-03902-2 NA NA t4081.T001208 BER3.2 6 Blossom-end rot (BER) Incidence QTL-seq analysis 2 bulks from 17S28 F2 population F2 NA 3 58000000 0 3 65000000 0 < 0.05 10.1007/s00122-021-03869-0 NA NA t4081.T001209 BER11.1 6 Blossom-end rot (BER) Incidence QTL-seq analysis 2 bulks from 17S28 F2 population F2 NA 11 48000000 0 11 54000000 0 < 0.05 10.1007/s00122-021-03869-0 NA NA t4081.T001210 BER3.2 6 Blossom-end rot (BER) Incidence linkage-based QTL mapping entire 17S28 F2 population F2 18EP727 NA 3 54214617 0 3 59891210 0 35 7.44 4.704e-08 10.1007/s00122-021-03869-0 NA NA t4081.T001211 BER4.1 6 Blossom-end rot (BER) Incidence linkage-based QTL mapping entire 17S28 F2 population F2 19EP1076 NA 4 5481420 0 4 55400792 0 32.3 3.74 0.0002101 10.1007/s00122-021-03869-0 NA NA t4081.T001212 BER11.1 6 Blossom-end rot (BER) Incidence linkage-based QTL mapping entire 17S28 F2 population F2 18EP879 NA 11 48131615 0 11 52123165 0 29.1 8.22 8.059e-09 10.1007/s00122-021-03869-0 NA NA t4081.T001213 BER11.1 6 Blossom-end rot (BER) Incidence linkage-based QTL mapping 18S243 BC1 population backcross population 18EP879 NA 11 50569217 0 11 54182901 0 22 4.62 4.773e-06 10.1007/s00122-021-03869-0 NA NA t4081.T001214 BER3.1 6 Blossom-end rot (BER) Visual trait linkage-based QTL mapping 20S166 F2 population F2 20EP1012 NA 3 47418933 0 3 53495792 0 6 7 1.26e-07 10.1007/s00122-021-03869-0 NA NA t4081.T001215 BER4.1 6 Blossom-end rot (BER) Visual trait linkage-based QTL mapping 20S166 F2 population F2 20EP194 NA 4 49843412 0 4 55400792 0 60 8.85 1.946e-09 10.1007/s00122-021-03869-0 NA NA t4081.T001216 BER3.2 6 Blossom-end rot (BER) Incidence linkage-based QTL mapping 20S74 population F3:4 19EP261 NA 3 58308917 0 3 59891210 0 14 10.1007/s00122-021-03869-0 NA NA t4081.T001217 BER11.1 6 Blossom-end rot (BER) Incidence linkage-based QTL mapping 19S499 population F3:4 20EP385 NA 11 52123165 0 11 53258120 0 8 10.1007/s00122-021-03869-0 NA NA t4081.T001218 Cyc-B 5 high β-carotene naïve association analysis larger population accessions NA 6 43564423 0 0 0 3.74e-35 10.1002/tpg2.20085 NA NA t4081.T001219 Cyc-B 5 high β-carotene naïve association analysis larger population accessions NA 6 43564528 0 0 0 3.74e-35 10.1002/tpg2.20085 NA NA t4081.T001220 Cyc-B 5 high β-carotene nonparametric association analys larger population accessions NA 6 43564423 0 0 0 < 2.2E-16 10.1002/tpg2.20085 NA NA t4081.T001221 Cyc-B 5 high β-carotene nonparametric association analys larger population accessions NA 6 43564528 0 0 0 < 2.2E-16 10.1002/tpg2.20085 NA NA t4081.T001222 Cyc-B 5 high β-carotene association analysis with a corr larger population accessions NA 6 43564423 0 0 0 0.000864 10.1002/tpg2.20085 NA NA t4081.T001223 Cyc-B 5 high β-carotene association analysis with a corr larger population accessions NA 6 43564528 0 0 0 0.000864 10.1002/tpg2.20085 NA NA t4081.T001224 Cyc-B 5 high β-carotene nonparametric association analys smaller core population accessions NA 6 43564423 0 0 0 4.32e-08 10.1002/tpg2.20085 NA NA t4081.T001225 Cyc-B 5 high β-carotene nonparametric association analys smaller core population accessions NA 6 43564528 0 0 0 4.32e-08 10.1002/tpg2.20085 NA NA t4081.T001226 Cyc-B 5 high β-carotene naïve association analysis smaller core population accessions NA 6 43564423 0 0 0 7.4e-10 10.1002/tpg2.20085 NA NA t4081.T001227 Cyc-B 5 high β-carotene naïve association analysis smaller core population accessions NA 6 43564528 0 0 0 7.4e-10 10.1002/tpg2.20085 NA NA t4081.T001228 Cyc-B 5 high β-carotene association analysis with a corr smaller core population accessions NA 6 43564423 0 0 0 0.01 10.1002/tpg2.20085 NA NA t4081.T001229 Cyc-B 5 high β-carotene association analysis with a corr smaller core population accessions NA 6 43564528 0 0 0 0.01 10.1002/tpg2.20085 NA NA t4081.T001230 association_on_chr9 5 ASA content regional haplotype-based associa 163 tomato accessions accessions rs09_67045070 NA 9 66929618 0 9 67391497 0 10.1093/hr/uhab009 NA NA t4081.T001231 association_on_chr10 5 Asparagine content regional haplotype-based associa 163 tomato accessions accessions rs10_61023555 NA 10 60606622 0 10 61027927 0 10.1093/hr/uhab009 NA NA t4081.T001232 association_on_chr11 5 Asparagine content regional haplotype-based associa 163 tomato accessions accessions rs11_4242564 NA 11 4213379 0 11 4265295 0 10.1093/hr/uhab009 NA NA t4081.T001233 association_on_chr4 5 Aspartate content regional haplotype-based associa 163 tomato accessions accessions rs04_60724790 NA 4 60367116 0 4 61131508 0 10.1093/hr/uhab009 NA NA t4081.T001234 association_on_chr2 5 Brix content regional haplotype-based associa 163 tomato accessions accessions rs02_47218316 NA 2 47014198 0 2 47222747 0 10.1093/hr/uhab009 NA NA t4081.T001235 association_on_chr4 5 Brix content regional haplotype-based associa 163 tomato accessions accessions rs04_993580 NA 4 845831 0 4 1166436 0 10.1093/hr/uhab009 NA NA t4081.T001236 association_on_chr5 5 Brix content regional haplotype-based associa 163 tomato accessions accessions rs05_60837144 NA 5 60575012 0 5 61009554 0 10.1093/hr/uhab009 NA NA t4081.T001237 association_on_chr6 5 Brix content regional haplotype-based associa 163 tomato accessions accessions rs06_43589609 NA 6 43182556 0 6 44112996 0 10.1093/hr/uhab009 NA NA t4081.T001238 association_on_chr8 5 Brix content regional haplotype-based associa 163 tomato accessions accessions rs08_64194956 NA 8 63846570 0 8 64242138 0 10.1093/hr/uhab009 NA NA t4081.T001239 association_on_chr9 5 Brix content regional haplotype-based associa 163 tomato accessions accessions rs09_3477979 NA 9 3435498 0 9 3800385 0 10.1093/hr/uhab009 NA NA t4081.T001240 association_on_chr9 5 Brix content regional haplotype-based associa 163 tomato accessions accessions rs09_71452675 NA 9 71414324 0 9 71539487 0 10.1093/hr/uhab009 NA NA t4081.T001241 association_on_chr11 5 Brix content regional haplotype-based associa 163 tomato accessions accessions rs11_49507731 NA 11 49185016 0 11 50173539 0 10.1093/hr/uhab009 NA NA t4081.T001242 association_on_chr12 5 Brix content regional haplotype-based associa 163 tomato accessions accessions rs12_2329931 NA 12 1898656 0 12 2758225 0 10.1093/hr/uhab009 NA NA t4081.T001243 association_on_chr6 5 Citrate content regional haplotype-based associa 163 tomato accessions accessions rs06_44996740 NA 6 44907792 0 6 45064771 0 10.1093/hr/uhab009 NA NA t4081.T001244 association_on_chr9 5 DHA content regional haplotype-based associa 163 tomato accessions accessions rs09_69358878 NA 9 68540575 0 9 69789519 0 10.1093/hr/uhab009 NA NA t4081.T001245 association_on_chr2 5 Erythritol content regional haplotype-based associa 163 tomato accessions accessions rs02_41134765 NA 2 41108585 0 2 41223176 0 10.1093/hr/uhab009 NA NA t4081.T001246 association_on_chr6 5 Erythritol content regional haplotype-based associa 163 tomato accessions accessions rs06_42161946 NA 6 41772852 0 6 42203598 0 10.1093/hr/uhab009 NA NA t4081.T001247 association_on_chr10 5 Erythritol content regional haplotype-based associa 163 tomato accessions accessions rs10_65121066 NA 10 64921523 0 10 65303811 0 10.1093/hr/uhab009 NA NA t4081.T001248 association_on_chr2 5 Fructose content regional haplotype-based associa 163 tomato accessions accessions rs02_47218316 NA 2 47014408 0 2 47362878 0 10.1093/hr/uhab009 NA NA t4081.T001249 association_on_chr5 5 Fructose content regional haplotype-based associa 163 tomato accessions accessions rs05_60641293 NA 5 60282745 0 5 60846344 0 10.1093/hr/uhab009 NA NA t4081.T001250 association_on_chr2 5 Fucose content regional haplotype-based associa 163 tomato accessions accessions rs02_52448991 NA 2 52371581 0 2 53094402 0 10.1093/hr/uhab009 NA NA t4081.T001251 association_on_chr3 5 Fucose content regional haplotype-based associa 163 tomato accessions accessions rs03_66807096 NA 3 66764367 0 3 66885084 0 10.1093/hr/uhab009 NA NA t4081.T001252 association_on_chr10 5 Fucose content regional haplotype-based associa 163 tomato accessions accessions rs10_2542891 NA 10 2309960 0 10 2941178 0 10.1093/hr/uhab009 NA NA t4081.T001253 association_on_chr10 5 Fucose content regional haplotype-based associa 163 tomato accessions accessions rs10_61186144 NA 10 61029096 0 10 61325347 0 10.1093/hr/uhab009 NA NA t4081.T001254 association_on_chr1 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs01_85022895 NA 1 84843243 0 1 85145069 0 10.1093/hr/uhab009 NA NA t4081.T001255 association_on_chr1 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs01_92475884 NA 1 91846139 0 1 92644787 0 10.1093/hr/uhab009 NA NA t4081.T001256 association_on_chr2 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs02_49223988 NA 2 48853972 0 2 49485324 0 10.1093/hr/uhab009 NA NA t4081.T001257 association_on_chr2 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs02_54758149 NA 2 54222217 0 2 55088053 0 10.1093/hr/uhab009 NA NA t4081.T001258 association_on_chr3 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs03_1877032 NA 3 1276788 0 3 2073938 0 10.1093/hr/uhab009 NA NA t4081.T001259 association_on_chr3 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs03_23141786 NA 3 20701580 0 3 28040495 0 10.1093/hr/uhab009 NA NA t4081.T001260 association_on_chr3 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs03_33959056 NA 3 33514046 0 3 36310383 0 10.1093/hr/uhab009 NA NA t4081.T001261 association_on_chr3 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs03_67226288 NA 3 67114250 0 3 67330182 0 10.1093/hr/uhab009 NA NA t4081.T001262 association_on_chr4 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs04_55774471 NA 4 55727437 0 4 55829706 0 10.1093/hr/uhab009 NA NA t4081.T001263 association_on_chr5 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs05_7352686 NA 5 6635487 0 5 8176287 0 10.1093/hr/uhab009 NA NA t4081.T001264 association_on_chr6 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs06_38562515 NA 6 38143928 0 6 38977488 0 10.1093/hr/uhab009 NA NA t4081.T001265 association_on_chr6 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs06_41994475 NA 6 41741958 0 6 42255545 0 10.1093/hr/uhab009 NA NA t4081.T001266 association_on_chr7 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs07_2011211 NA 7 1818113 0 7 2140134 0 10.1093/hr/uhab009 NA NA t4081.T001267 association_on_chr7 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs07_57465601 NA 7 57318431 0 7 58119782 0 10.1093/hr/uhab009 NA NA t4081.T001268 association_on_chr7 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs07_62048905 NA 7 61814899 0 7 62201557 0 10.1093/hr/uhab009 NA NA t4081.T001269 association_on_chr8 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs08_62865804 NA 8 62402595 0 8 63319744 0 10.1093/hr/uhab009 NA NA t4081.T001270 association_on_chr9 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs09_2210922 NA 9 2143941 0 9 2217142 0 10.1093/hr/uhab009 NA NA t4081.T001271 association_on_chr9 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs09_29626075 NA 9 20430388 0 9 46098270 0 10.1093/hr/uhab009 NA NA t4081.T001272 association_on_chr9 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs09_61071784 NA 9 60430166 0 9 62186388 0 10.1093/hr/uhab009 NA NA t4081.T001273 association_on_chr9 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs09_68371848 NA 9 68171540 0 9 68572873 0 10.1093/hr/uhab009 NA NA t4081.T001274 association_on_chr11 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs11_3158623 NA 11 2965055 0 11 3248688 0 10.1093/hr/uhab009 NA NA t4081.T001275 association_on_chr11 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs11_55958042 NA 11 55707648 0 11 56018369 0 10.1093/hr/uhab009 NA NA t4081.T001276 association_on_chr12 4 fruit weight regional haplotype-based associa 163 tomato accessions accessions rs12_1430145 NA 12 1324253 0 12 1937156 0 10.1093/hr/uhab009 NA NA t4081.T001277 association_on_chr6 5 GABA content regional haplotype-based associa 163 tomato accessions accessions rs06_1330594 NA 6 1266788 0 6 1447768 0 10.1093/hr/uhab009 NA NA t4081.T001278 association_on_chr2 5 Glucose content regional haplotype-based associa 163 tomato accessions accessions rs02_47218316 NA 2 47014383 0 2 47322782 0 10.1093/hr/uhab009 NA NA t4081.T001279 association_on_chr3 5 Glucose content regional haplotype-based associa 163 tomato accessions accessions rs03_5239104 NA 3 4912145 0 3 6052295 0 10.1093/hr/uhab009 NA NA t4081.T001280 association_on_chr6 5 Glucose content regional haplotype-based associa 163 tomato accessions accessions rs06_41994475 NA 6 41748343 0 6 42244811 0 10.1093/hr/uhab009 NA NA t4081.T001281 association_on_chr8 5 Glutamate content regional haplotype-based associa 163 tomato accessions accessions rs08_62814480 NA 8 62061884 0 8 63145320 0 10.1093/hr/uhab009 NA NA t4081.T001282 association_on_chr12 5 Glutamate content regional haplotype-based associa 163 tomato accessions accessions rs12_904424 NA 12 715073 0 12 1357927 0 10.1093/hr/uhab009 NA NA t4081.T001283 association_on_chr6 5 Glutarate2oxo content regional haplotype-based associa 163 tomato accessions accessions rs06_44818656 NA 6 44635984 0 6 44963860 0 10.1093/hr/uhab009 NA NA t4081.T001284 association_on_chr10 5 Glutarate2oxo content regional haplotype-based associa 163 tomato accessions accessions rs10_61023555 NA 10 60596099 0 10 61029824 0 10.1093/hr/uhab009 NA NA t4081.T001285 association_on_chr11 5 Glutarate2oxo content regional haplotype-based associa 163 tomato accessions accessions rs11_54853867 NA 11 54811596 0 11 54901085 0 10.1093/hr/uhab009 NA NA t4081.T001286 association_on_chr2 5 Malate content regional haplotype-based associa 163 tomato accessions accessions rs02_22214295 NA 2 21308389 0 2 22427306 0 10.1093/hr/uhab009 NA NA t4081.T001287 association_on_chr3 5 Malate content regional haplotype-based associa 163 tomato accessions accessions rs03_65147049 NA 3 65049357 0 3 65365080 0 10.1093/hr/uhab009 NA NA t4081.T001288 association_on_chr6 5 Malate content regional haplotype-based associa 163 tomato accessions accessions rs06_44919354 NA 6 44760991 0 6 45039057 0 10.1093/hr/uhab009 NA NA t4081.T001289 association_on_chr6 5 Maltitol content regional haplotype-based associa 163 tomato accessions accessions rs06_25117534 NA 6 24945058 0 6 25732733 0 10.1093/hr/uhab009 NA NA t4081.T001290 association_on_chr9 5 Maltitol content regional haplotype-based associa 163 tomato accessions accessions rs09_17881465 NA 9 14521797 0 9 28155050 0 10.1093/hr/uhab009 NA NA t4081.T001291 association_on_chr9 5 Maltitol content regional haplotype-based associa 163 tomato accessions accessions rs09_49839317 NA 9 45638641 0 9 54538454 0 10.1093/hr/uhab009 NA NA t4081.T001292 association_on_chr1 5 Nicotinate content regional haplotype-based associa 163 tomato accessions accessions rs01_92644961 NA 1 92419952 0 1 93310548 0 10.1093/hr/uhab009 NA NA t4081.T001293 association_on_chr2 5 Nicotinate content regional haplotype-based associa 163 tomato accessions accessions rs02_54118621 NA 2 53929927 0 2 54432210 0 10.1093/hr/uhab009 NA NA t4081.T001294 association_on_chr3 5 Nicotinate content regional haplotype-based associa 163 tomato accessions accessions rs03_4884492 NA 3 4624368 0 3 4973889 0 10.1093/hr/uhab009 NA NA t4081.T001295 association_on_chr3 5 Nicotinate content regional haplotype-based associa 163 tomato accessions accessions rs03_66809350 NA 3 66764523 0 3 66899361 0 10.1093/hr/uhab009 NA NA t4081.T001296 association_on_chr5 5 Nicotinate content regional haplotype-based associa 163 tomato accessions accessions rs05_1860363 NA 5 1439222 0 5 2133518 0 10.1093/hr/uhab009 NA NA t4081.T001297 association_on_chr7 5 Nicotinate content regional haplotype-based associa 163 tomato accessions accessions rs07_61822724 NA 7 61655076 0 7 62050829 0 10.1093/hr/uhab009 NA NA t4081.T001298 association_on_chr8 5 Nicotinate content regional haplotype-based associa 163 tomato accessions accessions rs08_53602606 NA 8 53040148 0 8 54178942 0 10.1093/hr/uhab009 NA NA t4081.T001299 association_on_chr7 5 Phenylalanine content regional haplotype-based associa 163 tomato accessions accessions rs07_65807351 NA 7 65614739 0 7 65975230 0 10.1093/hr/uhab009 NA NA t4081.T001300 association_on_chr2 5 Proline content regional haplotype-based associa 163 tomato accessions accessions rs02_34220988 NA 2 33651320 0 2 34801684 0 10.1093/hr/uhab009 NA NA t4081.T001301 association_on_chr3 5 Proline content regional haplotype-based associa 163 tomato accessions accessions rs03_66720661 NA 3 66440503 0 3 66734401 0 10.1093/hr/uhab009 NA NA t4081.T001302 association_on_chr5 5 Proline content regional haplotype-based associa 163 tomato accessions accessions rs05_1664103 NA 5 1373499 0 5 1998377 0 10.1093/hr/uhab009 NA NA t4081.T001303 association_on_chr6 5 Proline content regional haplotype-based associa 163 tomato accessions accessions rs06_25117534 NA 6 24950810 0 6 25660585 0 10.1093/hr/uhab009 NA NA t4081.T001304 association_on_chr8 5 Proline content regional haplotype-based associa 163 tomato accessions accessions rs08_60598551 NA 8 60162211 0 8 60821780 0 10.1093/hr/uhab009 NA NA t4081.T001305 association_on_chr9 5 Proline content regional haplotype-based associa 163 tomato accessions accessions rs09_17881465 NA 9 15588107 0 9 28030987 0 10.1093/hr/uhab009 NA NA t4081.T001306 association_on_chr9 5 Proline content regional haplotype-based associa 163 tomato accessions accessions rs09_49223167 NA 9 39774798 0 9 53575317 0 10.1093/hr/uhab009 NA NA t4081.T001307 association_on_chr9 5 Proline content regional haplotype-based associa 163 tomato accessions accessions rs09_62209136 NA 9 61415244 0 9 62314387 0 10.1093/hr/uhab009 NA NA t4081.T001308 association_on_chr1 5 Rhamnose content regional haplotype-based associa 163 tomato accessions accessions rs01_92492935 NA 1 92203206 0 1 92645216 0 10.1093/hr/uhab009 NA NA t4081.T001309 association_on_chr2 5 Rhamnose content regional haplotype-based associa 163 tomato accessions accessions rs02_20852994 NA 2 20335127 0 2 22198488 0 10.1093/hr/uhab009 NA NA t4081.T001310 association_on_chr3 5 Rhamnose content regional haplotype-based associa 163 tomato accessions accessions rs03_65045517 NA 3 64909434 0 3 65063674 0 10.1093/hr/uhab009 NA NA t4081.T001311 association_on_chr3 5 Rhamnose content regional haplotype-based associa 163 tomato accessions accessions rs03_67080375 NA 3 67019742 0 3 67151919 0 10.1093/hr/uhab009 NA NA t4081.T001312 association_on_chr4 5 Rhamnose content regional haplotype-based associa 163 tomato accessions accessions rs04_1163761 NA 4 875038 0 4 1220614 0 10.1093/hr/uhab009 NA NA t4081.T001313 association_on_chr4 5 Rhamnose content regional haplotype-based associa 163 tomato accessions accessions rs04_44934889 NA 4 40797863 0 4 47615608 0 10.1093/hr/uhab009 NA NA t4081.T001314 association_on_chr4 5 Rhamnose content regional haplotype-based associa 163 tomato accessions accessions rs04_56044571 NA 4 55986542 0 4 57883396 0 10.1093/hr/uhab009 NA NA t4081.T001315 association_on_chr5 5 Rhamnose content regional haplotype-based associa 163 tomato accessions accessions rs05_558180 NA 5 200737 0 5 636135 0 10.1093/hr/uhab009 NA NA t4081.T001316 association_on_chr7 5 Rhamnose content regional haplotype-based associa 163 tomato accessions accessions rs07_62755438 NA 7 62299667 0 7 63029123 0 10.1093/hr/uhab009 NA NA t4081.T001317 association_on_chr11 5 Rhamnose content regional haplotype-based associa 163 tomato accessions accessions rs11_54852419 NA 11 54785657 0 11 54854095 0 10.1093/hr/uhab009 NA NA t4081.T001318 association_on_chr11 5 Saccharate content regional haplotype-based associa 163 tomato accessions accessions rs11_52804397 NA 11 52539907 0 11 52843886 0 10.1093/hr/uhab009 NA NA t4081.T001319 association_on_chr2 5 Sucrose content regional haplotype-based associa 163 tomato accessions accessions rs02_47218316 NA 2 47070434 0 2 47332914 0 10.1093/hr/uhab009 NA NA t4081.T001320 association_on_chr6 5 Sucrose content regional haplotype-based associa 163 tomato accessions accessions rs06_25117534 NA 6 24865867 0 6 25656439 0 10.1093/hr/uhab009 NA NA t4081.T001321 association_on_chr6 5 Sucrose content regional haplotype-based associa 163 tomato accessions accessions rs06_41994475 NA 6 41710556 0 6 42257843 0 10.1093/hr/uhab009 NA NA t4081.T001322 association_on_chr8 5 Sucrose content regional haplotype-based associa 163 tomato accessions accessions rs08_64447573 NA 8 64359649 0 8 64986565 0 10.1093/hr/uhab009 NA NA t4081.T001323 association_on_chr6 5 Threonine content regional haplotype-based associa 163 tomato accessions accessions rs06_1330574 NA 6 1252287 0 6 1357763 0 10.1093/hr/uhab009 NA NA t4081.T001324 association_on_chr10 5 Tocopherol content regional haplotype-based associa 163 tomato accessions accessions rs10_2199297 NA 10 1985675 0 10 2389583 0 10.1093/hr/uhab009 NA NA t4081.T001325 association_on_chr4 5 Tyramine content regional haplotype-based associa 163 tomato accessions accessions rs04_62948548 NA 4 62825112 0 4 63536688 0 10.1093/hr/uhab009 NA NA t4081.T001326 association_on_chr8 5 Tyramine content regional haplotype-based associa 163 tomato accessions accessions rs08_60405484 NA 8 60007557 0 8 60671836 0 10.1093/hr/uhab009 NA NA t4081.T001327 association_on_chr_9 5 ASA content regional SNP-based association 163 tomato accessions accessions rs09_2411368 NA 9 2213892 0 9 2558851 0 10.1093/hr/uhab009 NA NA t4081.T001328 association_on_chr_4 5 Aspartate content regional SNP-based association 163 tomato accessions accessions rs04_60724790 NA 4 60367116 0 4 61131508 0 10.1093/hr/uhab009 NA NA t4081.T001329 association_on_chr_4 5 Brix content regional SNP-based association 163 tomato accessions accessions rs04_993580 NA 4 845831 0 4 1166436 0 10.1093/hr/uhab009 NA NA t4081.T001330 association_on_chr_6 5 Brix content regional SNP-based association 163 tomato accessions accessions rs06_43589609 NA 6 43182556 0 6 44112996 0 10.1093/hr/uhab009 NA NA t4081.T001331 association_on_chr_8 5 Brix content regional SNP-based association 163 tomato accessions accessions rs08_64194956 NA 8 63846570 0 8 64242138 0 10.1093/hr/uhab009 NA NA t4081.T001332 association_on_chr_9 5 Brix content regional SNP-based association 163 tomato accessions accessions rs09_3477979 NA 9 3435498 0 9 3800385 0 10.1093/hr/uhab009 NA NA t4081.T001333 association_on_chr_12 5 Brix content regional SNP-based association 163 tomato accessions accessions rs12_2329931 NA 12 1898656 0 12 2758225 0 10.1093/hr/uhab009 NA NA t4081.T001334 association_on_chr_6 5 Citrate content regional SNP-based association 163 tomato accessions accessions rs06_44996740 NA 6 44907792 0 6 45064771 0 10.1093/hr/uhab009 NA NA t4081.T001335 association_on_chr_9 5 DHA content regional SNP-based association 163 tomato accessions accessions rs09_69358878 NA 9 68540575 0 9 69789519 0 10.1093/hr/uhab009 NA NA t4081.T001336 association_on_chr_10 5 Erythritol content regional SNP-based association 163 tomato accessions accessions rs10_65121066 NA 10 64921523 0 10 65303811 0 10.1093/hr/uhab009 NA NA t4081.T001337 association_on_chr_6 5 Fructose content regional SNP-based association 163 tomato accessions accessions rs06_41994475 NA 6 41714220 0 6 42271906 0 10.1093/hr/uhab009 NA NA t4081.T001338 association_on_chr_3 5 Fucose content regional SNP-based association 163 tomato accessions accessions rs03_66807096 NA 3 66764367 0 3 66885084 0 10.1093/hr/uhab009 NA NA t4081.T001339 association_on_chr_4 5 Fucose content regional SNP-based association 163 tomato accessions accessions rs04_54480764 NA 4 53832505 0 4 54572156 0 10.1093/hr/uhab009 NA NA t4081.T001340 association_on_chr_1 4 fruit weight regional SNP-based association 163 tomato accessions accessions rs01_85022895 NA 1 84843243 0 1 85145069 0 10.1093/hr/uhab009 NA NA t4081.T001341 association_on_chr_3 4 fruit weight regional SNP-based association 163 tomato accessions accessions rs03_33959056 NA 3 33514046 0 3 36310383 0 10.1093/hr/uhab009 NA NA t4081.T001342 association_on_chr_4 4 fruit weight regional SNP-based association 163 tomato accessions accessions rs04_55774471 NA 4 55727437 0 4 55829706 0 10.1093/hr/uhab009 NA NA t4081.T001343 association_on_chr_5 4 fruit weight regional SNP-based association 163 tomato accessions accessions rs05_7352686 NA 5 6635487 0 5 8176287 0 10.1093/hr/uhab009 NA NA t4081.T001344 association_on_chr_6 4 fruit weight regional SNP-based association 163 tomato accessions accessions rs06_38562515 NA 6 38143928 0 6 38977488 0 10.1093/hr/uhab009 NA NA t4081.T001345 association_on_chr_6 4 fruit weight regional SNP-based association 163 tomato accessions accessions rs06_41994475 NA 6 41741958 0 6 42255545 0 10.1093/hr/uhab009 NA NA t4081.T001346 association_on_chr_7 4 fruit weight regional SNP-based association 163 tomato accessions accessions rs07_62048905 NA 7 61814899 0 7 62201557 0 10.1093/hr/uhab009 NA NA t4081.T001347 association_on_chr_9 4 fruit weight regional SNP-based association 163 tomato accessions accessions rs09_2210922 NA 9 2143941 0 9 2217142 0 10.1093/hr/uhab009 NA NA t4081.T001348 association_on_chr_11 4 fruit weight regional SNP-based association 163 tomato accessions accessions rs11_3158623 NA 11 2965055 0 11 3248688 0 10.1093/hr/uhab009 NA NA t4081.T001349 association_on_chr_11 4 fruit weight regional SNP-based association 163 tomato accessions accessions rs11_55958042 NA 11 55707648 0 11 56018369 0 10.1093/hr/uhab009 NA NA t4081.T001350 association_on_chr_12 4 fruit weight regional SNP-based association 163 tomato accessions accessions rs12_1430145 NA 12 1324253 0 12 1937156 0 10.1093/hr/uhab009 NA NA t4081.T001351 association_on_chr_6 5 GABA content regional SNP-based association 163 tomato accessions accessions rs06_1330594 NA 6 1266788 0 6 1447768 0 10.1093/hr/uhab009 NA NA t4081.T001352 association_on_chr_6 5 Glucose content regional SNP-based association 163 tomato accessions accessions rs06_41994475 NA 6 41748343 0 6 42244811 0 10.1093/hr/uhab009 NA NA t4081.T001353 association_on_chr_4 5 Glutamate content regional SNP-based association 163 tomato accessions accessions rs04_60724790 NA 4 60383511 0 4 61132407 0 10.1093/hr/uhab009 NA NA t4081.T001354 association_on_chr_12 5 Glutamate content regional SNP-based association 163 tomato accessions accessions rs12_904424 NA 12 715073 0 12 1357927 0 10.1093/hr/uhab009 NA NA t4081.T001355 association_on_chr_10 5 Glutarate2oxo content regional SNP-based association 163 tomato accessions accessions rs10_61023555 NA 10 60596099 0 10 61029824 0 10.1093/hr/uhab009 NA NA t4081.T001356 association_on_chr_2 5 Inositol1P content regional SNP-based association 163 tomato accessions accessions rs02_35173023 NA 2 34431239 0 2 35294389 0 10.1093/hr/uhab009 NA NA t4081.T001357 association_on_chr_2 5 Malate content regional SNP-based association 163 tomato accessions accessions rs02_22214295 NA 2 21308389 0 2 22427306 0 10.1093/hr/uhab009 NA NA t4081.T001358 association_on_chr_3 5 Malate content regional SNP-based association 163 tomato accessions accessions rs03_65147049 NA 3 65049357 0 3 65365080 0 10.1093/hr/uhab009 NA NA t4081.T001359 association_on_chr_9 5 Maltitol content regional SNP-based association 163 tomato accessions accessions rs09_17881465 NA 9 14521797 0 9 28155050 0 10.1093/hr/uhab009 NA NA t4081.T001360 association_on_chr_9 5 Maltitol content regional SNP-based association 163 tomato accessions accessions rs09_49839317 NA 9 45638641 0 9 54538454 0 10.1093/hr/uhab009 NA NA t4081.T001361 association_on_chr_3 5 Nicotinate content regional SNP-based association 163 tomato accessions accessions rs03_66809350 NA 3 66764523 0 3 66899361 0 10.1093/hr/uhab009 NA NA t4081.T001362 association_on_chr_5 5 Nicotinate content regional SNP-based association 163 tomato accessions accessions rs05_1860363 NA 5 1439222 0 5 2133518 0 10.1093/hr/uhab009 NA NA t4081.T001363 association_on_chr_12 5 Nicotinate content regional SNP-based association 163 tomato accessions accessions rs12_1420748 NA 12 1253256 0 12 1762413 0 10.1093/hr/uhab009 NA NA t4081.T001364 association_on_chr_2 5 Proline content regional SNP-based association 163 tomato accessions accessions rs02_51094633 NA 2 50554695 0 2 51388460 0 10.1093/hr/uhab009 NA NA t4081.T001365 association_on_chr_3 5 Proline content regional SNP-based association 163 tomato accessions accessions rs03_66720661 NA 3 66440503 0 3 66734401 0 10.1093/hr/uhab009 NA NA t4081.T001366 association_on_chr_6 5 Proline content regional SNP-based association 163 tomato accessions accessions rs06_25117534 NA 6 24950810 0 6 25660585 0 10.1093/hr/uhab009 NA NA t4081.T001367 association_on_chr_8 5 Proline content regional SNP-based association 163 tomato accessions accessions rs08_928474 NA 8 871320 0 8 1177414 0 10.1093/hr/uhab009 NA NA t4081.T001368 association_on_chr_9 5 Proline content regional SNP-based association 163 tomato accessions accessions rs09_17881465 NA 9 15588107 0 9 28030987 0 10.1093/hr/uhab009 NA NA t4081.T001369 association_on_chr_9 5 Proline content regional SNP-based association 163 tomato accessions accessions rs09_62209136 NA 9 61415244 0 9 62314387 0 10.1093/hr/uhab009 NA NA t4081.T001370 association_on_chr_3 5 Rhamnose content regional SNP-based association 163 tomato accessions accessions rs03_67080375 NA 3 67019742 0 3 67151919 0 10.1093/hr/uhab009 NA NA t4081.T001371 association_on_chr_10 5 Saccharate content regional SNP-based association 163 tomato accessions accessions rs10_474132 NA 10 185887 0 10 744572 0 10.1093/hr/uhab009 NA NA t4081.T001372 association_on_chr_6 5 Sucrose content regional SNP-based association 163 tomato accessions accessions rs06_25117534 NA 6 24865867 0 6 25656439 0 10.1093/hr/uhab009 NA NA t4081.T001373 association_on_chr_10 5 Tocopherol content regional SNP-based association 163 tomato accessions accessions rs10_2199297 NA 10 1985675 0 10 2389583 0 10.1093/hr/uhab009 NA NA t4081.T001374 association_on_chr_8 5 Tyramine content regional SNP-based association 163 tomato accessions accessions rs08_60405484 NA 8 60007557 0 8 60671836 0 10.1093/hr/uhab009 NA NA t4081.T001375 association_on_chr_9 5 Tyramine content regional SNP-based association 163 tomato accessions accessions rs09_68174329 NA 9 67851515 0 9 68401059 0 10.1093/hr/uhab009 NA NA t4081.T001376 association_on_chr_2 4 fruit weight multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs02_54873732 NA 2 54599224 0 2 54874151 0 2.034961e-13 10.1093/hr/uhab009 NA NA t4081.T001377 association_on_chr_4 4 fruit weight multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs04_59964407 NA 4 55460761 0 4 60524629 0 1.953684e-11 10.1093/hr/uhab009 NA NA t4081.T001378 association_on_chr_4 4 fruit weight multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs04_65358078 NA 4 63582333 0 4 66489674 0 4.513665e-06 10.1093/hr/uhab009 NA NA t4081.T001379 association_on_chr_6 4 fruit weight multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs06_44849440 NA 6 42359139 0 6 46959297 0 6.920636e-06 10.1093/hr/uhab009 NA NA t4081.T001380 association_on_chr_7 4 fruit weight multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs07_3279240 NA 7 2247152 0 7 3330664 0 2.597689e-17 10.1093/hr/uhab009 NA NA t4081.T001381 association_on_chr_7 4 fruit weight multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs07_3745280 NA 7 3429976 0 7 3815708 0 8.678322e-09 10.1093/hr/uhab009 NA NA t4081.T001382 association_on_chr_7 4 fruit weight multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs07_66672032 NA 7 66657641 0 7 66668624 0 5.558497e-12 10.1093/hr/uhab009 NA NA t4081.T001383 association_on_chr_8 4 fruit weight multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs08_60195041 NA 8 59963068 0 8 60636375 0 2.451749e-09 10.1093/hr/uhab009 NA NA t4081.T001384 association_on_chr_12 4 fruit weight multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs12_1430145 NA 12 1395964 0 12 1449699 0 1.781454e-16 10.1093/hr/uhab009 NA NA t4081.T001385 association_on_chr_6 5 ASA content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs06_40541416 NA 6 38691771 0 6 41800372 0 1.42e-05 10.1093/hr/uhab009 NA NA t4081.T001386 association_on_chr_7 5 ASA content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs07_66663289 NA 7 66657641 0 7 66668624 0 2.94e-10 10.1093/hr/uhab009 NA NA t4081.T001387 association_on_chr_9 5 ASA content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs09_2411368 NA 9 1218234 0 9 3251393 0 1.09e-07 10.1093/hr/uhab009 NA NA t4081.T001388 association_on_chr_9 5 ASA content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs09_66376508 NA 9 64391250 0 9 67475096 0 1.07e-05 10.1093/hr/uhab009 NA NA t4081.T001389 association_on_chr_11 5 ASA content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs11_3393788 NA 11 3174682 0 11 3434250 0 4.66e-08 10.1093/hr/uhab009 NA NA t4081.T001390 association_on_chr_2 5 Asn content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs02_54365596 NA 2 54310988 0 2 54625509 0 1.93e-07 10.1093/hr/uhab009 NA NA t4081.T001391 association_on_chr_4 5 Asp content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs04_60724790 NA 4 60425430 0 4 62287804 0 1.67e-07 10.1093/hr/uhab009 NA NA t4081.T001392 association_on_chr_6 5 Citrate content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs06_44955568 NA 6 44641317 0 6 44955621 0 1.48e-07 10.1093/hr/uhab009 NA NA t4081.T001393 association_on_chr_9 5 DHA content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs09_69358878 NA 9 65744780 0 9 70214577 0 3.16e-39 10.1093/hr/uhab009 NA NA t4081.T001394 association_on_chr_11 5 DHA content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs11_3063738 NA 11 2933146 0 11 3210568 0 8.49e-07 10.1093/hr/uhab009 NA NA t4081.T001395 association_on_chr_2 5 Erythritol content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs02_41981476 NA 2 41158136 0 2 42148698 0 1.24e-07 10.1093/hr/uhab009 NA NA t4081.T001396 association_on_chr_10 5 Erythritol content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs10_65121066 NA 10 63752582 0 10 65232094 0 5.98e-16 10.1093/hr/uhab009 NA NA t4081.T001397 association_on_chr_5 5 Fru content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs05_60640821 NA 5 60387327 0 5 60641168 0 9.31e-07 10.1093/hr/uhab009 NA NA t4081.T001398 association_on_chr_6 5 Fru content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs06_41994475 NA 6 41404898 0 6 42102847 0 9.05e-07 10.1093/hr/uhab009 NA NA t4081.T001399 association_on_chr_3 5 Fuc content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs03_66807096 NA 3 66806258 0 3 66836647 0 2.7e-07 10.1093/hr/uhab009 NA NA t4081.T001400 association_on_chr_4 5 Fuc content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs04_54480764 NA 4 54185403 0 4 54545844 0 1.63e-06 10.1093/hr/uhab009 NA NA t4081.T001401 association_on_chr_6 5 GABA content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs06_1330594 NA 6 1329361 0 6 1475391 0 5.53e-08 10.1093/hr/uhab009 NA NA t4081.T001402 association_on_chr_2 5 Malate content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs02_22214295 NA 2 10570194 0 2 28803661 0 1.28e-06 10.1093/hr/uhab009 NA NA t4081.T001403 association_on_chr_6 5 Malate content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs06_44955568 NA 6 44641317 0 6 44955621 0 2.48e-08 10.1093/hr/uhab009 NA NA t4081.T001404 association_on_chr_2 5 Nicotinate content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs02_54873732 NA 2 54599224 0 2 54874151 0 3.83e-06 10.1093/hr/uhab009 NA NA t4081.T001405 association_on_chr_2 5 Pro content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs02_34220988 NA 2 5408025 0 2 38642232 0 3.71e-06 10.1093/hr/uhab009 NA NA t4081.T001406 association_on_chr_6 5 Pro content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs06_25117534 NA 6 24171480 0 6 25429720 0 3.91e-07 10.1093/hr/uhab009 NA NA t4081.T001407 association_on_chr_1 5 Rha content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs01_92492935 NA 1 91808475 0 1 95927839 0 2.61e-08 10.1093/hr/uhab009 NA NA t4081.T001408 association_on_chr_3 5 Rha content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs03_65049140 NA 3 65048545 0 3 65049261 0 2.32e-09 10.1093/hr/uhab009 NA NA t4081.T001409 association_on_chr_8 5 Rha content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs08_1403227 NA 8 1401680 0 8 3652087 0 9.41e-06 10.1093/hr/uhab009 NA NA t4081.T001410 association_on_chr_9 5 Rha content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs09_3484890 NA 9 3479971 0 9 3507971 0 2.1e-10 10.1093/hr/uhab009 NA NA t4081.T001411 association_on_chr_2 5 SSC content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs02_35274016 NA 2 26923732 0 2 35497195 0 7.79e-26 10.1093/hr/uhab009 NA NA t4081.T001412 association_on_chr_2 5 SSC content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs02_48629882 NA 2 47785343 0 2 50325174 0 7.73e-10 10.1093/hr/uhab009 NA NA t4081.T001413 association_on_chr_3 5 SSC content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs03_71076 NA 3 0 0 3 1971818 0 0.0006 10.1093/hr/uhab009 NA NA t4081.T001414 association_on_chr_6 5 SSC content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs06_1748321 NA 6 1254 0 6 14993414 0 2.92e-21 10.1093/hr/uhab009 NA NA t4081.T001415 association_on_chr_7 5 SSC content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs07_62755438 NA 7 57514198 0 7 63709083 0 1.22e-12 10.1093/hr/uhab009 NA NA t4081.T001416 association_on_chr_8 5 SSC content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs08_62311446 NA 8 59940364 0 8 66571680 0 5.57e-08 10.1093/hr/uhab009 NA NA t4081.T001417 association_on_chr_9 5 SSC content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs09_3477979 NA 9 3477563 0 9 3510003 0 1.34e-33 10.1093/hr/uhab009 NA NA t4081.T001418 association_on_chr_11 5 SSC content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs11_2481288 NA 11 2444016 0 11 2520530 0 1.89e-13 10.1093/hr/uhab009 NA NA t4081.T001419 association_on_chr_12 5 SSC content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs12_5274083 NA 12 4907413 0 12 9855738 0 2.41e-06 10.1093/hr/uhab009 NA NA t4081.T001420 association_on_chr_2 5 Suc content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs02_41913145 NA 2 40657169 0 2 43979649 0 2.57e-06 10.1093/hr/uhab009 NA NA t4081.T001421 association_on_chr_4 5 Suc content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs04_61799612 NA 4 61685935 0 4 61846586 0 6.01e-05 10.1093/hr/uhab009 NA NA t4081.T001422 association_on_chr_5 5 Suc content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs05_4037126 NA 5 3934446 0 5 4082059 0 9.51e-09 10.1093/hr/uhab009 NA NA t4081.T001423 association_on_chr_2 5 Thr content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs02_54365596 NA 2 54310988 0 2 54625509 0 3.75e-07 10.1093/hr/uhab009 NA NA t4081.T001424 association_on_chr_4 5 Threonate content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs04_60724790 NA 4 60425430 0 4 62287804 0 5.73e-06 10.1093/hr/uhab009 NA NA t4081.T001425 association_on_chr_10 5 Tocopherol content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs10_2199297 NA 10 1626097 0 10 2440580 0 4.35e-07 10.1093/hr/uhab009 NA NA t4081.T001426 association_on_chr_8 5 Tyramine content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs08_2587919 NA 8 2576623 0 8 2658946 0 1.12e-05 10.1093/hr/uhab009 NA NA t4081.T001427 association_on_chr_8 5 Tyramine content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs08_60405484 NA 8 59536365 0 8 60762142 0 1.18e-07 10.1093/hr/uhab009 NA NA t4081.T001428 association_on_chr_11 5 Tyramine content multi-locus mixed-model (MLMM) 163 tomato accessions accessions rs11_762353 NA 11 758724 0 11 1306196 0 1.54e-06 10.1093/hr/uhab009 NA NA t4081.T001429 QTL_Yr1_P 5 Fruit Size (perimeter) composite interval mapping (CIM) NC10204 F2:3 solcap_snp_sl_21867 NA 2 47948927 0 0 0 77.44 6.9 10.3390/genes11101117 NA NA t4081.T001430 QTL_Yr2_P 5 Fruit Size (perimeter) composite interval mapping (CIM) NC10204 F5:6 solcap_snp_sl_50066 NA 2 44783686 0 0 0 67.7 4.7 10.3390/genes11101117 NA NA t4081.T001431 QTL_Yr1_A 5 Fruit Size (area) composite interval mapping (CIM) NC10204 F2:3 solcap_snp_sl_21867 NA 2 47948927 0 0 0 75.44 7.8 10.3390/genes11101117 NA NA t4081.T001432 QTL_Yr2_A 5 Fruit Size (area) composite interval mapping (CIM) NC10204 F5:6 solcap_snp_sl_42324 NA 2 44069445 0 0 0 66.73 5.4 10.3390/genes11101117 NA NA t4081.T001433 QTL_Yr1_WMH 4 Fruit Size (width mid-height) composite interval mapping (CIM) NC10204 F2:3 solcap_snp_sl_21867 NA 2 47948927 0 0 0 77.44 7.7 10.3390/genes11101117 NA NA t4081.T001434 QTL_Yr2_WMH 4 Fruit Size (width mid-height) composite interval mapping (CIM) NC10204 F5:6 solcap_snp_sl_21867 NA 2 47948927 0 0 0 77.44 3.7 10.3390/genes11101117 NA NA t4081.T001435 QTL_Yr1_MW 4 Fruit Size (maximum width) composite interval mapping (CIM) NC10204 F2:3 solcap_snp_sl_21867 NA 2 47948927 0 0 0 72.44 6.9 10.3390/genes11101117 NA NA t4081.T001436 QTL_Yr2_MW 4 Fruit Size (maximum width) composite interval mapping (CIM) NC10204 F5:6 solcap_snp_sl_21867 NA 2 47948927 0 0 0 76.44 3.6 10.3390/genes11101117 NA NA t4081.T001437 QTL_Yr1_FST 5 Fruit Shape (fruit shape triangle) composite interval mapping (CIM) NC10204 F2:3 solcap_snp_sl_9598 NA 10 4260136 0 solcap_snp_sl_16517 10 57327585 0 22.77 4 10.3390/genes11101117 NA NA t4081.T001438 QTL_Yr2_FST 5 Fruit Shape (fruit shape triangle) composite interval mapping (CIM) NC10204 F5:6 solcap_snp_sl_34373 NA 10 3991802 0 solcap_snp_sl_9598 10 4260136 0 16.07 5.4 10.3390/genes11101117 NA NA t4081.T001439 QTL_Yr1_Ob 5 Fruit Shape (obovoid) composite interval mapping (CIM) NC10204 F2:3 solcap_snp_sl_1573 NA 12 4038812 0 solcap_snp_sl_58869 12 5029856 0 1.26 4.9 10.3390/genes11101117 NA NA t4081.T001440 QTL_Yr2_Ob 5 Fruit Shape (obovoid) composite interval mapping (CIM) NC10204 F5:6 solcap_snp_sl_24755 NA 12 7801435 0 solcap_snp_sl_31628 12 64210355 0 43.48 4.2 10.3390/genes11101117 NA NA t4081.T001441 qtph1.1 4 plant height QTL seq and single marker analys F2 population F2 HP3809 NA 1 88337244 0 W1J13; W1P9 0 0 7.89e-11 10.3389/fgene.2020.00881 NA NA t4081.T001442 qtph3.1 4 plant height QTL seq and single marker analys F2 population F2 HP3473 NA 3 65101614 0 0 0 4.54e-11 10.3389/fgene.2020.00881 NA NA t4081.T001443 qtph5.1 4 plant height QTL seq and single marker analys F2 population F2 HP3547 NA 5 63575150 0 0 0 0.00668 10.3389/fgene.2020.00881 NA NA t4081.T001444 qtph9.1 4 plant height QTL seq and single marker analys F2 population F2 HP5551 NA 9 68007721 0 0 0 0.00326 10.3389/fgene.2020.00881 NA NA t4081.T001445 qtph10.1 4 plant height QTL seq and single marker analys F2 population F2 HP2979 NA 10 62189685 0 0 0 0.00918 10.3389/fgene.2020.00881 NA NA t4081.T001446 qtph11.1 4 plant height QTL seq and single marker analys F2 population F2 HP805 NA 11 55008071 0 0 0 2.1e-05 10.3389/fgene.2020.00881 NA NA t4081.T001447 qtph12.1 4 plant height QTL seq and single marker analys F2 population F2 HP2007 NA 12 5423842 0 0 0 3.94e-08 10.3389/fgene.2020.00881 NA NA t4081.T001448 Solyc06g035530.2 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 24482686 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001449 Solyc06g035620.2 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 24667815 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001450 Solyc06g035630.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 24669159 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001451 Solyc06g036060.2 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 25438944 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001452 Solyc06g048580.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 31287788 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001453 Solyc06g051110.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 34213688 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001454 Solyc06g051110.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 34214085 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001455 Solyc06g051140.2 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 34285452 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001456 Solyc06g051140.2 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 34285469 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001457 Solyc06g051140.2 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 34285734 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001458 Solyc06g051150.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 34291655 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001459 Solyc06g051190.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 34389374 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001460 Solyc06g051210.2 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 34399541 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001461 Solyc06g053210.2 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 35950028 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001462 Solyc06g054000.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 36868039 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001463 Solyc06g054200.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 37021520 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001464 Solyc06g054230.2 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 37049726 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001465 Solyc06g054400.2 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM6-118 NA 6 37186202 0 SLM6-17 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001466 Solyc12g009640.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 2917467 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001467 Solyc12g009650.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 2923210 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001468 Solyc12g009660.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 2930668 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001469 Solyc12g009660.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 2931340 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001470 Solyc12g009660.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 2931412 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001471 Solyc12g009670.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 2932278 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001472 Solyc12g009690.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties KHU-1 NA 12 2941301 0 SLM12-12; SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001473 Solyc12g009690.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties KHU-2 NA 12 2941415 0 SLM12-12; SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001474 Solyc12g009690.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties KHU-3 NA 12 2941468 0 SLM12-12; SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001475 Solyc12g009690.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties KHU-3 NA 12 2941490 0 SLM12-12; SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001476 Solyc12g009690.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties KHU-4 NA 12 2941583 0 SLM12-12; SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001477 Solyc12g009690.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties KHU-5 NA 12 2941708 0 SLM12-12; SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001478 Solyc12g009690.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties KHU-6 NA 12 2941798 0 SLM12-12; SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001479 Solyc12g009700.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 2946217 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001480 Solyc12g009740.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties KHU-7 NA 12 2967484 0 SLM12-12; SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001481 Solyc12g009740.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties KHU-8 NA 12 2967870 0 SLM12-12; SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001482 Solyc12g009770.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties KHU-9 NA 12 2987224 0 SLM12-12; SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001483 Solyc12g009770.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties KHU-10 NA 12 2987572 0 SLM12-12; SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001484 Solyc12g009770.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties KHU-11 NA 12 2987704 0 SLM12-12; SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001485 Solyc12g009770.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties KHU-11 NA 12 2987743 0 SLM12-12; SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001486 Solyc12g009770.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties KHU-11 NA 12 2987765 0 SLM12-12; SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001487 Solyc12g009770.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties KHU-12 NA 12 2987977 0 SLM12-12; SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001488 Solyc12g009780.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties KHU-13 NA 12 2993505 0 SLM12-12; SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001489 Solyc12g010000.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3138798 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001490 Solyc12g010040.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3184832 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001491 Solyc12g010080.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3227089 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001492 Solyc12g010080.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3227848 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001493 Solyc12g010080.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3228296 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001494 Solyc12g010100.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3231454 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001495 Solyc12g010100.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3231542 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001496 Solyc12g010100.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3231640 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001497 Solyc12g010100.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3231719 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001498 Solyc12g010100.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3231839 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001499 Solyc12g010110.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3237169 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001500 Solyc12g010110.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3237248 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001501 Solyc12g010110.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3237309 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001502 Solyc12g010110.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3237373 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001503 Solyc12g010110.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3238637 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001504 Solyc12g010110.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3238801 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001505 Solyc12g010110.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3239405 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001506 Solyc12g010110.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3239423 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001507 Solyc12g010110.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3239621 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001508 Solyc12g010110.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3239886 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001509 Solyc12g010110.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3239985 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001510 Solyc12g010120.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3252079 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001511 Solyc12g010130.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3267637 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001512 Solyc12g010130.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3268288 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001513 Solyc12g010140.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3273350 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001514 Solyc12g010140.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3273355 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001515 Solyc12g010140.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3273392 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001516 Solyc12g010170.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3286081 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001517 Solyc12g010220.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3340231 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001518 Solyc12g010230.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3345912 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001519 Solyc12g010280.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3366188 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001520 Solyc12g010380.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3438868 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001521 Solyc12g010500.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3510324 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001522 Solyc12g010540.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3531946 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001523 Solyc12g010940.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 3822493 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001524 Solyc12g088990.1 1 disease resistance to bacterial wilt GWAS 8 tomato varieties varieties SLM12-12 NA 12 64154566 0 SLM12-2 0 0 < 0.05 10.1007/s00122-018-3054-1 NA NA t4081.T001525 Firm1.1 5 Firmness interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y01_01730558 NA 1 1253219 0 Y01_2446381 1 3117977 0 8 - 26.54 0.000917 10.3389/fpls.2018.00279 NA NA t4081.T001526 Firm1.2 5 Firmness interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y01_91212721 NA 1 91212721 0 Y01_91314498 1 92266398 0 160.07 - 170 2.1e-05 10.3389/fpls.2018.00279 NA NA t4081.T001527 Firm2.1 5 Firmness interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y02_19236455 NA 2 5855256 0 Y02_19860103 2 33973517 0 0 - 6.44 0.000931 10.3389/fpls.2018.00279 NA NA t4081.T001528 Firm3.1 5 Firmness interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y03_63211070 NA 3 61927295 0 Y03_63370267 3 63370267 0 144.22 - 164.44 0.000637 10.3389/fpls.2018.00279 NA NA t4081.T001529 Firm8.1 5 Firmness interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y08_57208257 NA 8 57208257 0 Y08_57585344 8 58436979 0 38 - 56 0.000864 10.3389/fpls.2018.00279 NA NA t4081.T001530 Firm8.1 5 Firmness interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y08_61097319 NA 8 58364459 0 Y08_61170209 8 64250419 0 52 - 111.13 0.000532 10.3389/fpls.2018.00279 NA NA t4081.T001531 Firm9.1 5 Firmness interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y09_8333659 NA 9 4550994 0 Y09_11384066 9 66553493 0 80 - 126 0.000345 10.3389/fpls.2018.00279 NA NA t4081.T001532 Firm11.1 5 Firmness interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_1378678 NA 11 114313 0 Y11_01987728 11 1987728 0 0 - 30 9.77e-07 10.3389/fpls.2018.00279 NA NA t4081.T001533 Firm11.2 5 Firmness interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_7241787 NA 11 4478344 0 Y11_7826292 11 41466599 0 84.33 - 101.73 0.000127 10.3389/fpls.2018.00279 NA NA t4081.T001534 Flw1.1 4 Flowering time interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y01_29162422 NA 1 4614252 0 Y01_31257802 1 76839188 0 38.73 - 48 1.2e-11 10.3389/fpls.2018.00279 NA NA t4081.T001535 Flw1.1 4 Flowering time interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y01_29162422 NA 1 4614252 0 Y01_31257802 1 76186755 0 38.73 - 46 4.59e-14 10.3389/fpls.2018.00279 NA NA t4081.T001536 Flw1.1 4 Flowering time interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y01_75855371 NA 1 4961570 0 Y01_76186755 1 76839188 0 40 - 48 3.11e-15 10.3389/fpls.2018.00279 NA NA t4081.T001537 Flw1.1 4 Flowering time interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y01_77436487 NA 1 4614252 0 Y01_77656130 1 82578583 0 38.73 - 80 8.82e-07 10.3389/fpls.2018.00279 NA NA t4081.T001538 Flw2.1 4 Flowering time interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y02_2784466 NA 2 5855256 0 Y02_33973517 2 34867853 0 0 - 7.92 0.00027 10.3389/fpls.2018.00279 NA NA t4081.T001539 Flw3.1 4 Flowering time interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y03_63211070 NA 3 62328005 0 Y03_63370267 3 65387833 0 148 - 186 0.000964 10.3389/fpls.2018.00279 NA NA t4081.T001540 Flw3.1 4 Flowering time interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y03_64701243 NA 3 62939432 0 Y03_64793561 3 65387833 0 158 - 186 0.000142 10.3389/fpls.2018.00279 NA NA t4081.T001541 Flw9.1 4 Flowering time interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y09_68638813 NA 9 68297506 0 Y09_68807596 9 69705433 0 145 - 178 2.09e-06 10.3389/fpls.2018.00279 NA NA t4081.T001542 Flw9.1 4 Flowering time interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y09_69261614 NA 9 68414060 0 Y09_69332969 9 69958773 0 145.41 - 188 4.39e-05 10.3389/fpls.2018.00279 NA NA t4081.T001543 Flw9.1 4 Flowering time interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y09_69468865 NA 9 68638813 0 Y09_69553678 9 69643464 0 146 - 172 0.000991 10.3389/fpls.2018.00279 NA NA t4081.T001544 FW1.1 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y01_77436487 NA 1 4340507 0 Y01_77656130 1 82578583 0 36 - 72 4.04e-05 10.3389/fpls.2018.00279 NA NA t4081.T001545 FW1.1 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y01_77436487 NA 1 4614252 0 Y01_77656130 1 82578583 0 38.73 - 76 1.15e-05 10.3389/fpls.2018.00279 NA NA t4081.T001546 FW1.1 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y01_77436487 NA 1 4340507 0 Y01_77656130 1 82578583 0 36 - 74 1.4e-05 10.3389/fpls.2018.00279 NA NA t4081.T001547 FW2.1 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y02_47822111 NA 2 45447408 0 Y02_48195716 2 48899470 0 136 - 154 1.16e-05 10.3389/fpls.2018.00279 NA NA t4081.T001548 FW2.1 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y02_47822111 NA 2 44547467 0 Y02_48195716 2 49678118 0 132 - 159.14 3.3e-06 10.3389/fpls.2018.00279 NA NA t4081.T001549 FW2.2 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y02_51182657 NA 2 50236462 0 Y02_51775968 2 52920159 0 164 - 188 2.82e-05 10.3389/fpls.2018.00279 NA NA t4081.T001550 FW2.2 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y02_52855746 NA 2 51182657 0 Y02_52920159 2 52920159 0 172 - 192 4.36e-08 10.3389/fpls.2018.00279 NA NA t4081.T001551 FW2.2 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y02_52855746 NA 2 51182657 0 Y02_52920159 2 53919170 0 172 - 194 7.95e-08 10.3389/fpls.2018.00279 NA NA t4081.T001552 FW2.2 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y02_53919170 NA 2 51182657 0 Y02_54014597 2 55095059 0 176 - 200.16 2.54e-05 10.3389/fpls.2018.00279 NA NA t4081.T001553 FW3.2 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y03_64450921 NA 3 63932680 0 Y03_64521327 3 66097622 0 168 - 189.68 0.000152 10.3389/fpls.2018.00279 NA NA t4081.T001554 FW3.2 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y03_64450921 NA 3 63932680 0 Y03_64521327 3 64899693 0 168 - 180 4.65e-05 10.3389/fpls.2018.00279 NA NA t4081.T001555 FW3.3 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y03_66167743 NA 3 65244029 0 Y03_66194454 3 66768294 0 182.73 - 194 3.8e-05 10.3389/fpls.2018.00279 NA NA t4081.T001556 FW3.4 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y03_70526945 NA 3 66996042 0 Y03_70741861 3 70741861 0 198.13 - 215.2 0.000278 10.3389/fpls.2018.00279 NA NA t4081.T001557 FW8.1 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y08_59925589 NA 8 59543193 0 Y08_60170203 8 61170209 0 68 - 82 2.2e-05 10.3389/fpls.2018.00279 NA NA t4081.T001558 FW8.1 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y08_62618151 NA 8 59543193 0 Y08_62799864 8 63236918 0 68 - 104 0.000958 10.3389/fpls.2018.00279 NA NA t4081.T001559 FW11.1 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_04342018 NA 11 4151798 0 Y11_4478344 11 21798594 0 66 - 100 0.000103 10.3389/fpls.2018.00279 NA NA t4081.T001560 FW11.1 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_5023403 NA 11 4151798 0 Y11_5476941 11 21798594 0 64 - 100 1.54e-05 10.3389/fpls.2018.00279 NA NA t4081.T001561 FW11.1 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_5023403 NA 11 4710664 0 Y11_5476941 11 50676545 0 88.13 - 112 0.000102 10.3389/fpls.2018.00279 NA NA t4081.T001562 FW11.1 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_7241787 NA 11 4710664 0 Y11_7826292 11 50495947 0 88.13 - 104.97 0.000722 10.3389/fpls.2018.00279 NA NA t4081.T001563 FW11.2 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_53206534 NA 11 52511015 0 Y11_53423887 11 53823685 0 125.19 - 141.67 1.64e-05 10.3389/fpls.2018.00279 NA NA t4081.T001564 FW11.2 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_53423887 NA 11 53035288 0 Y11_53532037 11 53823685 0 130.7 - 141.67 0.000312 10.3389/fpls.2018.00279 NA NA t4081.T001565 FW11.2 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_53423887 NA 11 53035288 0 Y11_53532037 11 53823685 0 130.7 - 141.67 6.95e-05 10.3389/fpls.2018.00279 NA NA t4081.T001566 FW11.3 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_54599648 NA 11 53823685 0 Y11_54684047 11 56105593 0 142 - 183.33 0.000582 10.3389/fpls.2018.00279 NA NA t4081.T001567 FW11.3 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_54599648 NA 11 54268855 0 Y11_54684047 11 55755602 0 152.35 - 164 1.34e-06 10.3389/fpls.2018.00279 NA NA t4081.T001568 FW11.3 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_55100360 NA 11 54333565 0 Y11_55214790 11 55755602 0 153.09 - 164 2.36e-06 10.3389/fpls.2018.00279 NA NA t4081.T001569 FW12.1 4 Fruit weight interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y12_252368 NA 12 10859 0 Y12_289700 12 440913 0 0 - 4 0.000732 10.3389/fpls.2018.00279 NA NA t4081.T001570 Leaf3.1 4 Leaf length interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y03_64701243 NA 3 63932680 0 Y03_64793561 3 65387833 0 168 - 184 0.000292 10.3389/fpls.2018.00279 NA NA t4081.T001571 leaf7.1 4 Leaf length interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y07_63972793 NA 7 60027160 0 Y07_64025084 7 64920640 0 140 - 160 0.000576 10.3389/fpls.2018.00279 NA NA t4081.T001572 Leaf9.1 4 Leaf length interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y09_02673326 NA 9 2286674 0 Y09_2926053 9 3050849 0 27.27 - 50 0.000109 10.3389/fpls.2018.00279 NA NA t4081.T001573 Leaf9.2 4 Leaf length interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y09_66029792 NA 9 4550994 0 Y09_66172567 9 66553493 0 80 - 132 0.000478 10.3389/fpls.2018.00279 NA NA t4081.T001574 Leaf10.1 4 Leaf length interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y10_63191372 NA 10 62556165 0 Y10_63277141 10 64417184 0 94 - 118 0.000197 10.3389/fpls.2018.00279 NA NA t4081.T001575 Leaf11.1 4 Leaf length interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_53532037 NA 11 52915345 0 Y11_53823685 11 54464915 0 126 - 153.09 0.000732 10.3389/fpls.2018.00279 NA NA t4081.T001576 NFr1.1 3 Fruit number interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y01_77656130 NA 1 3117977 0 Y01_82578583 1 83434428 0 28 - 88 0.000857 10.3389/fpls.2018.00279 NA NA t4081.T001577 NFr2.1 3 Fruit number interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y02_42916250 NA 2 41344166 0 Y02_43090566 2 48329646 0 94 - 152 0.000419 10.3389/fpls.2018.00279 NA NA t4081.T001578 NFr2.1 3 Fruit number interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y02_47822111 NA 2 44547467 0 Y02_48195716 2 48899470 0 134 - 154 0.000153 10.3389/fpls.2018.00279 NA NA t4081.T001579 NFr2.2 3 Fruit number interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y02_52855746 NA 2 51775968 0 Y02_52920159 2 54427570 0 178.77 - 196.43 1.19e-05 10.3389/fpls.2018.00279 NA NA t4081.T001580 NFr10.1 3 Fruit number interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y10_164588 NA 10 22100 0 Y10_354213 10 1549107 0 0 - 10.89 0.000773 10.3389/fpls.2018.00279 NA NA t4081.T001581 NFr11.1 3 Fruit number interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_51851128 NA 11 50676545 0 Y11_51976036 11 53823685 0 112.27 - 140 0.000634 10.3389/fpls.2018.00279 NA NA t4081.T001582 NFr12.1 3 Fruit number interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y12_65148027 NA 12 64125346 0 Y12_65419995 12 67142748 0 154.63 - 186.18 0.000372 10.3389/fpls.2018.00279 NA NA t4081.T001583 RIP1.1 4 Time to ripe interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y01_75855371 NA 1 4614252 0 Y01_76186755 1 77656130 0 38.73 - 64 1.76e-05 10.3389/fpls.2018.00279 NA NA t4081.T001584 RIP1.1 4 Time to ripe interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y01_76569293 NA 1 4614252 0 Y01_76839188 1 77656130 0 38.73 - 64 5.01e-05 10.3389/fpls.2018.00279 NA NA t4081.T001585 RIP2.1 4 Time to ripe interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y02_52855746 NA 2 51182657 0 Y02_52920159 2 52920159 0 176 - 188 2.7e-10 10.3389/fpls.2018.00279 NA NA t4081.T001586 RIP2.1 4 Time to ripe interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y02_52855746 NA 2 51182657 0 Y02_52920159 2 52920159 0 176 - 188 1.62e-11 10.3389/fpls.2018.00279 NA NA t4081.T001587 RIP3.1 4 Time to ripe interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y03_43631616 NA 3 43631616 0 Y03_61927295 3 62457723 0 124 - 154 6.61e-05 10.3389/fpls.2018.00279 NA NA t4081.T001588 RIP3.2 4 Time to ripe interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y03_65831575 NA 3 63932680 0 Y03_66097622 3 66923413 0 168 - 196 0.000459 10.3389/fpls.2018.00279 NA NA t4081.T001589 RIP4.1 4 Time to ripe interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y04_892348 NA 4 117211 0 Y04_928038 4 1329736 0 0 - 17.94 0.000207 10.3389/fpls.2018.00279 NA NA t4081.T001590 RIP6.1 4 Time to ripe interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y06_45218536 NA 6 41977944 0 Y06_45401935 6 47277960 0 96 - 128 0.000959 10.3389/fpls.2018.00279 NA NA t4081.T001591 RIP9.1 4 Time to ripe interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y09_02673326 NA 9 2286674 0 Y09_2926053 9 4550994 0 26.72 - 78 0.000772 10.3389/fpls.2018.00279 NA NA t4081.T001592 RIP9.1 4 Time to ripe interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y09_04289476 NA 9 4289476 0 Y09_04316025 9 11384066 0 58 - 92 0.000771 10.3389/fpls.2018.00279 NA NA t4081.T001593 RIP10.1 4 Time to ripe interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y10_1166916 NA 10 22100 0 Y10_01323966 10 2216078 0 0 - 18 5.85e-05 10.3389/fpls.2018.00279 NA NA t4081.T001594 RIP10.1 4 Time to ripe interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y10_02344795 NA 10 164588 0 Y10_3586564 10 5025642 0 5.25 - 48 0.00021 10.3389/fpls.2018.00279 NA NA t4081.T001595 RIP12.1 4 Time to ripe interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y12_4892313 NA 12 3246101 0 Y12_5047381 12 38647373 0 42 - 76 0.000533 10.3389/fpls.2018.00279 NA NA t4081.T001596 SSC1.1 5 Sugar content interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y01_77656130 NA 1 75855371 0 Y01_82578583 1 83434428 0 42 - 88 0.00082 10.3389/fpls.2018.00279 NA NA t4081.T001597 SSC1.2 5 Sugar content interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y01_97105238 NA 1 97105238 0 Y01_97391336 1 98443258 0 198 - 214.45 0.000735 10.3389/fpls.2018.00279 NA NA t4081.T001598 SSC2.1 5 Sugar content interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y02_45447408 NA 2 44163100 0 Y02_45645810 2 49678118 0 124.29 - 159.14 0.000825 10.3389/fpls.2018.00279 NA NA t4081.T001599 SSC3.1 5 Sugar content interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y03_68995959 NA 3 66339796 0 Y03_69010838 3 70741861 0 190.06 - 215.2 0.000347 10.3389/fpls.2018.00279 NA NA t4081.T001600 SSC4.1 5 Sugar content interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y04_60952746 NA 4 59787424 0 Y04_61094261 4 62837100 0 100.71 - 142 0.000138 10.3389/fpls.2018.00279 NA NA t4081.T001601 SSC4.1 5 Sugar content interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y04_61842938 NA 4 61281208 0 Y04_62002311 4 63212563 0 120 - 142.51 0.000128 10.3389/fpls.2018.00279 NA NA t4081.T001602 SSC4.1 5 Sugar content interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y04_61842938 NA 4 58899010 0 Y04_62002311 4 62837100 0 88 - 142 0.0009 10.3389/fpls.2018.00279 NA NA t4081.T001603 SSC7.1 5 Sugar content interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y07_5490176 NA 7 2952220 0 Y07_6096064 7 57328066 0 52.81 - 88 0.000242 10.3389/fpls.2018.00279 NA NA t4081.T001604 SSC10.1 5 Sugar content interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y10_1707763 NA 10 22100 0 Y10_02216078 10 5025642 0 0 - 44 0.000282 10.3389/fpls.2018.00279 NA NA t4081.T001605 SSC11.1 5 Sugar content interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_41466599 NA 11 7241787 0 Y11_39071789 11 51851128 0 98 - 113.75 0.000417 10.3389/fpls.2018.00279 NA NA t4081.T001606 SSC11.2 5 Sugar content interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_55578287 NA 11 54547959 0 Y11_55755602 11 56105593 0 155.27 - 183.33 9.56e-05 10.3389/fpls.2018.00279 NA NA t4081.T001607 SSC11.2 5 Sugar content interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_55578287 NA 11 54093262 0 Y11_55755602 11 56105593 0 148 - 183.33 0.000976 10.3389/fpls.2018.00279 NA NA t4081.T001608 SSC11.2 5 Sugar content interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y11_55578287 NA 11 54547959 0 Y11_55755602 11 56105593 0 155.27 - 183.33 4.4e-05 10.3389/fpls.2018.00279 NA NA t4081.T001609 SSC12.1 5 Sugar content interval mapping MAGIC population Multi-parent Advanced Generation Inter-cross (MAGIC) population Y12_62976697 NA 12 62604123 0 Y12_63690753 12 64125346 0 110 - 143.3 0.000326 10.3389/fpls.2018.00279 NA NA t4081.T001610 Solyc01g005370 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_2 NA 1 259974 0 0 0 6.16234893501503 10.3390/genes11111387 NA NA t4081.T001611 Solyc01g006530 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_7 NA 1 1116398 0 0 0 1.54264347450718 10.3390/genes11111387 NA NA t4081.T001612 Solyc01g009420 4 INFLORESCENCE GWAS_QTCAT 126 cultivated tomato accessions accession ch1_17 NA 1 3635071 0 0 0 0.00895977474514 10.3390/genes11111387 NA NA t4081.T001613 Solyc01g010440 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 1.69948856420591 10.3390/genes11111387 NA NA t4081.T001614 Solyc01g010440 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 0.02152900715375 10.3390/genes11111387 NA NA t4081.T001615 Solyc01g010440 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 3.1738153329701e 10.3390/genes11111387 NA NA t4081.T001616 Solyc01g010440 4 PHENOLOGY GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 3.47440729978509 10.3390/genes11111387 NA NA t4081.T001617 Solyc01g010440 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 0.01355274774794 10.3390/genes11111387 NA NA t4081.T001618 Solyc01g010440 4 PHENOLOGY GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 0.00034636697276 10.3390/genes11111387 NA NA t4081.T001619 Solyc01g010440 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 8.43848046066996 10.3390/genes11111387 NA NA t4081.T001620 Solyc01g010440 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 0.02483997414966 10.3390/genes11111387 NA NA t4081.T001621 Solyc01g010440 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 0.00023789779586 10.3390/genes11111387 NA NA t4081.T001622 Solyc01g010440 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 4.90277447888116 10.3390/genes11111387 NA NA t4081.T001623 Solyc01g010440 4 LEAF_TRAIT GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 2.70535228468412 10.3390/genes11111387 NA NA t4081.T001624 Solyc01g010440 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 0.00112493635728 10.3390/genes11111387 NA NA t4081.T001625 Solyc01g010440 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 0.00942010063683 10.3390/genes11111387 NA NA t4081.T001626 Solyc01g010440 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 1.52132123042344 10.3390/genes11111387 NA NA t4081.T001627 Solyc01g010440 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 0.01587196516654 10.3390/genes11111387 NA NA t4081.T001628 Solyc01g010440 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 4.35516269843485 10.3390/genes11111387 NA NA t4081.T001629 Solyc01g010440 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 0.01331122281182 10.3390/genes11111387 NA NA t4081.T001630 Solyc01g010440 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 0.01462469143391 10.3390/genes11111387 NA NA t4081.T001631 Solyc01g010440 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 0.02166193126484 10.3390/genes11111387 NA NA t4081.T001632 Solyc01g010440 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 1.68009150446938 10.3390/genes11111387 NA NA t4081.T001633 Solyc01g010440 4 PHENOLOGY GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 2.62414994834985 10.3390/genes11111387 NA NA t4081.T001634 Solyc01g010440 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 8.51627614184826 10.3390/genes11111387 NA NA t4081.T001635 Solyc01g010440 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 4.08797599117563 10.3390/genes11111387 NA NA t4081.T001636 Solyc01g010440 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_22 NA 1 5346991 0 0 0 1.20562634720435 10.3390/genes11111387 NA NA t4081.T001637 Solyc01g011350 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_23 NA 1 8689986 0 0 0 0.02483997414966 10.3390/genes11111387 NA NA t4081.T001638 Solyc01g044350 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_24 NA 1 38276275 0 0 0 0.02483997414966 10.3390/genes11111387 NA NA t4081.T001639 Solyc01g044350 4 LEAF_TRAIT GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_24 NA 1 38276275 0 0 0 3.3386373126031e 10.3390/genes11111387 NA NA t4081.T001640 Solyc01g066980 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_27 NA 1 67703584 0 0 0 0.02483997414966 10.3390/genes11111387 NA NA t4081.T001641 Solyc01g079760 5 FRUIT_QUALITY GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch1_38 NA 1 71424492 0 0 0 3.75528947606021 10.3390/genes11111387 NA NA t4081.T001642 Solyc01g079760 5 FRUIT_QUALITY GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_38 NA 1 71424492 0 0 0 6.89878738523207 10.3390/genes11111387 NA NA t4081.T001643 Solyc01g079760 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_38 NA 1 71424492 0 0 0 1.26574357120463 10.3390/genes11111387 NA NA t4081.T001644 Solyc01g079780 5 FRUIT_QUALITY GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch1_39 NA 1 71427339 0 0 0 3.75528947606021 10.3390/genes11111387 NA NA t4081.T001645 Solyc01g080080 5 FRUIT_QUALITY GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch1_40 NA 1 71755560 0 0 0 8.17458302651257 10.3390/genes11111387 NA NA t4081.T001646 Solyc01g080080 5 FRUIT_QUALITY GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_40 NA 1 71755560 0 0 0 7.02950708504861 10.3390/genes11111387 NA NA t4081.T001647 Solyc01g080080 5 FRUIT_QUALITY GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_44 NA 1 72431970 0 0 0 2.4031212532997e 10.3390/genes11111387 NA NA t4081.T001648 Solyc01g080080 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_44 NA 1 72431970 0 0 0 7.29416715541773 10.3390/genes11111387 NA NA t4081.T001649 Solyc01g087880 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_58 NA 1 74515570 0 0 0 8.13451053031632 10.3390/genes11111387 NA NA t4081.T001650 Solyc01g090230 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_64 NA 1 75638524 0 0 0 1.71587604867181 10.3390/genes11111387 NA NA t4081.T001651 Solyc01g095210 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_69 NA 1 78309987 0 0 0 8.51797531535196 10.3390/genes11111387 NA NA t4081.T001652 Solyc01g095280 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_70 NA 1 78359870 0 0 0 0.01583831619047 10.3390/genes11111387 NA NA t4081.T001653 Solyc01g095280 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_70 NA 1 78359870 0 0 0 1.23069707122984 10.3390/genes11111387 NA NA t4081.T001654 Solyc01g095280 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_70 NA 1 78359870 0 0 0 2.51985505439591 10.3390/genes11111387 NA NA t4081.T001655 Solyc01g095320 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_71 NA 1 78390713 0 0 0 0.01583831619047 10.3390/genes11111387 NA NA t4081.T001656 Solyc01g095320 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_71 NA 1 78390713 0 0 0 2.88492304333175 10.3390/genes11111387 NA NA t4081.T001657 Solyc01g098750 6 CLIMATE GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch1_80 NA 1 80944132 0 0 0 1.13929499211962 10.3390/genes11111387 NA NA t4081.T001658 Solyc01g098750 6 CLIMATE GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch1_80 NA 1 80944132 0 0 0 1.60712663736818 10.3390/genes11111387 NA NA t4081.T001659 Solyc01g098750 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_80 NA 1 80944132 0 0 0 2.61036636796653 10.3390/genes11111387 NA NA t4081.T001660 Solyc01g100350 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_96 NA 1 82175996 0 0 0 8.52336831357936 10.3390/genes11111387 NA NA t4081.T001661 Solyc01g100350 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_96 NA 1 82175996 0 0 0 7.79261369383392 10.3390/genes11111387 NA NA t4081.T001662 Solyc01g100380 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_99 NA 1 82189596 0 0 0 0.01764145862840 10.3390/genes11111387 NA NA t4081.T001663 Solyc01g100380 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_99 NA 1 82189596 0 0 0 0.00807614958870 10.3390/genes11111387 NA NA t4081.T001664 Solyc01g103780 4 INFLORESCENCE GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_119 NA 1 84065309 0 0 0 6.21599012898264 10.3390/genes11111387 NA NA t4081.T001665 Solyc01g107070 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_146 NA 1 86484250 0 0 0 0.01003017107384 10.3390/genes11111387 NA NA t4081.T001666 Solyc01g107070 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_146 NA 1 86484250 0 0 0 1.59156476953726 10.3390/genes11111387 NA NA t4081.T001667 Solyc01g108010 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch1_152 NA 1 87154775 0 0 0 8.07453140973901 10.3390/genes11111387 NA NA t4081.T001668 Solyc01g108010 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_152 NA 1 87154775 0 0 0 1.06859392773294 10.3390/genes11111387 NA NA t4081.T001669 Solyc01g108020 4 PLANT_GROWTH GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_153 NA 1 87161570 0 0 0 1.83469839865571 10.3390/genes11111387 NA NA t4081.T001670 Solyc01g108890 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_170 NA 1 87786998 0 0 0 2.21650133375806 10.3390/genes11111387 NA NA t4081.T001671 Solyc01g111420 5 FRUIT_QUALITY GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_196 NA 1 89436589 0 0 0 9.25479881746996 10.3390/genes11111387 NA NA t4081.T001672 Solyc01g111420 4 INFLORESCENCE GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_196 NA 1 89436589 0 0 0 2.41827967149012 10.3390/genes11111387 NA NA t4081.T001673 Solyc01g111720 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch1_203 NA 1 89651632 0 0 0 1.35674068334988 10.3390/genes11111387 NA NA t4081.T001674 Solyc02g005200 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_1 NA 2 1515231 0 0 0 0.01983552427804 10.3390/genes11111387 NA NA t4081.T001675 Solyc02g005200 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_1 NA 2 1515231 0 0 0 1.03650192886306 10.3390/genes11111387 NA NA t4081.T001676 Solyc02g021700 5 FRUIT_QUALITY GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_5 NA 2 14283187 0 0 0 9.68228273366895 10.3390/genes11111387 NA NA t4081.T001677 Solyc02g024050 5 FRUIT_SHAPE_DP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch2_6 NA 2 15571732 0 0 0 1.7691224523787e 10.3390/genes11111387 NA NA t4081.T001678 Solyc02g061840 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_7 NA 2 27933597 0 0 0 0.02554412801334 10.3390/genes11111387 NA NA t4081.T001679 Solyc02g064580 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_20 NA 2 30272528 0 0 0 0.04098357573878 10.3390/genes11111387 NA NA t4081.T001680 Solyc02g064580 4 INFLORESCENCE GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_21 NA 2 30272836 0 0 0 4.74913643143278 10.3390/genes11111387 NA NA t4081.T001681 Solyc02g071090 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession Ch2_111 NA 2 35156011 0 0 0 1.16716319054755 10.3390/genes11111387 NA NA t4081.T001682 Solyc02g071510 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_130 NA 2 35492749 0 0 0 2.14725246502781 10.3390/genes11111387 NA NA t4081.T001683 Solyc02g071510 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_130 NA 2 35492749 0 0 0 1.67421660652768 10.3390/genes11111387 NA NA t4081.T001684 Solyc02g071510 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_130 NA 2 35492749 0 0 0 9.06965826410942 10.3390/genes11111387 NA NA t4081.T001685 Solyc02g071510 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_130 NA 2 35492749 0 0 0 6.6732424741282e 10.3390/genes11111387 NA NA t4081.T001686 Solyc02g077710 4 LEAF_TRAIT GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_136 NA 2 37172733 0 0 0 1.36307910106266 10.3390/genes11111387 NA NA t4081.T001687 Solyc02g078550 5 FRUIT_SHAPE_CP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch2_139 NA 2 37791867 0 0 0 1.65160918957482 10.3390/genes11111387 NA NA t4081.T001688 Solyc02g078550 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_139 NA 2 37791867 0 0 0 4.72244496668663 10.3390/genes11111387 NA NA t4081.T001689 Solyc02g081700 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 0.02790126073561 10.3390/genes11111387 NA NA t4081.T001690 Solyc02g081700 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 1.53727338852005 10.3390/genes11111387 NA NA t4081.T001691 Solyc02g081700 5 FRUIT_QUALITY GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 5.27206913926193 10.3390/genes11111387 NA NA t4081.T001692 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 4.07193650231354 10.3390/genes11111387 NA NA t4081.T001693 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 0.03009025636573 10.3390/genes11111387 NA NA t4081.T001694 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 8.29760425193212 10.3390/genes11111387 NA NA t4081.T001695 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 1.6956788443341e 10.3390/genes11111387 NA NA t4081.T001696 Solyc02g081700 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 1.8977313197358e 10.3390/genes11111387 NA NA t4081.T001697 Solyc02g081700 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 9.40234628215144 10.3390/genes11111387 NA NA t4081.T001698 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 0.00020521669320 10.3390/genes11111387 NA NA t4081.T001699 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 4.19307053939956 10.3390/genes11111387 NA NA t4081.T001700 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 2.12528773248046 10.3390/genes11111387 NA NA t4081.T001701 Solyc02g081700 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 0.00889990412538 10.3390/genes11111387 NA NA t4081.T001702 Solyc02g081700 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 5.4940042959844e 10.3390/genes11111387 NA NA t4081.T001703 Solyc02g081700 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 1.08421124238573 10.3390/genes11111387 NA NA t4081.T001704 Solyc02g081700 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 3.02315299782432 10.3390/genes11111387 NA NA t4081.T001705 Solyc02g081700 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 1.96109143778376 10.3390/genes11111387 NA NA t4081.T001706 Solyc02g081700 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 1.42194634573238 10.3390/genes11111387 NA NA t4081.T001707 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 9.30393970511513 10.3390/genes11111387 NA NA t4081.T001708 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 1.91717649027535 10.3390/genes11111387 NA NA t4081.T001709 Solyc02g081700 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 0.00029439109831 10.3390/genes11111387 NA NA t4081.T001710 Solyc02g081700 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 7.70078784650514 10.3390/genes11111387 NA NA t4081.T001711 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 1.63304441236852 10.3390/genes11111387 NA NA t4081.T001712 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 8.99187165984803 10.3390/genes11111387 NA NA t4081.T001713 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 8.54575006233281 10.3390/genes11111387 NA NA t4081.T001714 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 4.58780072036904 10.3390/genes11111387 NA NA t4081.T001715 Solyc02g081700 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 5.19962251631915 10.3390/genes11111387 NA NA t4081.T001716 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 0.00595547490748 10.3390/genes11111387 NA NA t4081.T001717 Solyc02g081700 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 8.80622043669436 10.3390/genes11111387 NA NA t4081.T001718 Solyc02g081700 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 2.23291696913411 10.3390/genes11111387 NA NA t4081.T001719 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 1.22745918590745 10.3390/genes11111387 NA NA t4081.T001720 Solyc02g081700 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 1.79278232442553 10.3390/genes11111387 NA NA t4081.T001721 Solyc02g081700 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 5.06338960806844 10.3390/genes11111387 NA NA t4081.T001722 Solyc02g081700 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 3.12024185129992 10.3390/genes11111387 NA NA t4081.T001723 Solyc02g081700 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 4.61215712156209 10.3390/genes11111387 NA NA t4081.T001724 Solyc02g081700 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 1.67528858003735 10.3390/genes11111387 NA NA t4081.T001725 Solyc02g081700 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 1.11739752114275 10.3390/genes11111387 NA NA t4081.T001726 Solyc02g081700 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 1.11512337184536 10.3390/genes11111387 NA NA t4081.T001727 Solyc02g081700 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 2.67433345128844 10.3390/genes11111387 NA NA t4081.T001728 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 4.72117378183038 10.3390/genes11111387 NA NA t4081.T001729 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 6.49011797782855 10.3390/genes11111387 NA NA t4081.T001730 Solyc02g081700 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 2.74339455653783 10.3390/genes11111387 NA NA t4081.T001731 Solyc02g081700 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 4.09163606851766 10.3390/genes11111387 NA NA t4081.T001732 Solyc02g081700 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 1.51645510538454 10.3390/genes11111387 NA NA t4081.T001733 Solyc02g081700 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_151 NA 2 40135704 0 0 0 1.20697501633802 10.3390/genes11111387 NA NA t4081.T001734 Solyc02g082420 5 FRUIT_SHAPE_CP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch2_151 NA 2 40689846 0 0 0 7.31400538049718 10.3390/genes11111387 NA NA t4081.T001735 Solyc02g082800 4 PHENOLOGY GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_155 NA 2 41022127 0 0 0 3.21582268943114 10.3390/genes11111387 NA NA t4081.T001736 Solyc02g082800 4 PHENOLOGY GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_155 NA 2 41022127 0 0 0 3.95553034172351 10.3390/genes11111387 NA NA t4081.T001737 Solyc02g082800 4 LEAF_TRAIT GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_157 NA 2 41027419 0 0 0 4.34097002650007 10.3390/genes11111387 NA NA t4081.T001738 Solyc02g082800 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_158 NA 2 41028817 0 0 0 5.2785690821368e 10.3390/genes11111387 NA NA t4081.T001739 Solyc02g085520 5 FRUIT_SHAPE_CP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch2_182 NA 2 42956982 0 0 0 4.82982952580507 10.3390/genes11111387 NA NA t4081.T001740 Solyc02g092130 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch2_232 NA 2 47908840 0 0 0 1.68504235802966 10.3390/genes11111387 NA NA t4081.T001741 Solyc03g005920 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_9 NA 3 626913 0 0 0 2.0096165046616e 10.3390/genes11111387 NA NA t4081.T001742 Solyc03g006510 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_13 NA 3 1091380 0 0 0 0.00035393334829 10.3390/genes11111387 NA NA t4081.T001743 Solyc03g006510 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_13 NA 3 1091380 0 0 0 0.00041889315827 10.3390/genes11111387 NA NA t4081.T001744 Solyc03g006510 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_13 NA 3 1091380 0 0 0 8.23166972404062 10.3390/genes11111387 NA NA t4081.T001745 Solyc03g006510 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_13 NA 3 1091380 0 0 0 0.00073828125201 10.3390/genes11111387 NA NA t4081.T001746 Solyc03g007000 4 LEAF_TRAIT GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_18 NA 3 1554307 0 0 0 5.97704412081685 10.3390/genes11111387 NA NA t4081.T001747 Solyc03g007610 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_21 NA 3 2147574 0 0 0 2.34488204190913 10.3390/genes11111387 NA NA t4081.T001748 Solyc03g019800 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_24 NA 3 6728222 0 0 0 0.02625064688336 10.3390/genes11111387 NA NA t4081.T001749 Solyc03g019800 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_24 NA 3 6728222 0 0 0 0.00058952206913 10.3390/genes11111387 NA NA t4081.T001750 Solyc03g019810 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_25 NA 3 6736184 0 0 0 0.02625064688336 10.3390/genes11111387 NA NA t4081.T001751 Solyc03g019810 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_25 NA 3 6736184 0 0 0 0.00058952206913 10.3390/genes11111387 NA NA t4081.T001752 Solyc03g031920 4 PHENOLOGY GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_33 NA 3 8663868 0 0 0 1.82637435014463 10.3390/genes11111387 NA NA t4081.T001753 Solyc03g033580 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_40 NA 3 9416641 0 0 0 0.01889372000721 10.3390/genes11111387 NA NA t4081.T001754 Solyc03g080140 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_45 NA 3 45594113 0 0 0 4.7546092312092e 10.3390/genes11111387 NA NA t4081.T001755 Solyc03g080140 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_45 NA 3 45594113 0 0 0 3.81599047987152 10.3390/genes11111387 NA NA t4081.T001756 Solyc03g080140 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_45 NA 3 45594113 0 0 0 5.25119104077832 10.3390/genes11111387 NA NA t4081.T001757 Solyc03g080140 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_45 NA 3 45594113 0 0 0 1.34703076587043 10.3390/genes11111387 NA NA t4081.T001758 Solyc03g080140 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_45 NA 3 45594113 0 0 0 5.25119104077832 10.3390/genes11111387 NA NA t4081.T001759 Solyc03g097210 4 LEAF_TRAIT GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_56 NA 3 52974105 0 0 0 6.60443945405701 10.3390/genes11111387 NA NA t4081.T001760 Solyc03g111250 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_68 NA 3 55917283 0 0 0 0.02625064688336 10.3390/genes11111387 NA NA t4081.T001761 Solyc03g111250 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_68 NA 3 55917283 0 0 0 0.00044467987763 10.3390/genes11111387 NA NA t4081.T001762 Solyc03g111250 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_68 NA 3 55917283 0 0 0 0.00058952206913 10.3390/genes11111387 NA NA t4081.T001763 Solyc03g111250 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_68 NA 3 55917283 0 0 0 1.74295189221958 10.3390/genes11111387 NA NA t4081.T001764 Solyc03g111390 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_69 NA 3 56037650 0 0 0 0.02625064688336 10.3390/genes11111387 NA NA t4081.T001765 Solyc03g111390 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_69 NA 3 56037650 0 0 0 0.00044467987763 10.3390/genes11111387 NA NA t4081.T001766 Solyc03g111390 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_69 NA 3 56037650 0 0 0 0.00058952206913 10.3390/genes11111387 NA NA t4081.T001767 Solyc03g112050 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_71 NA 3 56643506 0 0 0 1.84480074384627 10.3390/genes11111387 NA NA t4081.T001768 Solyc03g113000 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_84 NA 3 57356611 0 0 0 2.01914646067749 10.3390/genes11111387 NA NA t4081.T001769 Solyc03g113390 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_91 NA 3 57595512 0 0 0 2.1072564545088e 10.3390/genes11111387 NA NA t4081.T001770 Solyc03g113770 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_102 NA 3 57876193 0 0 0 0.00766859956236 10.3390/genes11111387 NA NA t4081.T001771 Solyc03g113770 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_102 NA 3 57876193 0 0 0 0.00443642375305 10.3390/genes11111387 NA NA t4081.T001772 Solyc03g113770 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_102 NA 3 57876193 0 0 0 4.55343492965398 10.3390/genes11111387 NA NA t4081.T001773 Solyc03g113800 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_103 NA 3 57894959 0 0 0 0.00443642375305 10.3390/genes11111387 NA NA t4081.T001774 Solyc03g113800 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_103 NA 3 57894959 0 0 0 0.00766859956236 10.3390/genes11111387 NA NA t4081.T001775 Solyc03g113800 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_113 NA 3 58161111 0 0 0 4.23877628597146 10.3390/genes11111387 NA NA t4081.T001776 Solyc03g114370 5 FRUIT_QUALITY GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_122 NA 3 58427436 0 0 0 3.12955228615034 10.3390/genes11111387 NA NA t4081.T001777 Solyc03g114370 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_122 NA 3 58427436 0 0 0 2.22909631409677 10.3390/genes11111387 NA NA t4081.T001778 Solyc03g114580 5 FRUIT_QUALITY GWAS_QTCAT 126 cultivated tomato accessions accession ch3_128 NA 3 58578164 0 0 0 0.00014446086086 10.3390/genes11111387 NA NA t4081.T001779 Solyc03g114580 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_128 NA 3 58578164 0 0 0 9.32612253691302 10.3390/genes11111387 NA NA t4081.T001780 Solyc03g114580 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_128 NA 3 58578164 0 0 0 0.00972936545407 10.3390/genes11111387 NA NA t4081.T001781 Solyc03g114580 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_128 NA 3 58578164 0 0 0 1.57175957517522 10.3390/genes11111387 NA NA t4081.T001782 Solyc03g115730 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_156 NA 3 59418148 0 0 0 4.2781137395225e 10.3390/genes11111387 NA NA t4081.T001783 Solyc03g117760 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_212 NA 3 60850262 0 0 0 1.64540035040573 10.3390/genes11111387 NA NA t4081.T001784 Solyc03g117760 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_212 NA 3 60850262 0 0 0 4.55044748389562 10.3390/genes11111387 NA NA t4081.T001785 Solyc03g117870 4 LEAF_TRAIT GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_223 NA 3 60934835 0 0 0 7.47672055702244 10.3390/genes11111387 NA NA t4081.T001786 Solyc03g118190 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_234 NA 3 61187228 0 0 0 0.02042449998572 10.3390/genes11111387 NA NA t4081.T001787 Solyc03g118190 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_234 NA 3 61187228 0 0 0 1.03217522883778 10.3390/genes11111387 NA NA t4081.T001788 Solyc03g118190 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_234 NA 3 61187228 0 0 0 2.59467114363272 10.3390/genes11111387 NA NA t4081.T001789 Solyc03g118190 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_234 NA 3 61187228 0 0 0 9.42289395949031 10.3390/genes11111387 NA NA t4081.T001790 Solyc03g118190 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_234 NA 3 61187228 0 0 0 2.60038083916167 10.3390/genes11111387 NA NA t4081.T001791 Solyc03g118190 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_234 NA 3 61187228 0 0 0 1.10424218186389 10.3390/genes11111387 NA NA t4081.T001792 Solyc03g118240 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_235 NA 3 61215903 0 0 0 0.02042449998572 10.3390/genes11111387 NA NA t4081.T001793 Solyc03g118800 4 INFLORESCENCE GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_248 NA 3 61746166 0 0 0 5.18817049369269 10.3390/genes11111387 NA NA t4081.T001794 Solyc03g119130 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_253 NA 3 61878102 0 0 0 0.01208370640014 10.3390/genes11111387 NA NA t4081.T001795 Solyc03g119130 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_253 NA 3 61878102 0 0 0 0.01148832082376 10.3390/genes11111387 NA NA t4081.T001796 Solyc03g119130 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_253 NA 3 61878102 0 0 0 0.01978899956957 10.3390/genes11111387 NA NA t4081.T001797 Solyc03g119130 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_253 NA 3 61878102 0 0 0 0.01733860057852 10.3390/genes11111387 NA NA t4081.T001798 Solyc03g119130 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_255 NA 3 61878410 0 0 0 0.01208370640014 10.3390/genes11111387 NA NA t4081.T001799 Solyc03g119130 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_255 NA 3 61878410 0 0 0 0.01148832082376 10.3390/genes11111387 NA NA t4081.T001800 Solyc03g119130 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_255 NA 3 61878410 0 0 0 0.01978899956957 10.3390/genes11111387 NA NA t4081.T001801 Solyc03g119130 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_255 NA 3 61878410 0 0 0 0.01733860057852 10.3390/genes11111387 NA NA t4081.T001802 Solyc03g119130 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_257 NA 3 61881530 0 0 0 0.01208370640014 10.3390/genes11111387 NA NA t4081.T001803 Solyc03g119130 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_257 NA 3 61881530 0 0 0 0.01148832082376 10.3390/genes11111387 NA NA t4081.T001804 Solyc03g119130 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_257 NA 3 61881530 0 0 0 0.01978899956957 10.3390/genes11111387 NA NA t4081.T001805 Solyc03g119130 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_257 NA 3 61881530 0 0 0 0.01733860057852 10.3390/genes11111387 NA NA t4081.T001806 Solyc03g119380 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_262 NA 3 62060157 0 0 0 0.01208370640014 10.3390/genes11111387 NA NA t4081.T001807 Solyc03g119380 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_262 NA 3 62060157 0 0 0 0.03216841278869 10.3390/genes11111387 NA NA t4081.T001808 Solyc03g119380 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_262 NA 3 62060157 0 0 0 0.01978899956957 10.3390/genes11111387 NA NA t4081.T001809 Solyc03g119380 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_262 NA 3 62060157 0 0 0 0.01026549132139 10.3390/genes11111387 NA NA t4081.T001810 Solyc03g119380 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_262 NA 3 62060157 0 0 0 0.01733860057852 10.3390/genes11111387 NA NA t4081.T001811 Solyc03g119380 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_262 NA 3 62060157 0 0 0 1.09167260208577 10.3390/genes11111387 NA NA t4081.T001812 Solyc03g120010 6 CLIMATE GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch3_270 NA 3 62573475 0 0 0 1.3937101162496e 10.3390/genes11111387 NA NA t4081.T001813 Solyc03g120010 5 FRUIT_QUALITY GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_270 NA 3 62573475 0 0 0 2.16566212380843 10.3390/genes11111387 NA NA t4081.T001814 Solyc03g121000 6 CLIMATE GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch3_275 NA 3 63293946 0 0 0 1.3937101162496e 10.3390/genes11111387 NA NA t4081.T001815 Solyc03g121000 6 CLIMATE GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch3_276 NA 3 63294161 0 0 0 1.39370967796505 10.3390/genes11111387 NA NA t4081.T001816 Solyc03g121660 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_277 NA 3 63813053 0 0 0 2.60897387316422 10.3390/genes11111387 NA NA t4081.T001817 Solyc03g121660 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_277 NA 3 63813053 0 0 0 8.4804858613527e 10.3390/genes11111387 NA NA t4081.T001818 Solyc03g121660 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_277 NA 3 63813053 0 0 0 1.85952119402646 10.3390/genes11111387 NA NA t4081.T001819 Solyc03g121660 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_277 NA 3 63813053 0 0 0 3.6263936025033e 10.3390/genes11111387 NA NA t4081.T001820 Solyc03g121660 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_277 NA 3 63813053 0 0 0 1.59778860132536 10.3390/genes11111387 NA NA t4081.T001821 Solyc03g121660 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_277 NA 3 63813053 0 0 0 1.84833008129964 10.3390/genes11111387 NA NA t4081.T001822 Solyc03g121660 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_277 NA 3 63813053 0 0 0 1.71017378072205 10.3390/genes11111387 NA NA t4081.T001823 Solyc03g121660 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch3_277 NA 3 63813053 0 0 0 2.06285488656636 10.3390/genes11111387 NA NA t4081.T001824 Solyc03g123530 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch3_288 NA 3 64418254 0 0 0 0.03736259227914 10.3390/genes11111387 NA NA t4081.T001825 Solyc04g007280 4 LEAF_TRAIT GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_2 NA 4 993580 0 0 0 6.56042842293058 10.3390/genes11111387 NA NA t4081.T001826 Solyc04g008590 4 LEAF_TRAIT GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_18 NA 4 2201058 0 0 0 7.84228091577652 10.3390/genes11111387 NA NA t4081.T001827 Solyc04g009360 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch4_28 NA 4 2799401 0 0 0 0.03917710502334 10.3390/genes11111387 NA NA t4081.T001828 Solyc04g009360 5 FRUIT_SHAPE_DP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch4_28 NA 4 2799401 0 0 0 5.07450570411557 10.3390/genes11111387 NA NA t4081.T001829 Solyc04g009360 5 FRUIT_SHAPE_DP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch4_28 NA 4 2799401 0 0 0 7.71824415717188 10.3390/genes11111387 NA NA t4081.T001830 Solyc04g009360 5 FRUIT_SHAPE_DP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch4_28 NA 4 2799401 0 0 0 7.26985268769305 10.3390/genes11111387 NA NA t4081.T001831 Solyc04g009360 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_28 NA 4 2799401 0 0 0 1.23013528851994 10.3390/genes11111387 NA NA t4081.T001832 Solyc04g009360 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_28 NA 4 2799401 0 0 0 1.72894226600708 10.3390/genes11111387 NA NA t4081.T001833 Solyc04g009360 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_28 NA 4 2799401 0 0 0 4.1841595291116e 10.3390/genes11111387 NA NA t4081.T001834 Solyc04g009360 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_28 NA 4 2799401 0 0 0 7.70065398533876 10.3390/genes11111387 NA NA t4081.T001835 Solyc04g009500 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch4_31 NA 4 2927162 0 0 0 0.00609464258431 10.3390/genes11111387 NA NA t4081.T001836 Solyc04g009500 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch4_31 NA 4 2927162 0 0 0 0.00259226101341 10.3390/genes11111387 NA NA t4081.T001837 Solyc04g009500 5 FRUIT_QUALITY GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_31 NA 4 2927162 0 0 0 1.21110826363894 10.3390/genes11111387 NA NA t4081.T001838 Solyc04g009500 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_31 NA 4 2927162 0 0 0 4.80967984103059 10.3390/genes11111387 NA NA t4081.T001839 Solyc04g014250 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch4_48 NA 4 4550810 0 0 0 1.00442293126612 10.3390/genes11111387 NA NA t4081.T001840 Solyc04g014250 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch4_48 NA 4 4550810 0 0 0 1.09151376800544 10.3390/genes11111387 NA NA t4081.T001841 Solyc04g014250 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_48 NA 4 4550810 0 0 0 4.12553419170616 10.3390/genes11111387 NA NA t4081.T001842 Solyc04g014250 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_48 NA 4 4550810 0 0 0 9.21431045284617 10.3390/genes11111387 NA NA t4081.T001843 Solyc04g054310 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_127 NA 4 51441990 0 0 0 2.11941740795304 10.3390/genes11111387 NA NA t4081.T001844 Solyc04g070990 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_171 NA 4 55438552 0 0 0 1.38574354105881 10.3390/genes11111387 NA NA t4081.T001845 Solyc04g070990 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_171 NA 4 55438552 0 0 0 1.11786469091494 10.3390/genes11111387 NA NA t4081.T001846 Solyc04g072390 4 INFLORESCENCE GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_216 NA 4 57013443 0 0 0 1.02485749747256 10.3390/genes11111387 NA NA t4081.T001847 Solyc04g072670 5 FRUIT_SHAPE_CP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch4_228 NA 4 57224323 0 0 0 1.27300428688263 10.3390/genes11111387 NA NA t4081.T001848 Solyc04g072670 4 PHENOLOGY GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_228 NA 4 57224323 0 0 0 1.84906040940395 10.3390/genes11111387 NA NA t4081.T001849 Solyc04g072670 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_228 NA 4 57224323 0 0 0 3.31590344976772 10.3390/genes11111387 NA NA t4081.T001850 Solyc04g080260 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_313 NA 4 62091588 0 0 0 1.27546019094629 10.3390/genes11111387 NA NA t4081.T001851 Solyc04g080260 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_313 NA 4 62091588 0 0 0 1.0789230172847e 10.3390/genes11111387 NA NA t4081.T001852 Solyc04g080540 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_322 NA 4 62270652 0 0 0 4.95164560694168 10.3390/genes11111387 NA NA t4081.T001853 Solyc04g080590 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_326 NA 4 62295546 0 0 0 1.62437498486108 10.3390/genes11111387 NA NA t4081.T001854 Solyc04g080590 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_326 NA 4 62295546 0 0 0 3.29960824738135 10.3390/genes11111387 NA NA t4081.T001855 Solyc04g080730 4 LEAF_TRAIT GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_329 NA 4 62427031 0 0 0 2.53771781695663 10.3390/genes11111387 NA NA t4081.T001856 Solyc04g081730 6 CLIMATE GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch4_347 NA 4 63257705 0 0 0 7.27611743628657 10.3390/genes11111387 NA NA t4081.T001857 Solyc04g081730 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_347 NA 4 63257705 0 0 0 1.66346082427324 10.3390/genes11111387 NA NA t4081.T001858 Solyc04g081730 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_347 NA 4 63257705 0 0 0 1.56515803185495 10.3390/genes11111387 NA NA t4081.T001859 Solyc04g081730 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_347 NA 4 63257705 0 0 0 1.12172438686002 10.3390/genes11111387 NA NA t4081.T001860 Solyc04g081730 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch4_347 NA 4 63257705 0 0 0 1.116960884302e- 10.3390/genes11111387 NA NA t4081.T001861 Solyc04g081900 6 CLIMATE GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch4_355 NA 4 63359710 0 0 0 7.27611743628657 10.3390/genes11111387 NA NA t4081.T001862 Solyc05g005800 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch5_2 NA 5 615141 0 0 0 4.73779239907914 10.3390/genes11111387 NA NA t4081.T001863 Solyc05g005800 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch5_2 NA 5 615141 0 0 0 3.55378603408355 10.3390/genes11111387 NA NA t4081.T001864 Solyc05g005800 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch5_2 NA 5 615141 0 0 0 2.84542244100321 10.3390/genes11111387 NA NA t4081.T001865 Solyc05g005800 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch5_2 NA 5 615141 0 0 0 1.909564944155e- 10.3390/genes11111387 NA NA t4081.T001866 Solyc05g005800 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch5_2 NA 5 615141 0 0 0 9.29909200875225 10.3390/genes11111387 NA NA t4081.T001867 Solyc05g008110 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_7 NA 5 2529111 0 0 0 3.50282220016446 10.3390/genes11111387 NA NA t4081.T001868 Solyc05g008450 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_13 NA 5 2805024 0 0 0 4.57237256405777 10.3390/genes11111387 NA NA t4081.T001869 Solyc05g008910 5 FRUIT_QUALITY GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_15 NA 5 3124496 0 0 0 1.98680683691033 10.3390/genes11111387 NA NA t4081.T001870 Solyc05g008910 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_15 NA 5 3124496 0 0 0 6.04585281440982 10.3390/genes11111387 NA NA t4081.T001871 Solyc05g013030 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_54 NA 5 6146157 0 0 0 2.87935694798639 10.3390/genes11111387 NA NA t4081.T001872 Solyc05g013620 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_58 NA 5 6930659 0 0 0 2.66163409480611 10.3390/genes11111387 NA NA t4081.T001873 Solyc05g014390 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch5_77 NA 5 8244923 0 0 0 0.01226492617345 10.3390/genes11111387 NA NA t4081.T001874 Solyc05g015510 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_85 NA 5 10767718 0 0 0 1.2743725307032e 10.3390/genes11111387 NA NA t4081.T001875 Solyc05g015610 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch5_92 NA 5 11528128 0 0 0 0.03376373765457 10.3390/genes11111387 NA NA t4081.T001876 Solyc05g015610 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch5_92 NA 5 11528128 0 0 0 0.04977378754396 10.3390/genes11111387 NA NA t4081.T001877 Solyc05g018610 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_115 NA 5 22506319 0 0 0 1.19910549546236 10.3390/genes11111387 NA NA t4081.T001878 Solyc05g047460 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_178 NA 5 58052550 0 0 0 2.15538469307097 10.3390/genes11111387 NA NA t4081.T001879 Solyc05g047520 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_179 NA 5 58152874 0 0 0 1.15075405194138 10.3390/genes11111387 NA NA t4081.T001880 Solyc05g052980 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_209 NA 5 62296657 0 0 0 8.44793183986352 10.3390/genes11111387 NA NA t4081.T001881 Solyc05g053130 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_211 NA 5 62388401 0 0 0 2.01282351441289 10.3390/genes11111387 NA NA t4081.T001882 Solyc05g054070 4 LEAF_TRAIT GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_224 NA 5 63198035 0 0 0 1.05429768904831 10.3390/genes11111387 NA NA t4081.T001883 Solyc05g055160 6 CLIMATE GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch5_237 NA 5 64069703 0 0 0 1.7204979893239e 10.3390/genes11111387 NA NA t4081.T001884 Solyc05g055160 6 CLIMATE GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch5_238 NA 5 64069769 0 0 0 1.7204979893239e 10.3390/genes11111387 NA NA t4081.T001885 Solyc05g055160 6 CLIMATE GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch5_239 NA 5 64070322 0 0 0 1.72049815458991 10.3390/genes11111387 NA NA t4081.T001886 Solyc05g055160 6 CLIMATE GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch5_240 NA 5 64070454 0 0 0 3.6665304213464e 10.3390/genes11111387 NA NA t4081.T001887 Solyc05g055160 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_240 NA 5 64070454 0 0 0 1.12535194727387 10.3390/genes11111387 NA NA t4081.T001888 Solyc05g055160 6 CLIMATE GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch5_241 NA 5 64070956 0 0 0 1.72049815458991 10.3390/genes11111387 NA NA t4081.T001889 Solyc05g056000 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch5_249 NA 5 64544384 0 0 0 0.00076360841565 10.3390/genes11111387 NA NA t4081.T001890 Solyc05g056000 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch5_249 NA 5 64544384 0 0 0 0.01196573411940 10.3390/genes11111387 NA NA t4081.T001891 Solyc05g056000 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch5_249 NA 5 64544384 0 0 0 5.66136971610275 10.3390/genes11111387 NA NA t4081.T001892 Solyc05g056000 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch5_249 NA 5 64544384 0 0 0 0.00043734045506 10.3390/genes11111387 NA NA t4081.T001893 Solyc05g056000 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_249 NA 5 64544384 0 0 0 4.45615729603956 10.3390/genes11111387 NA NA t4081.T001894 Solyc05g056000 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_249 NA 5 64544384 0 0 0 1.0700042448111e 10.3390/genes11111387 NA NA t4081.T001895 Solyc05g056000 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_249 NA 5 64544384 0 0 0 6.58233787029136 10.3390/genes11111387 NA NA t4081.T001896 Solyc05g056000 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_249 NA 5 64544384 0 0 0 6.24621517569577 10.3390/genes11111387 NA NA t4081.T001897 Solyc05g056000 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_249 NA 5 64544384 0 0 0 7.69386850117928 10.3390/genes11111387 NA NA t4081.T001898 Solyc05g056000 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_249 NA 5 64544384 0 0 0 5.47468514834125 10.3390/genes11111387 NA NA t4081.T001899 Solyc05g056270 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_258 NA 5 64767398 0 0 0 1.11241281578118 10.3390/genes11111387 NA NA t4081.T001900 Solyc05g056270 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch5_258 NA 5 64767398 0 0 0 4.4352041029701e 10.3390/genes11111387 NA NA t4081.T001901 Solyc06g008960 4 PLANT_GROWTH GWAS_FarmCPU 126 cultivated tomato accessions accession ch6_30 NA 6 2893737 0 0 0 4.22251166227738 10.3390/genes11111387 NA NA t4081.T001902 Solyc06g009360 4 INFLORESCENCE GWAS_FarmCPU 126 cultivated tomato accessions accession ch6_38 NA 6 3293928 0 0 0 1.49034982564528 10.3390/genes11111387 NA NA t4081.T001903 Solyc06g016750 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch6_43 NA 6 9469658 0 0 0 1.65074839706199 10.3390/genes11111387 NA NA t4081.T001904 Solyc06g048890 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch6_47 NA 6 28410513 0 0 0 0.04939750461327 10.3390/genes11111387 NA NA t4081.T001905 Solyc06g053220 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch6_50 NA 6 32439828 0 0 0 6.42412360683997 10.3390/genes11111387 NA NA t4081.T001906 Solyc06g060720 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch6_57 NA 6 35125180 0 0 0 0.03772567056510 10.3390/genes11111387 NA NA t4081.T001907 Solyc06g060720 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch6_57 NA 6 35125180 0 0 0 7.8137081131495e 10.3390/genes11111387 NA NA t4081.T001908 Solyc06g060720 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch6_57 NA 6 35125180 0 0 0 4.29670603958918 10.3390/genes11111387 NA NA t4081.T001909 Solyc06g062500 5 FRUIT_QUALITY GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch6_61 NA 6 35821507 0 0 0 9.98000367659409 10.3390/genes11111387 NA NA t4081.T001910 Solyc06g062500 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch6_61 NA 6 35821507 0 0 0 3.83872791654699 10.3390/genes11111387 NA NA t4081.T001911 Solyc06g062660 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch6_63 NA 6 35929333 0 0 0 0.01277568891598 10.3390/genes11111387 NA NA t4081.T001912 Solyc06g066320 5 FRUIT_QUALITY GWAS_QTCAT 126 cultivated tomato accessions accession ch6_76 NA 6 37991755 0 0 0 0.00038831592330 10.3390/genes11111387 NA NA t4081.T001913 Solyc06g066320 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch6_76 NA 6 37991755 0 0 0 0.00521334764199 10.3390/genes11111387 NA NA t4081.T001914 Solyc06g066320 4 INFLORESCENCE GWAS_QTCAT 126 cultivated tomato accessions accession ch6_76 NA 6 37991755 0 0 0 0.00465032533062 10.3390/genes11111387 NA NA t4081.T001915 Solyc06g066320 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch6_76 NA 6 37991755 0 0 0 0.00474277828557 10.3390/genes11111387 NA NA t4081.T001916 Solyc06g066320 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch6_76 NA 6 37991755 0 0 0 0.01369242763036 10.3390/genes11111387 NA NA t4081.T001917 Solyc06g066320 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch6_76 NA 6 37991755 0 0 0 0.01900394866901 10.3390/genes11111387 NA NA t4081.T001918 Solyc06g066320 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch6_76 NA 6 37991755 0 0 0 1.08809542228046 10.3390/genes11111387 NA NA t4081.T001919 Solyc06g066320 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch6_76 NA 6 37991755 0 0 0 3.34046155035695 10.3390/genes11111387 NA NA t4081.T001920 Solyc06g066320 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch6_76 NA 6 37991755 0 0 0 7.68231078090749 10.3390/genes11111387 NA NA t4081.T001921 Solyc06g072110 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch6_85 NA 6 40835909 0 0 0 0.01810243202783 10.3390/genes11111387 NA NA t4081.T001922 Solyc06g072110 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch6_85 NA 6 40835909 0 0 0 0.00393993497912 10.3390/genes11111387 NA NA t4081.T001923 Solyc06g072110 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch6_85 NA 6 40835909 0 0 0 0.02272644023695 10.3390/genes11111387 NA NA t4081.T001924 Solyc06g072110 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch6_85 NA 6 40835909 0 0 0 0.00078120782417 10.3390/genes11111387 NA NA t4081.T001925 Solyc06g072110 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch6_85 NA 6 40835909 0 0 0 0.04100760521764 10.3390/genes11111387 NA NA t4081.T001926 Solyc06g072110 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch6_85 NA 6 40835909 0 0 0 2.11866146365862 10.3390/genes11111387 NA NA t4081.T001927 Solyc06g072110 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch6_85 NA 6 40835909 0 0 0 1.2770067460104e 10.3390/genes11111387 NA NA t4081.T001928 Solyc06g072110 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch6_85 NA 6 40835909 0 0 0 5.78751147757365 10.3390/genes11111387 NA NA t4081.T001929 Solyc06g076280 5 FRUIT_SHAPE_DP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch6_106 NA 6 43790258 0 0 0 4.023951657069e- 10.3390/genes11111387 NA NA t4081.T001930 Solyc06g076280 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch6_106 NA 6 43790258 0 0 0 1.21731266845861 10.3390/genes11111387 NA NA t4081.T001931 Solyc06g082620 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch6_126 NA 6 44671264 0 0 0 1.00606695017047 10.3390/genes11111387 NA NA t4081.T001932 Solyc06g082710 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch6_131 NA 6 44723147 0 0 0 2.6497398675554e 10.3390/genes11111387 NA NA t4081.T001933 Solyc06g083150 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch6_135 NA 6 44981982 0 0 0 5.09405044522492 10.3390/genes11111387 NA NA t4081.T001934 Solyc07g007040 4 LEAF_TRAIT GWAS_FarmCPU 126 cultivated tomato accessions accession ch7_6 NA 7 1819971 0 0 0 3.64190509571559 10.3390/genes11111387 NA NA t4081.T001935 Solyc07g007210 4 LEAF_TRAIT GWAS_FarmCPU 126 cultivated tomato accessions accession ch7_9 NA 7 1954297 0 0 0 1.63363342704391 10.3390/genes11111387 NA NA t4081.T001936 Solyc07g043320 4 LEAF_TRAIT GWAS_FarmCPU 126 cultivated tomato accessions accession ch7_40 NA 7 54343493 0 0 0 1.86198487572952 10.3390/genes11111387 NA NA t4081.T001937 Solyc07g055660 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch7_104 NA 7 60945657 0 0 0 1.08631314887187 10.3390/genes11111387 NA NA t4081.T001938 Solyc07g055660 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch7_105 NA 7 60945806 0 0 0 1.42577492621406 10.3390/genes11111387 NA NA t4081.T001939 Solyc07g055920 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch7_115 NA 7 61602523 0 0 0 1.31830039006973 10.3390/genes11111387 NA NA t4081.T001940 Solyc07g056420 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch7_115 NA 7 61602523 0 0 0 1.17154087689878 10.3390/genes11111387 NA NA t4081.T001941 Solyc07g066320 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch7_139 NA 7 65011446 0 0 0 2.48035411829582 10.3390/genes11111387 NA NA t4081.T001942 Solyc08g006650 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch8_8 NA 8 1236750 0 0 0 0.00876548734732 10.3390/genes11111387 NA NA t4081.T001943 Solyc08g006770 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch8_9 NA 8 1336649 0 0 0 0.00876548734732 10.3390/genes11111387 NA NA t4081.T001944 Solyc08g006770 5 FRUIT_SHAPE_DP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch8_9 NA 8 1336649 0 0 0 4.43436834933224 10.3390/genes11111387 NA NA t4081.T001945 Solyc08g006770 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch8_9 NA 8 1336649 0 0 0 8.91389548895249 10.3390/genes11111387 NA NA t4081.T001946 Solyc08g007110 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch8_10 NA 8 1681669 0 0 0 0.02625064688336 10.3390/genes11111387 NA NA t4081.T001947 Solyc08g007110 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch8_10 NA 8 1681669 0 0 0 0.02794822481972 10.3390/genes11111387 NA NA t4081.T001948 Solyc08g007110 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch8_10 NA 8 1681669 0 0 0 0.00058952206913 10.3390/genes11111387 NA NA t4081.T001949 Solyc08g007110 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch8_11 NA 8 1682267 0 0 0 3.26499421700177 10.3390/genes11111387 NA NA t4081.T001950 Solyc08g007140 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch8_12 NA 8 1707622 0 0 0 0.02625064688336 10.3390/genes11111387 NA NA t4081.T001951 Solyc08g007140 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch8_12 NA 8 1707622 0 0 0 0.00058952206913 10.3390/genes11111387 NA NA t4081.T001952 Solyc08g007140 5 FRUIT_SHAPE_CP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch8_12 NA 8 1707622 0 0 0 8.16873406586782 10.3390/genes11111387 NA NA t4081.T001953 Solyc08g007140 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch8_12 NA 8 1707622 0 0 0 5.8174685071006e 10.3390/genes11111387 NA NA t4081.T001954 Solyc08g007140 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch8_12 NA 8 1707622 0 0 0 1.77787293290784 10.3390/genes11111387 NA NA t4081.T001955 Solyc08g007910 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch8_15 NA 8 2420952 0 0 0 8.93357536219383 10.3390/genes11111387 NA NA t4081.T001956 Solyc08g014120 4 LEAF_TRAIT GWAS_FarmCPU 126 cultivated tomato accessions accession ch8_22 NA 8 3682156 0 0 0 2.58933442825638 10.3390/genes11111387 NA NA t4081.T001957 Solyc08g066240 5 FRUIT_SHAPE_DP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch8_42 NA 8 51933622 0 0 0 8.04378879680234 10.3390/genes11111387 NA NA t4081.T001958 Solyc08g066240 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch8_42 NA 8 51933622 0 0 0 2.38542570489525 10.3390/genes11111387 NA NA t4081.T001959 Solyc08g066250 5 FRUIT_SHAPE_DP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch8_46 NA 8 51957751 0 0 0 8.04378879680234 10.3390/genes11111387 NA NA t4081.T001960 Solyc08g066680 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch8_47 NA 8 52714554 0 0 0 1.73900888369492 10.3390/genes11111387 NA NA t4081.T001961 Solyc08g066690 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch8_48 NA 8 52725167 0 0 0 1.73900888373443 10.3390/genes11111387 NA NA t4081.T001962 Solyc08g067790 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch8_51 NA 8 54033423 0 0 0 3.82464938460053 10.3390/genes11111387 NA NA t4081.T001963 Solyc08g076930 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch8_63 NA 8 58038102 0 0 0 8.14532912963047 10.3390/genes11111387 NA NA t4081.T001964 Solyc08g076960 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch8_64 NA 8 58075476 0 0 0 0.00406339403553 10.3390/genes11111387 NA NA t4081.T001965 Solyc08g076960 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch8_64 NA 8 58075476 0 0 0 0.00017897029530 10.3390/genes11111387 NA NA t4081.T001966 Solyc08g076960 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch8_64 NA 8 58075476 0 0 0 0.02975610076433 10.3390/genes11111387 NA NA t4081.T001967 Solyc08g076960 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch8_64 NA 8 58075476 0 0 0 9.96532500725983 10.3390/genes11111387 NA NA t4081.T001968 Solyc08g077120 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch8_65 NA 8 58211860 0 0 0 3.78172512958741 10.3390/genes11111387 NA NA t4081.T001969 Solyc08g077120 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch8_65 NA 8 58211860 0 0 0 6.76348780501663 10.3390/genes11111387 NA NA t4081.T001970 Solyc08g077230 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch8_67 NA 8 58310042 0 0 0 1.05966245479197 10.3390/genes11111387 NA NA t4081.T001971 Solyc08g077430 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch8_68 NA 8 58489239 0 0 0 5.49074317326771 10.3390/genes11111387 NA NA t4081.T001972 Solyc08g077510 6 CLIMATE GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch8_72 NA 8 58669785 0 0 0 7.72159344660509 10.3390/genes11111387 NA NA t4081.T001973 Solyc08g077510 6 CLIMATE GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch8_72 NA 8 58669785 0 0 0 1.61374676114909 10.3390/genes11111387 NA NA t4081.T001974 Solyc08g077730 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch8_74 NA 8 58789060 0 0 0 3.90103409478629 10.3390/genes11111387 NA NA t4081.T001975 Solyc09g008290 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch9_43 NA 9 1751578 0 0 0 0.02650679709249 10.3390/genes11111387 NA NA t4081.T001976 Solyc09g008290 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch9_44 NA 9 1751668 0 0 0 0.02650679709249 10.3390/genes11111387 NA NA t4081.T001977 Solyc09g008470 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch9_46 NA 9 1920842 0 0 0 0.03650429921449 10.3390/genes11111387 NA NA t4081.T001978 Solyc09g008470 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch9_46 NA 9 1920842 0 0 0 5.85484956749944 10.3390/genes11111387 NA NA t4081.T001979 Solyc09g008470 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch9_47 NA 9 1921149 0 0 0 0.03650429921449 10.3390/genes11111387 NA NA t4081.T001980 Solyc09g008730 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch9_50 NA 9 2160991 0 0 0 5.69754631554477 10.3390/genes11111387 NA NA t4081.T001981 Solyc09g008970 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch9_52 NA 9 2346497 0 0 0 3.96147796735879 10.3390/genes11111387 NA NA t4081.T001982 Solyc09g019970 5 FRUIT_QUALITY GWAS_QTCAT 126 cultivated tomato accessions accession ch9_81 NA 9 17881465 0 0 0 1.10569385698539 10.3390/genes11111387 NA NA t4081.T001983 Solyc09g019970 5 FRUIT_QUALITY GWAS_QTCAT 126 cultivated tomato accessions accession ch9_81 NA 9 17881465 0 0 0 7.0603010520206e 10.3390/genes11111387 NA NA t4081.T001984 Solyc09g019970 5 FRUIT_QUALITY GWAS_FarmCPU 126 cultivated tomato accessions accession ch9_81 NA 9 17881465 0 0 0 1.22736458267592 10.3390/genes11111387 NA NA t4081.T001985 Solyc09g066150 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch9_122 NA 9 60175924 0 0 0 2.83762356619224 10.3390/genes11111387 NA NA t4081.T001986 Solyc09g075510 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch9_126 NA 9 62719073 0 0 0 1.38805251830407 10.3390/genes11111387 NA NA t4081.T001987 Solyc09g075830 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession Ch9_128 NA 9 62964303 0 0 0 1.05902353974584 10.3390/genes11111387 NA NA t4081.T001988 Solyc09g075830 4 PHENOLOGY GWAS_FarmCPU 126 cultivated tomato accessions accession ch9_130 NA 9 62965703 0 0 0 1.13184419508859 10.3390/genes11111387 NA NA t4081.T001989 Solyc09g082730 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch9_134 NA 9 63822147 0 0 0 0.02156871509031 10.3390/genes11111387 NA NA t4081.T001990 Solyc09g098510 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch9_160 NA 9 67576986 0 0 0 1.92220812848603 10.3390/genes11111387 NA NA t4081.T001991 Solyc10g005490 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch10_2 NA 10 386899 0 0 0 0.00879287839386 10.3390/genes11111387 NA NA t4081.T001992 Solyc10g007180 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch10_12 NA 10 1624195 0 0 0 0.02615315931077 10.3390/genes11111387 NA NA t4081.T001993 Solyc10g007180 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch10_12 NA 10 1624195 0 0 0 1.63426138630752 10.3390/genes11111387 NA NA t4081.T001994 Solyc10g007180 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch10_12 NA 10 1624195 0 0 0 0.00413993944000 10.3390/genes11111387 NA NA t4081.T001995 Solyc10g007180 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch10_12 NA 10 1624195 0 0 0 0.00231018428945 10.3390/genes11111387 NA NA t4081.T001996 Solyc10g007180 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch10_12 NA 10 1624195 0 0 0 1.80880888822322 10.3390/genes11111387 NA NA t4081.T001997 Solyc10g007180 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_12 NA 10 1624195 0 0 0 6.04816996587112 10.3390/genes11111387 NA NA t4081.T001998 Solyc10g007180 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_12 NA 10 1624195 0 0 0 2.27082828824122 10.3390/genes11111387 NA NA t4081.T001999 Solyc10g007260 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch10_13 NA 10 1673614 0 0 0 0.02615315931077 10.3390/genes11111387 NA NA t4081.T002000 Solyc10g007260 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch10_13 NA 10 1673614 0 0 0 0.00413993944000 10.3390/genes11111387 NA NA t4081.T002001 Solyc10g009200 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_16 NA 10 3199324 0 0 0 6.32711933081527 10.3390/genes11111387 NA NA t4081.T002002 Solyc10g017530 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_20 NA 10 5417269 0 0 0 3.85560100279203 10.3390/genes11111387 NA NA t4081.T002003 Solyc10g024430 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_25 NA 10 14032108 0 0 0 1.33126422587096 10.3390/genes11111387 NA NA t4081.T002004 Solyc10g047670 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_37 NA 10 37074855 0 0 0 9.83335392595439 10.3390/genes11111387 NA NA t4081.T002005 Solyc10g049470 4 INFLORESCENCE GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_39 NA 10 41380475 0 0 0 6.99390888697649 10.3390/genes11111387 NA NA t4081.T002006 Solyc10g055760 5 FRUIT_QUALITY GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_42 NA 10 52872083 0 0 0 4.41518447443117 10.3390/genes11111387 NA NA t4081.T002007 Solyc10g080260 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_52 NA 10 60919212 0 0 0 1.2082071012903e 10.3390/genes11111387 NA NA t4081.T002008 Solyc10g081180 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_58 NA 10 61635593 0 0 0 6.146619456273e- 10.3390/genes11111387 NA NA t4081.T002009 Solyc10g081300 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch10_68 NA 10 61732142 0 0 0 0.02625064688336 10.3390/genes11111387 NA NA t4081.T002010 Solyc10g081300 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch10_68 NA 10 61732142 0 0 0 0.01618974117216 10.3390/genes11111387 NA NA t4081.T002011 Solyc10g081300 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch10_68 NA 10 61732142 0 0 0 0.00058952206913 10.3390/genes11111387 NA NA t4081.T002012 Solyc10g081480 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch10_71 NA 10 61859634 0 0 0 0.00501117533688 10.3390/genes11111387 NA NA t4081.T002013 Solyc10g081480 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch10_71 NA 10 61859634 0 0 0 0.01546425390745 10.3390/genes11111387 NA NA t4081.T002014 Solyc10g081480 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_71 NA 10 61859634 0 0 0 7.43821739001985 10.3390/genes11111387 NA NA t4081.T002015 Solyc10g083110 4 LEAF_TRAIT GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_73 NA 10 62307166 0 0 0 4.06864521696153 10.3390/genes11111387 NA NA t4081.T002016 Solyc10g083780 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_82 NA 10 62863955 0 0 0 9.63046272531115 10.3390/genes11111387 NA NA t4081.T002017 Solyc10g083780 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_82 NA 10 62863955 0 0 0 5.37681025691715 10.3390/genes11111387 NA NA t4081.T002018 Solyc10g083780 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_82 NA 10 62863955 0 0 0 6.35071674614079 10.3390/genes11111387 NA NA t4081.T002019 Solyc10g083780 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_82 NA 10 62863955 0 0 0 2.23324862501648 10.3390/genes11111387 NA NA t4081.T002020 Solyc10g084050 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_83 NA 10 63053314 0 0 0 3.60421648708594 10.3390/genes11111387 NA NA t4081.T002021 Solyc10g084400 4 INFLORESCENCE GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_87 NA 10 63282573 0 0 0 4.78055406810797 10.3390/genes11111387 NA NA t4081.T002022 Solyc10g084400 4 PLANT_GROWTH GWAS_FarmCPU 126 cultivated tomato accessions accession ch10_87 NA 10 63282573 0 0 0 1.10369457372866 10.3390/genes11111387 NA NA t4081.T002023 Solyc11g005010 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_1 NA 11 17800 0 0 0 2.52321689905309 10.3390/genes11111387 NA NA t4081.T002024 Solyc11g005640 4 LEAF_TRAIT GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_5 NA 11 486721 0 0 0 7.7561890882276e 10.3390/genes11111387 NA NA t4081.T002025 Solyc11g005670 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_8 NA 11 497837 0 0 0 6.70974519930224 10.3390/genes11111387 NA NA t4081.T002026 Solyc11g010450 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_17 NA 11 3505905 0 0 0 7.21464113502475 10.3390/genes11111387 NA NA t4081.T002027 Solyc11g010450 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_17 NA 11 3505905 0 0 0 1.15299328612067 10.3390/genes11111387 NA NA t4081.T002028 Solyc11g010490 4 INFLORESCENCE GWAS_QTCAT 126 cultivated tomato accessions accession ch11_20 NA 11 3559216 0 0 0 0.00170596721245 10.3390/genes11111387 NA NA t4081.T002029 Solyc11g010490 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_20 NA 11 3559216 0 0 0 0.00454950605821 10.3390/genes11111387 NA NA t4081.T002030 Solyc11g010490 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_20 NA 11 3559216 0 0 0 0.00377237969699 10.3390/genes11111387 NA NA t4081.T002031 Solyc11g010490 4 INFLORESCENCE GWAS_QTCAT 126 cultivated tomato accessions accession ch11_21 NA 11 3559223 0 0 0 0.00170596721245 10.3390/genes11111387 NA NA t4081.T002032 Solyc11g010490 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_21 NA 11 3559223 0 0 0 0.00454950605821 10.3390/genes11111387 NA NA t4081.T002033 Solyc11g010490 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_21 NA 11 3559223 0 0 0 0.00377237969699 10.3390/genes11111387 NA NA t4081.T002034 Solyc11g011140 4 INFLORESCENCE GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_43 NA 11 4216804 0 0 0 1.35385753122133 10.3390/genes11111387 NA NA t4081.T002035 Solyc11g011260 4 PLANT_GROWTH GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_49 NA 11 4304417 0 0 0 4.27873074282273 10.3390/genes11111387 NA NA t4081.T002036 Solyc11g013160 5 FRUIT_QUALITY GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_92 NA 11 6020939 0 0 0 7.01502904614515 10.3390/genes11111387 NA NA t4081.T002037 Solyc11g013400 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_94 NA 11 6415159 0 0 0 4.12360107757128 10.3390/genes11111387 NA NA t4081.T002038 Solyc11g017070 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_105 NA 11 7859380 0 0 0 4.33538515760028 10.3390/genes11111387 NA NA t4081.T002039 Solyc11g017070 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_105 NA 11 7859380 0 0 0 4.39798612386114 10.3390/genes11111387 NA NA t4081.T002040 Solyc11g017070 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_105 NA 11 7859380 0 0 0 1.96321149978231 10.3390/genes11111387 NA NA t4081.T002041 Solyc11g017070 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_105 NA 11 7859380 0 0 0 9.96820490378419 10.3390/genes11111387 NA NA t4081.T002042 Solyc11g017070 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_105 NA 11 7859380 0 0 0 6.82290344619982 10.3390/genes11111387 NA NA t4081.T002043 Solyc11g017070 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_105 NA 11 7859380 0 0 0 2.74973010466398 10.3390/genes11111387 NA NA t4081.T002044 Solyc11g017070 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_105 NA 11 7859380 0 0 0 4.16695237629729 10.3390/genes11111387 NA NA t4081.T002045 Solyc11g017070 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_105 NA 11 7859380 0 0 0 0.00384801158876 10.3390/genes11111387 NA NA t4081.T002046 Solyc11g017070 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_105 NA 11 7859380 0 0 0 1.49065366459831 10.3390/genes11111387 NA NA t4081.T002047 Solyc11g017070 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_105 NA 11 7859380 0 0 0 8.49888176778756 10.3390/genes11111387 NA NA t4081.T002048 Solyc11g017070 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_105 NA 11 7859380 0 0 0 4.75862678329807 10.3390/genes11111387 NA NA t4081.T002049 Solyc11g017070 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_105 NA 11 7859380 0 0 0 5.61056521674139 10.3390/genes11111387 NA NA t4081.T002050 Solyc11g017070 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_105 NA 11 7859380 0 0 0 2.8820923848599e 10.3390/genes11111387 NA NA t4081.T002051 Solyc11g017070 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_105 NA 11 7859380 0 0 0 1.29760041290732 10.3390/genes11111387 NA NA t4081.T002052 Solyc11g018520 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_111 NA 11 8640004 0 0 0 1.26712560308363 10.3390/genes11111387 NA NA t4081.T002053 Solyc11g020040 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_119 NA 11 10018788 0 0 0 1.74233069379203 10.3390/genes11111387 NA NA t4081.T002054 Solyc11g062240 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_164 NA 11 46229824 0 0 0 1.51265099617583 10.3390/genes11111387 NA NA t4081.T002055 Solyc11g062240 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_164 NA 11 46229824 0 0 0 1.28067784194928 10.3390/genes11111387 NA NA t4081.T002056 Solyc11g064890 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_172 NA 11 47268965 0 0 0 5.62344597010758 10.3390/genes11111387 NA NA t4081.T002057 Solyc11g065180 5 FRUIT_SHAPE_CP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch11_180 NA 11 47595448 0 0 0 4.74807393112988 10.3390/genes11111387 NA NA t4081.T002058 Solyc11g065180 5 FRUIT_SHAPE_CP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch11_181 NA 11 47597367 0 0 0 4.74807393112988 10.3390/genes11111387 NA NA t4081.T002059 Solyc11g066100 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_193 NA 11 48856815 0 0 0 2.91900584159045 10.3390/genes11111387 NA NA t4081.T002060 Solyc11g066100 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_195 NA 11 48858081 0 0 0 5.07943726778641 10.3390/genes11111387 NA NA t4081.T002061 Solyc11g068740 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_210 NA 11 50454327 0 0 0 1.25152586862267 10.3390/genes11111387 NA NA t4081.T002062 Solyc11g068740 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_210 NA 11 50454327 0 0 0 2.8269000436555e 10.3390/genes11111387 NA NA t4081.T002063 Solyc11g068740 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_210 NA 11 50454327 0 0 0 2.80514974856834 10.3390/genes11111387 NA NA t4081.T002064 Solyc11g068740 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_210 NA 11 50454327 0 0 0 2.76824624757688 10.3390/genes11111387 NA NA t4081.T002065 Solyc11g069400 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_216 NA 11 51073674 0 0 0 0.00779482129347 10.3390/genes11111387 NA NA t4081.T002066 Solyc11g069400 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_216 NA 11 51073674 0 0 0 0.00049637038680 10.3390/genes11111387 NA NA t4081.T002067 Solyc11g069400 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_216 NA 11 51073674 0 0 0 0.00143925046703 10.3390/genes11111387 NA NA t4081.T002068 Solyc11g069400 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_216 NA 11 51073674 0 0 0 0.02276583435434 10.3390/genes11111387 NA NA t4081.T002069 Solyc11g069400 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_216 NA 11 51073674 0 0 0 0.00247713883562 10.3390/genes11111387 NA NA t4081.T002070 Solyc11g069400 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_216 NA 11 51073674 0 0 0 1.48998549699221 10.3390/genes11111387 NA NA t4081.T002071 Solyc11g069490 4 INFLORESCENCE GWAS_QTCAT 126 cultivated tomato accessions accession ch11_218 NA 11 51179007 0 0 0 0.02593053518785 10.3390/genes11111387 NA NA t4081.T002072 Solyc11g069490 4 INFLORESCENCE GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_218 NA 11 51179007 0 0 0 2.6321021218966e 10.3390/genes11111387 NA NA t4081.T002073 Solyc11g069700 4 PLANT_GROWTH GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_219 NA 11 51391963 0 0 0 2.2895458928138e 10.3390/genes11111387 NA NA t4081.T002074 Solyc11g069700 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_220 NA 11 51391987 0 0 0 7.57716914271057 10.3390/genes11111387 NA NA t4081.T002075 Solyc11g069700 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_220 NA 11 51391987 0 0 0 6.61124820438257 10.3390/genes11111387 NA NA t4081.T002076 Solyc11g069700 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_221 NA 11 51392020 0 0 0 1.71298988142306 10.3390/genes11111387 NA NA t4081.T002077 Solyc11g071680 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_234 NA 11 52162394 0 0 0 0.0193831007406 10.3390/genes11111387 NA NA t4081.T002078 Solyc11g071680 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_234 NA 11 52162394 0 0 0 0.01283367242851 10.3390/genes11111387 NA NA t4081.T002079 Solyc11g071680 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_234 NA 11 52162394 0 0 0 4.36353840499002 10.3390/genes11111387 NA NA t4081.T002080 Solyc11g071680 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_234 NA 11 52162394 0 0 0 0.04101077924551 10.3390/genes11111387 NA NA t4081.T002081 Solyc11g071680 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_234 NA 11 52162394 0 0 0 0.02947361386817 10.3390/genes11111387 NA NA t4081.T002082 Solyc11g071680 4 INFLORESCENCE GWAS_QTCAT 126 cultivated tomato accessions accession ch11_234 NA 11 52162394 0 0 0 0.04798002538082 10.3390/genes11111387 NA NA t4081.T002083 Solyc11g071680 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_234 NA 11 52162394 0 0 0 0.04696711012835 10.3390/genes11111387 NA NA t4081.T002084 Solyc11g071680 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_234 NA 11 52162394 0 0 0 0.00335440798045 10.3390/genes11111387 NA NA t4081.T002085 Solyc11g071680 5 FRUIT_SIZE_CP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch11_234 NA 11 52162394 0 0 0 1.79044968981363 10.3390/genes11111387 NA NA t4081.T002086 Solyc11g071680 5 FRUIT_SIZE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_234 NA 11 52162394 0 0 0 1.89868774423901 10.3390/genes11111387 NA NA t4081.T002087 Solyc11g071700 4 INFLORESCENCE GWAS_QTCAT 126 cultivated tomato accessions accession ch11_235 NA 11 52196558 0 0 0 0.04798002538082 10.3390/genes11111387 NA NA t4081.T002088 Solyc11g071700 5 FRUIT_SIZE_CP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch11_235 NA 11 52196558 0 0 0 4.15949270868891 10.3390/genes11111387 NA NA t4081.T002089 Solyc11g071700 4 INFLORESCENCE GWAS_QTCAT 126 cultivated tomato accessions accession ch11_236 NA 11 52204046 0 0 0 0.04798002538082 10.3390/genes11111387 NA NA t4081.T002090 Solyc11g071700 5 FRUIT_SIZE_CP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch11_236 NA 11 52204046 0 0 0 4.15952928531798 10.3390/genes11111387 NA NA t4081.T002091 Solyc11g071700 4 INFLORESCENCE GWAS_QTCAT 126 cultivated tomato accessions accession ch11_237 NA 11 52204089 0 0 0 0.04798002538082 10.3390/genes11111387 NA NA t4081.T002092 Solyc11g071710 5 FRUIT_QUALITY GWAS_QTCAT 126 cultivated tomato accessions accession ch11_238 NA 11 52205021 0 0 0 1.84268110754112 10.3390/genes11111387 NA NA t4081.T002093 Solyc11g071710 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_238 NA 11 52205021 0 0 0 2.87596303626795 10.3390/genes11111387 NA NA t4081.T002094 Solyc11g071710 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_238 NA 11 52205021 0 0 0 7.40962946903277 10.3390/genes11111387 NA NA t4081.T002095 Solyc11g071710 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_238 NA 11 52205021 0 0 0 0.01283367242851 10.3390/genes11111387 NA NA t4081.T002096 Solyc11g071710 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_238 NA 11 52205021 0 0 0 4.36353840499002 10.3390/genes11111387 NA NA t4081.T002097 Solyc11g071710 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_238 NA 11 52205021 0 0 0 0.04101077924551 10.3390/genes11111387 NA NA t4081.T002098 Solyc11g071710 4 INFLORESCENCE GWAS_QTCAT 126 cultivated tomato accessions accession ch11_238 NA 11 52205021 0 0 0 0.04798002538082 10.3390/genes11111387 NA NA t4081.T002099 Solyc11g071710 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_238 NA 11 52205021 0 0 0 0.04696711012835 10.3390/genes11111387 NA NA t4081.T002100 Solyc11g071710 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_238 NA 11 52205021 0 0 0 0.00474366138006 10.3390/genes11111387 NA NA t4081.T002101 Solyc11g071710 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_238 NA 11 52205021 0 0 0 0.00797441720990 10.3390/genes11111387 NA NA t4081.T002102 Solyc11g071710 5 FRUIT_SIZE_CP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch11_238 NA 11 52205021 0 0 0 5.55314166490992 10.3390/genes11111387 NA NA t4081.T002103 Solyc11g071710 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_238 NA 11 52205021 0 0 0 2.47948840881448 10.3390/genes11111387 NA NA t4081.T002104 Solyc11g071710 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_238 NA 11 52205021 0 0 0 8.87806823540303 10.3390/genes11111387 NA NA t4081.T002105 Solyc11g071710 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_238 NA 11 52205021 0 0 0 2.0297061659463e 10.3390/genes11111387 NA NA t4081.T002106 Solyc11g071710 5 FRUIT_SHAPE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_238 NA 11 52205021 0 0 0 6.66736644551623 10.3390/genes11111387 NA NA t4081.T002107 Solyc11g071920 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 0.00806725049556 10.3390/genes11111387 NA NA t4081.T002108 Solyc11g071920 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 0.00405332680519 10.3390/genes11111387 NA NA t4081.T002109 Solyc11g071920 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 0.00495187143276 10.3390/genes11111387 NA NA t4081.T002110 Solyc11g071920 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 3.58800002969703 10.3390/genes11111387 NA NA t4081.T002111 Solyc11g071920 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 1.0642222774897e 10.3390/genes11111387 NA NA t4081.T002112 Solyc11g071920 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 0.00015517528577 10.3390/genes11111387 NA NA t4081.T002113 Solyc11g071920 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 0.01517176143470 10.3390/genes11111387 NA NA t4081.T002114 Solyc11g071920 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 0.00492488683019 10.3390/genes11111387 NA NA t4081.T002115 Solyc11g071920 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 0.00848726836729 10.3390/genes11111387 NA NA t4081.T002116 Solyc11g071920 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 2.19739781407809 10.3390/genes11111387 NA NA t4081.T002117 Solyc11g071920 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 0.00088111846080 10.3390/genes11111387 NA NA t4081.T002118 Solyc11g071920 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 0.00032497449152 10.3390/genes11111387 NA NA t4081.T002119 Solyc11g071920 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 0.00140130467665 10.3390/genes11111387 NA NA t4081.T002120 Solyc11g071920 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 0.00105759942647 10.3390/genes11111387 NA NA t4081.T002121 Solyc11g071920 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 4.6467268524035e 10.3390/genes11111387 NA NA t4081.T002122 Solyc11g071920 5 FRUIT_SIZE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 0.00447406589335 10.3390/genes11111387 NA NA t4081.T002123 Solyc11g071920 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 6.04093321447105 10.3390/genes11111387 NA NA t4081.T002124 Solyc11g071920 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 1.10897536124012 10.3390/genes11111387 NA NA t4081.T002125 Solyc11g071920 4 INFLORESCENCE GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 1.14834667819874 10.3390/genes11111387 NA NA t4081.T002126 Solyc11g071920 5 FRUIT_SIZE_CP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 3.60482099030776 10.3390/genes11111387 NA NA t4081.T002127 Solyc11g071920 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_239 NA 11 52333752 0 0 0 1.76160358004042 10.3390/genes11111387 NA NA t4081.T002128 Solyc11g072810 5 FRUIT_SHAPE_CP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch11_247 NA 11 53090127 0 0 0 1.29159566119121 10.3390/genes11111387 NA NA t4081.T002129 Solyc11g072810 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_247 NA 11 53090127 0 0 0 5.77330650430712 10.3390/genes11111387 NA NA t4081.T002130 Solyc11g072810 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch11_247 NA 11 53090127 0 0 0 1.984906362505e- 10.3390/genes11111387 NA NA t4081.T002131 Solyc11g072810 5 FRUIT_SHAPE_CP GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch11_248 NA 11 53093203 0 0 0 1.29159566119121 10.3390/genes11111387 NA NA t4081.T002132 Solyc12g005180 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch12_1 NA 12 124344 0 0 0 7.15075667299878 10.3390/genes11111387 NA NA t4081.T002133 Solyc12g006010 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch12_12 NA 12 621594 0 0 0 0.00374146069840 10.3390/genes11111387 NA NA t4081.T002134 Solyc12g006490 6 CLIMATE GWAS_GAPIT.MLM 126 cultivated tomato accessions accession ch12_36 NA 12 1001602 0 0 0 7.27611743628657 10.3390/genes11111387 NA NA t4081.T002135 Solyc12g017230 5 FRUIT_SHAPE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch12_122 NA 12 6423281 0 0 0 0.03840603476007 10.3390/genes11111387 NA NA t4081.T002136 Solyc12g017230 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch12_123 NA 12 6423486 0 0 0 6.20239513491802 10.3390/genes11111387 NA NA t4081.T002137 Solyc12g049270 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch12_154 NA 12 46210853 0 0 0 3.75780844094926 10.3390/genes11111387 NA NA t4081.T002138 Solyc12g056240 5 FRUIT_SHAPE_DP GWAS_QTCAT 126 cultivated tomato accessions accession ch12_159 NA 12 47565808 0 0 0 0.00510350439419 10.3390/genes11111387 NA NA t4081.T002139 Solyc12g056240 5 FRUIT_SHAPE_DP GWAS_FarmCPU 126 cultivated tomato accessions accession ch12_159 NA 12 47565808 0 0 0 1.01151323000853 10.3390/genes11111387 NA NA t4081.T002140 Solyc12g094620 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch12_175 NA 12 63143568 0 0 0 0.02483997414966 10.3390/genes11111387 NA NA t4081.T002141 Solyc12g096130 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch12_179 NA 12 63519831 0 0 0 1.47601373865563 10.3390/genes11111387 NA NA t4081.T002142 Solyc12g096130 6 CLIMATE GWAS_FarmCPU 126 cultivated tomato accessions accession ch12_179 NA 12 63519831 0 0 0 1.99277806279953 10.3390/genes11111387 NA NA t4081.T002143 Solyc12g096130 4 INFLORESCENCE GWAS_FarmCPU 126 cultivated tomato accessions accession ch12_179 NA 12 63519831 0 0 0 4.45794394752366 10.3390/genes11111387 NA NA t4081.T002144 Solyc12g096560 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch12_180 NA 12 63761045 0 0 0 0.00442643882022 10.3390/genes11111387 NA NA t4081.T002145 Solyc12g096560 5 FRUIT_SIZE_CP GWAS_QTCAT 126 cultivated tomato accessions accession ch12_180 NA 12 63761045 0 0 0 0.02483997414966 10.3390/genes11111387 NA NA t4081.T002146 metabolite_QTL_on_IL12-3 5 seed-specific flavonoid QTL mapping 76 ILs and their recurrent parent M82 introgression lines (ILs) and their recurrent parent C201757 NA 0 0 S422-1 0 0 ≦0.01 10.1111/tpj.14879 NA NA t4081.T002147 metabolite_QTL_on_IL12-4 5 seed-specific flavonoid QTL mapping 76 ILs and their recurrent parent M82 introgression lines (ILs) and their recurrent parent C201757 NA 0 0 S422-1 0 0 ≦0.01 10.1111/tpj.14879 NA NA t4081.T002148 metabolite_QTL_on_IL12-3 5 seed-specific flavonoid QTL mapping 76 ILs and their recurrent parent M82 introgression lines (ILs) and their recurrent parent C201757 NA 0 0 S422-1 0 0 ≦0.01 10.1111/tpj.14879 NA NA t4081.T002149 metabolite_QTL_on_IL12-4 5 seed-specific flavonoid QTL mapping 76 ILs and their recurrent parent M82 introgression lines (ILs) and their recurrent parent C201757 NA 0 0 S422-1 0 0 ≦0.01 10.1111/tpj.14879 NA NA t4081.T002150 metabolite_QTL_on_IL12-3 5 seed-specific flavonoid QTL mapping 76 ILs and their recurrent parent M82 introgression lines (ILs) and their recurrent parent C201757 NA 0 0 S422-1 0 0 ≦0.01 10.1111/tpj.14879 NA NA t4081.T002151 metabolite_QTL_on_IL12-4 5 seed-specific flavonoid QTL mapping 76 ILs and their recurrent parent M82 introgression lines (ILs) and their recurrent parent C201757 NA 0 0 S422-1 0 0 ≦0.01 10.1111/tpj.14879 NA NA t4081.T002152 metabolite_QTL_on_IL7-4 5 seed-specific glycoalkaloid QTL mapping 76 ILs and their recurrent parent M82 introgression lines (ILs) and their recurrent parent NA 0 0 0 0 ≦0.01 10.1111/tpj.14879 NA NA t4081.T002153 metabolite_QTL_on_IL7-4-1 5 seed-specific glycoalkaloid QTL mapping 76 ILs and their recurrent parent M82 introgression lines (ILs) and their recurrent parent NA 0 0 0 0 ≦0.01 10.1111/tpj.14879 NA NA t4081.T002154 metabolite_QTL_on_IL7-4 5 seed-specific glycoalkaloid QTL mapping 76 ILs and their recurrent parent M82 introgression lines (ILs) and their recurrent parent NA 0 0 0 0 ≦0.01 10.1111/tpj.14879 NA NA t4081.T002155 metabolite_QTL_on_IL7-4-1 5 seed-specific glycoalkaloid QTL mapping 76 ILs and their recurrent parent M82 introgression lines (ILs) and their recurrent parent NA 0 0 0 0 ≦0.01 10.1111/tpj.14879 NA NA t4081.T002156 QTL_for_Gmax_Water 4 Gmax_Water QTL mapping RIL population recombinant inbred line 46518057 NA 0 0 0 0 81.05 3.1 10.1111/pce.13788 NA NA t4081.T002157 QTL_for_Gmax_Water 4 Gmax_Water QTL mapping RIL population recombinant inbred line 65062496 NA 0 0 0 0 94.46 3.15 10.1111/pce.13788 NA NA t4081.T002158 QTL_for_Gmax_Water 4 Gmax_Water QTL mapping RIL population recombinant inbred line 63534969 NA 0 0 0 0 101.68 7.56 10.1111/pce.13788 NA NA t4081.T002159 QTL_for_Gmax_Water 4 Gmax_Water QTL mapping RIL population recombinant inbred line 2766957 NA 0 0 0 0 33.78 6.25 10.1111/pce.13788 NA NA t4081.T002160 QTL_for_Gmax_Water 4 Gmax_Water QTL mapping RIL population recombinant inbred line 38733705 NA 0 0 0 0 47.71 3.48 10.1111/pce.13788 NA NA t4081.T002161 QTL_for_Gmax_Water 4 Gmax_Water QTL mapping RIL population recombinant inbred line 61735 NA 0 0 0 0 0 4.43 10.1111/pce.13788 NA NA t4081.T002162 QTL_for_Gmax_Water 4 Gmax_Water QTL mapping RIL population recombinant inbred line 3143736 NA 0 0 0 0 32.61 3.85 10.1111/pce.13788 NA NA t4081.T002163 QTL_for_Gmax_Water 4 Gmax_Water QTL mapping RIL population recombinant inbred line 3184840 NA 0 0 0 0 36.05 5.86 10.1111/pce.13788 NA NA t4081.T002164 QTL_for_Gmax_Water 4 Gmax_Water QTL mapping RIL population recombinant inbred line 3471392 NA 0 0 0 0 35.3 6.68 10.1111/pce.13788 NA NA t4081.T002165 QTL_for_Gmax_NaCl 4 Gmax_NaCl QTL mapping RIL population recombinant inbred line 2732300 NA 0 0 0 0 32.02 3.12 10.1111/pce.13788 NA NA t4081.T002166 QTL_for_Gmax_NaCl 4 Gmax_NaCl QTL mapping RIL population recombinant inbred line 55015520 NA 0 0 0 0 68.63 3 10.1111/pce.13788 NA NA t4081.T002167 QTL_for_Gmax_Mann 4 Gmax_Mann QTL mapping RIL population recombinant inbred line 3143736 NA 0 0 0 0 32.61 3.67 10.1111/pce.13788 NA NA t4081.T002168 QTL_for_Gmax_Mann 4 Gmax_Mann QTL mapping RIL population recombinant inbred line 2766957 NA 0 0 0 0 33.78 6.07 10.1111/pce.13788 NA NA t4081.T002169 QTL_for_Gmax_Mann 4 Gmax_Mann QTL mapping RIL population recombinant inbred line 58175893 NA 0 0 0 0 89.47 3.65 10.1111/pce.13788 NA NA t4081.T002170 QTL_for_Gmax_HT 4 Gmax_HT QTL mapping RIL population recombinant inbred line 3143736 NA 0 0 0 0 32.61 4.52 10.1111/pce.13788 NA NA t4081.T002171 QTL_for_Gmax_HT 4 Gmax_HT QTL mapping RIL population recombinant inbred line 47411518 NA 0 0 0 0 21.9 4.11 10.1111/pce.13788 NA NA t4081.T002172 QTL_for_t10-1_Water 4 t10-1_Water QTL mapping RIL population recombinant inbred line 3143736 NA 0 0 0 0 32.61 4.28 10.1111/pce.13788 NA NA t4081.T002173 QTL_for_t10-1_Water 4 t10-1_Water QTL mapping RIL population recombinant inbred line 43580814 NA 0 0 0 0 96.3 4.05 10.1111/pce.13788 NA NA t4081.T002174 QTL_for_t10-1_Water 4 t10-1_Water QTL mapping RIL population recombinant inbred line 57382614 NA 0 0 0 0 77.07 3.17 10.1111/pce.13788 NA NA t4081.T002175 QTL_for_t10-1_Water 4 t10-1_Water QTL mapping RIL population recombinant inbred line 48283991 NA 0 0 0 0 26.75 3.98 10.1111/pce.13788 NA NA t4081.T002176 QTL_for_t10-1_Water 4 t10-1_Water QTL mapping RIL population recombinant inbred line 497912 NA 0 0 0 0 1.31 3.15 10.1111/pce.13788 NA NA t4081.T002177 QTL_for_t10-1_NaCl 4 t10-1_NaCl QTL mapping RIL population recombinant inbred line 40402482 NA 0 0 0 0 53.79 3.67 10.1111/pce.13788 NA NA t4081.T002178 QTL_for_t10-1_NaCl 4 t10-1_NaCl QTL mapping RIL population recombinant inbred line 43761285 NA 0 0 0 0 96.82 3.93 10.1111/pce.13788 NA NA t4081.T002179 QTL_for_t10-1_NaCl 4 t10-1_NaCl QTL mapping RIL population recombinant inbred line 3143736 NA 0 0 0 0 32.61 3.35 10.1111/pce.13788 NA NA t4081.T002180 QTL_for_t10-1_NaCl 4 t10-1_NaCl QTL mapping RIL population recombinant inbred line 3317534 NA 0 0 0 0 19.43 3.2 10.1111/pce.13788 NA NA t4081.T002181 QTL_for_t10-1_NaCl 4 t10-1_NaCl QTL mapping RIL population recombinant inbred line 57382614 NA 0 0 0 0 77.07 4.85 10.1111/pce.13788 NA NA t4081.T002182 QTL_for_t10-1_Mann 4 t10-1_Mann QTL mapping RIL population recombinant inbred line 43761285 NA 0 0 0 0 96.82 3.44 10.1111/pce.13788 NA NA t4081.T002183 QTL_for_t10-1_Mann 4 t10-1_Mann QTL mapping RIL population recombinant inbred line 58088185 NA 0 0 0 0 54.14 3.24 10.1111/pce.13788 NA NA t4081.T002184 QTL_for_t10-1_Mann 4 t10-1_Mann QTL mapping RIL population recombinant inbred line 48283991 NA 0 0 0 0 26.75 3.44 10.1111/pce.13788 NA NA t4081.T002185 QTL_for_t10-1_Mann 4 t10-1_Mann QTL mapping RIL population recombinant inbred line 33753248 NA 0 0 0 0 21.92 4.22 10.1111/pce.13788 NA NA t4081.T002186 QTL_for_t10-1_Mann 4 t10-1_Mann QTL mapping RIL population recombinant inbred line 4936160 NA 0 0 0 0 42.57 4.06 10.1111/pce.13788 NA NA t4081.T002187 QTL_for_t10-1_HT 4 t10-1_HT QTL mapping RIL population recombinant inbred line 43580814 NA 0 0 0 0 96.3 3.67 10.1111/pce.13788 NA NA t4081.T002188 QTL_for_t10-1_HT 4 t10-1_HT QTL mapping RIL population recombinant inbred line 3143736 NA 0 0 0 0 32.61 3.06 10.1111/pce.13788 NA NA t4081.T002189 QTL_for_t10-1_HT 4 t10-1_HT QTL mapping RIL population recombinant inbred line 43580814 NA 0 0 0 0 96.3 4.36 10.1111/pce.13788 NA NA t4081.T002190 QTL_for_t50-1_Water 4 t50-1_Water QTL mapping RIL population recombinant inbred line 1149764 NA 0 0 0 0 9.99 3.32 10.1111/pce.13788 NA NA t4081.T002191 QTL_for_t50-1_Water 4 t50-1_Water QTL mapping RIL population recombinant inbred line 3143736 NA 0 0 0 0 32.61 3.99 10.1111/pce.13788 NA NA t4081.T002192 QTL_for_t50-1_Water 4 t50-1_Water QTL mapping RIL population recombinant inbred line 43580814 NA 0 0 0 0 96.3 3.8 10.1111/pce.13788 NA NA t4081.T002193 QTL_for_t50-1_Water 4 t50-1_Water QTL mapping RIL population recombinant inbred line 57382614 NA 0 0 0 0 77.07 3.87 10.1111/pce.13788 NA NA t4081.T002194 QTL_for_t50-1_Water 4 t50-1_Water QTL mapping RIL population recombinant inbred line 48586795 NA 0 0 0 0 27.82 3.99 10.1111/pce.13788 NA NA t4081.T002195 QTL_for_t50-1_Water 4 t50-1_Water QTL mapping RIL population recombinant inbred line 497912 NA 0 0 0 0 1.31 3.42 10.1111/pce.13788 NA NA t4081.T002196 QTL_for_t50-1_NaCl 4 t50-1_NaCl QTL mapping RIL population recombinant inbred line 43761285 NA 0 0 0 0 96.82 3.03 10.1111/pce.13788 NA NA t4081.T002197 QTL_for_t50-1_NaCl 4 t50-1_NaCl QTL mapping RIL population recombinant inbred line 2312299 NA 0 0 0 0 23.33 3.22 10.1111/pce.13788 NA NA t4081.T002198 QTL_for_t50-1_NaCl 4 t50-1_NaCl QTL mapping RIL population recombinant inbred line 40402482 NA 0 0 0 0 53.79 3.54 10.1111/pce.13788 NA NA t4081.T002199 QTL_for_t50-1_NaCl 4 t50-1_NaCl QTL mapping RIL population recombinant inbred line 3317534 NA 0 0 0 0 19.43 3.54 10.1111/pce.13788 NA NA t4081.T002200 QTL_for_t50-1_NaCl 4 t50-1_NaCl QTL mapping RIL population recombinant inbred line 57382614 NA 0 0 0 0 77.07 4.08 10.1111/pce.13788 NA NA t4081.T002201 QTL_for_t50-1_Mann 4 t50-1_Mann QTL mapping RIL population recombinant inbred line 33753248 NA 0 0 0 0 21.92 3.68 10.1111/pce.13788 NA NA t4081.T002202 QTL_for_t50-1_Mann 4 t50-1_Mann QTL mapping RIL population recombinant inbred line 4936160 NA 0 0 0 0 42.57 3.7 10.1111/pce.13788 NA NA t4081.T002203 QTL_for_t50-1_Mann 4 t50-1_Mann QTL mapping RIL population recombinant inbred line 6145947 NA 0 0 0 0 55.28 3.07 10.1111/pce.13788 NA NA t4081.T002204 QTL_for_t50-1_Mann 4 t50-1_Mann QTL mapping RIL population recombinant inbred line 43761285 NA 0 0 0 0 96.82 3.38 10.1111/pce.13788 NA NA t4081.T002205 QTL_for_t50-1_HT 4 t50-1_HT QTL mapping RIL population recombinant inbred line 83444565 NA 0 0 0 0 119.88 3.49 10.1111/pce.13788 NA NA t4081.T002206 QTL_for_t50-1_HT 4 t50-1_HT QTL mapping RIL population recombinant inbred line 43761285 NA 0 0 0 0 96.82 3.05 10.1111/pce.13788 NA NA t4081.T002207 QTL_for_t50-1_HT 4 t50-1_HT QTL mapping RIL population recombinant inbred line 43761285 NA 0 0 0 0 96.82 3.78 10.1111/pce.13788 NA NA t4081.T002208 QTL_for_AUC_Water 4 AUC_Water QTL mapping RIL population recombinant inbred line 63534969 NA 0 0 0 0 101.68 4.11 10.1111/pce.13788 NA NA t4081.T002209 QTL_for_AUC_Water 4 AUC_Water QTL mapping RIL population recombinant inbred line 2766957 NA 0 0 0 0 33.78 4 10.1111/pce.13788 NA NA t4081.T002210 QTL_for_AUC_Water 4 AUC_Water QTL mapping RIL population recombinant inbred line 3143736 NA 0 0 0 0 32.61 5.36 10.1111/pce.13788 NA NA t4081.T002211 QTL_for_AUC_Water 4 AUC_Water QTL mapping RIL population recombinant inbred line 2732300 NA 0 0 0 0 32.02 3.09 10.1111/pce.13788 NA NA t4081.T002212 QTL_for_AUC_Water 4 AUC_Water QTL mapping RIL population recombinant inbred line 57382614 NA 0 0 0 0 77.07 3.63 10.1111/pce.13788 NA NA t4081.T002213 QTL_for_AUC_Water 4 AUC_Water QTL mapping RIL population recombinant inbred line 47411518 NA 0 0 0 0 21.9 3.14 10.1111/pce.13788 NA NA t4081.T002214 QTL_for_AUC_Water 4 AUC_Water QTL mapping RIL population recombinant inbred line 3471392 NA 0 0 0 0 35.3 3.55 10.1111/pce.13788 NA NA t4081.T002215 QTL_for_AUC_NaCl 4 AUC_NaCl QTL mapping RIL population recombinant inbred line 43761285 NA 0 0 0 0 96.82 3.03 10.1111/pce.13788 NA NA t4081.T002216 QTL_for_AUC_NaCl 4 AUC_NaCl QTL mapping RIL population recombinant inbred line 57382614 NA 0 0 0 0 77.07 4.5 10.1111/pce.13788 NA NA t4081.T002217 QTL_for_AUC_Mann 4 AUC_Mann QTL mapping RIL population recombinant inbred line 33753248 NA 0 0 0 0 21.92 3.32 10.1111/pce.13788 NA NA t4081.T002218 QTL_for_AUC_Mann 4 AUC_Mann QTL mapping RIL population recombinant inbred line 3143736 NA 0 0 0 0 32.61 3.52 10.1111/pce.13788 NA NA t4081.T002219 QTL_for_AUC_Mann 4 AUC_Mann QTL mapping RIL population recombinant inbred line 43580814 NA 0 0 0 0 96.3 4.1 10.1111/pce.13788 NA NA t4081.T002220 QTL_for_AUC_HT 4 AUC_HT QTL mapping RIL population recombinant inbred line 47411518 NA 0 0 0 0 21.9 4.23 10.1111/pce.13788 NA NA t4081.T002221 QTL_for_U8416-1_Water 4 U8416-1_Water QTL mapping RIL population recombinant inbred line 84030652 NA 0 0 0 0 122.18 4.95 10.1111/pce.13788 NA NA t4081.T002222 QTL_for_U8416-1_Water 4 U8416-1_Water QTL mapping RIL population recombinant inbred line 1068541 NA 0 0 0 0 9.47 3.31 10.1111/pce.13788 NA NA t4081.T002223 QTL_for_U8416-1_Water 4 U8416-1_Water QTL mapping RIL population recombinant inbred line 3317534 NA 0 0 0 0 19.43 3.9 10.1111/pce.13788 NA NA t4081.T002224 QTL_for_U8416-1_Water 4 U8416-1_Water QTL mapping RIL population recombinant inbred line 57382614 NA 0 0 0 0 77.07 3.13 10.1111/pce.13788 NA NA t4081.T002225 QTL_for_U8416-1_NaCl 4 U8416-1_NaCl QTL mapping RIL population recombinant inbred line 9032698 NA 0 0 0 0 14.91 3.2 10.1111/pce.13788 NA NA t4081.T002226 QTL_for_U8416-1_NaCl 4 U8416-1_NaCl QTL mapping RIL population recombinant inbred line 1068541 NA 0 0 0 0 9.47 6.56 10.1111/pce.13788 NA NA t4081.T002227 QTL_for_U8416-1_NaCl 4 U8416-1_NaCl QTL mapping RIL population recombinant inbred line seq-rs5544 NA 0 0 0 0 54.21 4.03 10.1111/pce.13788 NA NA t4081.T002228 QTL_for_U8416-1_NaCl 4 U8416-1_NaCl QTL mapping RIL population recombinant inbred line 40402482 NA 0 0 0 0 53.79 4.38 10.1111/pce.13788 NA NA t4081.T002229 QTL_for_U8416-1_NaCl 4 U8416-1_NaCl QTL mapping RIL population recombinant inbred line 1068541 NA 0 0 0 0 9.47 3.21 10.1111/pce.13788 NA NA t4081.T002230 QTL_for_U8416-1_NaCl 4 U8416-1_NaCl QTL mapping RIL population recombinant inbred line 2312299 NA 0 0 0 0 23.33 4.59 10.1111/pce.13788 NA NA t4081.T002231 QTL_for_U8416-1_Mann 4 U8416-1_Mann QTL mapping RIL population recombinant inbred line 58231771 NA 0 0 0 0 107.31 5.8 10.1111/pce.13788 NA NA t4081.T002232 QTL_for_U8416-1_Mann 4 U8416-1_Mann QTL mapping RIL population recombinant inbred line 42081887 NA 0 0 0 0 89.11 3.63 10.1111/pce.13788 NA NA t4081.T002233 QTL_for_U8416-1_HT 4 U8416-1_HT QTL mapping RIL population recombinant inbred line 83444565 NA 0 0 0 0 119.88 5.32 10.1111/pce.13788 NA NA t4081.T002234 QTL_for_U8416-1_HT 4 U8416-1_HT QTL mapping RIL population recombinant inbred line 9032698 NA 0 0 0 0 14.91 3.36 10.1111/pce.13788 NA NA t4081.T002235 QTL_for_U8416-1_HT 4 U8416-1_HT QTL mapping RIL population recombinant inbred line seq-rs5544 NA 0 0 0 0 54.21 3.2 10.1111/pce.13788 NA NA t4081.T002236 QTL_for_U8416-1_HT 4 U8416-1_HT QTL mapping RIL population recombinant inbred line 83852566 NA 0 0 0 0 121.04 4.92 10.1111/pce.13788 NA NA t4081.T002237 QTL_for_Th-T 4 Th-T QTL mapping RIL population recombinant inbred line 86171125 NA 0 0 0 0 131.12 4.05 10.1111/pce.13788 NA NA t4081.T002238 QTL_for_Th-T 4 Th-T QTL mapping RIL population recombinant inbred line 33676754 NA 0 0 0 0 42.63 3.53 10.1111/pce.13788 NA NA t4081.T002239 QTL_for_Th-T 4 Th-T QTL mapping RIL population recombinant inbred line 2247148 NA 0 0 0 0 17.78 3.3 10.1111/pce.13788 NA NA t4081.T002240 QTL_for_Th-I 4 Th-I QTL mapping RIL population recombinant inbred line 1896188 NA 0 0 0 0 20.44 3.47 10.1111/pce.13788 NA NA t4081.T002241 QTL_for_Th-I 4 Th-I QTL mapping RIL population recombinant inbred line 84791385 NA 0 0 0 0 123.62 3.9 10.1111/pce.13788 NA NA t4081.T002242 QTL_for_Th-I 4 Th-I QTL mapping RIL population recombinant inbred line 57499166 NA 0 0 0 0 104.14 3.2 10.1111/pce.13788 NA NA t4081.T002243 QTL_for_Th-I 4 Th-I QTL mapping RIL population recombinant inbred line 516524 NA 0 0 0 0 2.67 7.02 10.1111/pce.13788 NA NA t4081.T002244 QTL_for_Th-D 4 Th-D QTL mapping RIL population recombinant inbred line 62307380 NA 0 0 0 0 119.1 3.44 10.1111/pce.13788 NA NA t4081.T002245 QTL_for_Th-D 4 Th-D QTL mapping RIL population recombinant inbred line 59591639 NA 0 0 0 0 92.67 3.96 10.1111/pce.13788 NA NA t4081.T002246 QTL_for_Th-D 4 Th-D QTL mapping RIL population recombinant inbred line 83444565 NA 0 0 0 0 119.88 3.1 10.1111/pce.13788 NA NA t4081.T002247 QTL_for_SS 4 SS QTL mapping RIL population recombinant inbred line 72831305 NA 0 0 0 0 92.75 3.45 10.1111/pce.13788 NA NA t4081.T002248 QTL_for_SS 4 SS QTL mapping RIL population recombinant inbred line 2237667 NA 0 0 0 0 26.45 3.02 10.1111/pce.13788 NA NA t4081.T002249 QTL_for_SS 4 SS QTL mapping RIL population recombinant inbred line 48586795 NA 0 0 0 0 27.82 3.02 10.1111/pce.13788 NA NA t4081.T002250 QTL_for_SW 4 SW QTL mapping RIL population recombinant inbred line 72831305 NA 0 0 0 0 92.75 3.65 10.1111/pce.13788 NA NA t4081.T002251 QTL_for_SW 4 SW QTL mapping RIL population recombinant inbred line 62161978 NA 0 0 0 0 69.81 3.16 10.1111/pce.13788 NA NA t4081.T002252 QTL_for_SW 4 SW QTL mapping RIL population recombinant inbred line 50180826 NA 0 0 0 0 55.25 3.42 10.1111/pce.13788 NA NA t4081.T002253 QTL_for_SW 4 SW QTL mapping RIL population recombinant inbred line 62161978 NA 0 0 0 0 69.81 3.51 10.1111/pce.13788 NA NA t4081.T002254 QTL_for_FWSH 4 FWSH QTL mapping RIL population recombinant inbred line 72831305 NA 0 0 0 0 92.75 5.12 10.1111/pce.13788 NA NA t4081.T002255 QTL_for_FWSH 4 FWSH QTL mapping RIL population recombinant inbred line 69683843 NA 0 0 0 0 68.31 4.59 10.1111/pce.13788 NA NA t4081.T002256 QTL_for_FWSH 4 FWSH QTL mapping RIL population recombinant inbred line 2166180 NA 0 0 0 0 25.92 4.01 10.1111/pce.13788 NA NA t4081.T002257 QTL_for_DWSH 4 DWSH QTL mapping RIL population recombinant inbred line 72831305 NA 0 0 0 0 92.75 3.12 10.1111/pce.13788 NA NA t4081.T002258 QTL_for_DWSH 4 DWSH QTL mapping RIL population recombinant inbred line 69683843 NA 0 0 0 0 68.31 3.25 10.1111/pce.13788 NA NA t4081.T002259 QTL_for_FWR 4 FWR QTL mapping RIL population recombinant inbred line 60676124 NA 0 0 0 0 63.42 5.5 10.1111/pce.13788 NA NA t4081.T002260 QTL_for_FWR 4 FWR QTL mapping RIL population recombinant inbred line 40758834 NA 0 0 0 0 54.83 3.01 10.1111/pce.13788 NA NA t4081.T002261 QTL_for_FWR 4 FWR QTL mapping RIL population recombinant inbred line 61700076 NA 0 0 0 0 67.69 6.62 10.1111/pce.13788 NA NA t4081.T002262 QTL_for_FWR 4 FWR QTL mapping RIL population recombinant inbred line 48283991 NA 0 0 0 0 26.75 4.11 10.1111/pce.13788 NA NA t4081.T002263 QTL_for_DWR 4 DWR QTL mapping RIL population recombinant inbred line 62161978 NA 0 0 0 0 69.81 7.15 10.1111/pce.13788 NA NA t4081.T002264 QTL_for_DWR 4 DWR QTL mapping RIL population recombinant inbred line 63534969 NA 0 0 0 0 101.68 4.81 10.1111/pce.13788 NA NA t4081.T002265 QTL_for_DWR 4 DWR QTL mapping RIL population recombinant inbred line 40758834 NA 0 0 0 0 54.83 3.29 10.1111/pce.13788 NA NA t4081.T002266 QTL_for_DWR 4 DWR QTL mapping RIL population recombinant inbred line 60676124 NA 0 0 0 0 63.42 6.14 10.1111/pce.13788 NA NA t4081.T002267 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S007799 NA 1 4 0 0 0 25 10.3389/fpls.2024.1482241 NA NA t4081.T002268 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S041728 NA 2 1 0 0 0 0 10.3389/fpls.2024.1482241 NA NA t4081.T002269 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S062682 NA 3 25 0 0 0 43.5 10.3389/fpls.2024.1482241 NA NA t4081.T002270 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S067953 NA 3 41 0 0 0 43.5 10.3389/fpls.2024.1482241 NA NA t4081.T002271 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S071101 NA 3 53 0 0 0 45.5 10.3389/fpls.2024.1482241 NA NA t4081.T002272 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S073550 NA 3 62 0 0 0 67.1 10.3389/fpls.2024.1482241 NA NA t4081.T002273 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S073624 NA 3 63 0 0 0 67.7 10.3389/fpls.2024.1482241 NA NA t4081.T002274 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S073679 NA 3 63 0 0 0 69.4 10.3389/fpls.2024.1482241 NA NA t4081.T002275 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S091891 NA 5 5 0 0 0 32.4 10.3389/fpls.2024.1482241 NA NA t4081.T002276 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0102069 NA 5 47 0 0 0 44.6 10.3389/fpls.2024.1482241 NA NA t4081.T002277 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0115003 NA 6 26 0 0 0 11.2 10.3389/fpls.2024.1482241 NA NA t4081.T002278 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0117277 NA 6 33 0 0 0 11.8 10.3389/fpls.2024.1482241 NA NA t4081.T002279 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0118214 NA 6 39 0 0 0 45.3 10.3389/fpls.2024.1482241 NA NA t4081.T002280 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0118736 NA 6 42 0 0 0 58.8 10.3389/fpls.2024.1482241 NA NA t4081.T002281 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0118902 NA 6 43 0 0 0 64.8 10.3389/fpls.2024.1482241 NA NA t4081.T002282 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0119039 NA 6 44 0 0 0 67.5 10.3389/fpls.2024.1482241 NA NA t4081.T002283 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0119117 NA 6 44 0 0 0 68.6 10.3389/fpls.2024.1482241 NA NA t4081.T002284 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0119207 NA 6 45 0 0 0 72.2 10.3389/fpls.2024.1482241 NA NA t4081.T002285 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0119822 NA 7 1 0 0 0 0 10.3389/fpls.2024.1482241 NA NA t4081.T002286 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0133732 NA 7 65 0 0 0 65.3 10.3389/fpls.2024.1482241 NA NA t4081.T002287 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0133903 NA 7 67 0 0 0 79 10.3389/fpls.2024.1482241 NA NA t4081.T002288 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0172765 NA 10 17 0 0 0 25 10.3389/fpls.2024.1482241 NA NA t4081.T002289 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0175884 NA 10 22 0 0 0 25 10.3389/fpls.2024.1482241 NA NA t4081.T002290 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0177499 NA 10 25 0 0 0 25 10.3389/fpls.2024.1482241 NA NA t4081.T002291 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0180184 NA 10 30 0 0 0 25 10.3389/fpls.2024.1482241 NA NA t4081.T002292 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0182836 NA 10 34 0 0 0 25 10.3389/fpls.2024.1482241 NA NA t4081.T002293 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0188391 NA 10 42 0 0 0 25 10.3389/fpls.2024.1482241 NA NA t4081.T002294 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0190237 NA 10 47 0 0 0 26.2 10.3389/fpls.2024.1482241 NA NA t4081.T002295 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0194142 NA 10 57 0 0 0 30 10.3389/fpls.2024.1482241 NA NA t4081.T002296 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0194704 NA 10 60 0 0 0 38.2 10.3389/fpls.2024.1482241 NA NA t4081.T002297 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0194933 NA 10 62 0 0 0 51.1 10.3389/fpls.2024.1482241 NA NA t4081.T002298 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0195109 NA 10 63 0 0 0 62.4 10.3389/fpls.2024.1482241 NA NA t4081.T002299 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0195403 NA 10 64 0 0 0 67.2 10.3389/fpls.2024.1482241 NA NA t4081.T002300 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0195527 NA 10 64 0 0 0 69.6 10.3389/fpls.2024.1482241 NA NA t4081.T002301 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0195717 NA 10 64 0 0 0 85.2 10.3389/fpls.2024.1482241 NA NA t4081.T002302 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0196989 NA 11 5 0 0 0 36.1 10.3389/fpls.2024.1482241 NA NA t4081.T002303 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0213151 NA 11 30 0 0 0 62.9 10.3389/fpls.2024.1482241 NA NA t4081.T002304 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0214214 NA 11 32 0 0 0 62.9 10.3389/fpls.2024.1482241 NA NA t4081.T002305 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0217066 NA 11 36 0 0 0 62.9 10.3389/fpls.2024.1482241 NA NA t4081.T002306 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0219423 NA 11 39 0 0 0 62.9 10.3389/fpls.2024.1482241 NA NA t4081.T002307 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0220069 NA 11 40 0 0 0 62.9 10.3389/fpls.2024.1482241 NA NA t4081.T002308 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0228219 NA 11 49 0 0 0 64.6 10.3389/fpls.2024.1482241 NA NA t4081.T002309 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0228995 NA 11 50 0 0 0 65.5 10.3389/fpls.2024.1482241 NA NA t4081.T002310 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0229272 NA 11 51 0 0 0 66.4 10.3389/fpls.2024.1482241 NA NA t4081.T002311 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0230640 NA 12 0 0 0 0 0 10.3389/fpls.2024.1482241 NA NA t4081.T002312 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0230946 NA 12 1 0 0 0 14.6 10.3389/fpls.2024.1482241 NA NA t4081.T002313 1 Late blight resistance Bidirectional TBA PI 270442 × Fla. 8059 F2 S0243685 NA 12 55 0 0 0 60.1 10.3389/fpls.2024.1482241 NA NA t4081.T002314 1 Bacterial wilt resistance Composite interval mapping NC 84173 × CLN1466EA F2 NA 0 0 0 0 2.2 2.7 10.3390/plants13060876 NA NA t4081.T002315 1 Bacterial wilt resistance Composite interval mapping NC 84173 × CLN1466EA F2 NA 0 0 0 0 42.9 2.5 10.3390/plants13060876 NA NA t4081.T002316 1 Bacterial wilt resistance Composite interval mapping NC 84173 × CLN1466EA F2 NA 0 0 0 0 54.2 3.1 10.3390/plants13060876 NA NA t4081.T002317 3 Plant height Composite interval mapping NC 84173 × CLN1466EA F2 NA 0 0 0 0 4.1 3.2 10.3390/plants13060876 NA NA t4081.T002318 3 Plant height Composite interval mapping NC 84173 × CLN1466EA F2 NA 0 0 0 0 90.7 4.5 10.3390/plants13060876 NA NA t4081.T002319 3 Plant height Composite interval mapping NC 84173 × CLN1466EA F2 NA 0 0 0 0 32.8 4.8 10.3390/plants13060876 NA NA t4081.T002320 5 Brix GWAS TGC1 and TGC2 SLA780841 NA 1 5 0 0 0 0.00407056580820 10.3390/ijms25063331 NA NA t4081.T002321 5 Brix GWAS TGC1 and TGC2 SLA768266 NA 1 5 0 0 0 0.00269719444304 10.3390/ijms25063331 NA NA t4081.T002322 5 Brix GWAS TGC1 and TGC2 SLA807993 NA 1 5 0 0 0 0.00253602445761 10.3390/ijms25063331 NA NA t4081.T002323 5 Brix GWAS TGC1 and TGC2 SLA788775 NA 1 5 0 0 0 3.72049321504074 10.3390/ijms25063331 NA NA t4081.T002324 5 Brix GWAS TGC1 and TGC2 SLA776792 NA 1 5 0 0 0 3.04158893740222 10.3390/ijms25063331 NA NA t4081.T002325 5 Brix GWAS TGC1 and TGC2 SLA786478 NA 1 6 0 0 0 3.88345599960923 10.3390/ijms25063331 NA NA t4081.T002326 5 Brix GWAS TGC1 and TGC2 SLA788850 NA 1 71 0 0 0 0.00499528294437 10.3390/ijms25063331 NA NA t4081.T002327 5 Brix GWAS TGC1 and TGC2 SLA812826 NA 1 71 0 0 0 0.00465191712069 10.3390/ijms25063331 NA NA t4081.T002328 5 Brix GWAS TGC1 and TGC2 SLA777158 NA 1 71 0 0 0 0.00148335195732 10.3390/ijms25063331 NA NA t4081.T002329 5 Brix GWAS TGC1 and TGC2 SLA781739 NA 1 71 0 0 0 0.00372140945030 10.3390/ijms25063331 NA NA t4081.T002330 5 Brix GWAS TGC1 and TGC2 SLA799520 NA 1 71 0 0 0 0.00074266241274 10.3390/ijms25063331 NA NA t4081.T002331 5 Brix GWAS TGC1 and TGC2 SLA794006 NA 1 71 0 0 0 0.00564655035179 10.3390/ijms25063331 NA NA t4081.T002332 5 Brix GWAS TGC1 and TGC2 SLA797666 NA 1 72 0 0 0 0.00360469426834 10.3390/ijms25063331 NA NA t4081.T002333 5 Brix GWAS TGC1 and TGC2 SLA783043 NA 1 72 0 0 0 0.00186964752562 10.3390/ijms25063331 NA NA t4081.T002334 5 Brix GWAS TGC1 and TGC2 SLA809586 NA 1 72 0 0 0 0.00330964447695 10.3390/ijms25063331 NA NA t4081.T002335 5 Brix GWAS TGC1 and TGC2 SLA810700 NA 1 72 0 0 0 0.00358312465513 10.3390/ijms25063331 NA NA t4081.T002336 5 Brix GWAS TGC1 and TGC2 SLA777776 NA 1 72 0 0 0 0.00347889629619 10.3390/ijms25063331 NA NA t4081.T002337 5 Brix GWAS TGC1 and TGC2 SLA777173 NA 1 72 0 0 0 0.00347889629619 10.3390/ijms25063331 NA NA t4081.T002338 5 Brix GWAS TGC1 and TGC2 SLA804639 NA 1 73 0 0 0 0.00050358077783 10.3390/ijms25063331 NA NA t4081.T002339 5 Brix GWAS TGC1 and TGC2 SLA808832 NA 1 76 0 0 0 0.00143739687686 10.3390/ijms25063331 NA NA t4081.T002340 5 Brix GWAS TGC1 and TGC2 SLA799791 NA 1 77 0 0 0 0.00295760800253 10.3390/ijms25063331 NA NA t4081.T002341 5 Brix GWAS TGC1 and TGC2 SLA772895 NA 1 77 0 0 0 0.00395073181484 10.3390/ijms25063331 NA NA t4081.T002342 5 Brix GWAS TGC1 and TGC2 SLA805724 NA 1 87 0 0 0 0.00319819502998 10.3390/ijms25063331 NA NA t4081.T002343 5 Brix GWAS TGC1 and TGC2 SLA784117 NA 1 87 0 0 0 0.00455782218415 10.3390/ijms25063331 NA NA t4081.T002344 5 Brix GWAS TGC1 and TGC2 SLA771299 NA 1 88 0 0 0 0.00113152500943 10.3390/ijms25063331 NA NA t4081.T002345 5 Brix GWAS TGC1 and TGC2 SLA781778 NA 1 88 0 0 0 0.00342768465344 10.3390/ijms25063331 NA NA t4081.T002346 5 Brix GWAS TGC1 and TGC2 SLA799536 NA 1 89 0 0 0 0.00238177901723 10.3390/ijms25063331 NA NA t4081.T002347 5 Brix GWAS TGC1 and TGC2 SLA793320 NA 1 89 0 0 0 0.00305427659098 10.3390/ijms25063331 NA NA t4081.T002348 5 Brix GWAS TGC1 and TGC2 SLA798855 NA 1 89 0 0 0 0.00377012641572 10.3390/ijms25063331 NA NA t4081.T002349 5 Brix GWAS TGC1 and TGC2 SLA770904 NA 1 89 0 0 0 0.00414889772313 10.3390/ijms25063331 NA NA t4081.T002350 5 Brix GWAS TGC1 and TGC2 SLA780924 NA 1 89 0 0 0 0.00392056566008 10.3390/ijms25063331 NA NA t4081.T002351 5 Brix GWAS TGC1 and TGC2 SLA806810 NA 1 89 0 0 0 0.00314812150214 10.3390/ijms25063331 NA NA t4081.T002352 5 Brix GWAS TGC1 and TGC2 SLA779972 NA 2 32 0 0 0 0.00160717744725 10.3390/ijms25063331 NA NA t4081.T002353 5 Brix GWAS TGC1 and TGC2 SLA784322 NA 2 33 0 0 0 0.00087653851739 10.3390/ijms25063331 NA NA t4081.T002354 5 Brix GWAS TGC1 and TGC2 SLA778491 NA 2 38 0 0 0 0.00028245091241 10.3390/ijms25063331 NA NA t4081.T002355 5 Brix GWAS TGC1 and TGC2 SLA817494 NA 2 38 0 0 0 0.00252857994491 10.3390/ijms25063331 NA NA t4081.T002356 5 Brix GWAS TGC1 and TGC2 SLA772050 NA 2 38 0 0 0 3.07425505974415 10.3390/ijms25063331 NA NA t4081.T002357 5 Brix GWAS TGC1 and TGC2 SLA816763 NA 2 38 0 0 0 0.00067641028211 10.3390/ijms25063331 NA NA t4081.T002358 5 Brix GWAS TGC1 and TGC2 SLA808060 NA 2 43 0 0 0 0.00177065767333 10.3390/ijms25063331 NA NA t4081.T002359 5 Brix GWAS TGC1 and TGC2 SLA809712 NA 2 43 0 0 0 0.00191217554271 10.3390/ijms25063331 NA NA t4081.T002360 5 Brix GWAS TGC1 and TGC2 SLA770571 NA 2 43 0 0 0 0.00559021236957 10.3390/ijms25063331 NA NA t4081.T002361 5 Brix GWAS TGC1 and TGC2 SLA803862 NA 2 43 0 0 0 0.00356731432518 10.3390/ijms25063331 NA NA t4081.T002362 5 Brix GWAS TGC1 and TGC2 SLA782083 NA 2 43 0 0 0 0.00302752399571 10.3390/ijms25063331 NA NA t4081.T002363 5 Brix GWAS TGC1 and TGC2 SLA781237 NA 2 44 0 0 0 0.00469003453522 10.3390/ijms25063331 NA NA t4081.T002364 5 Brix GWAS TGC1 and TGC2 SLA796042 NA 2 44 0 0 0 0.00268652010482 10.3390/ijms25063331 NA NA t4081.T002365 5 Brix GWAS TGC1 and TGC2 SLA780476 NA 3 2 0 0 0 0.00319043339058 10.3390/ijms25063331 NA NA t4081.T002366 5 Brix GWAS TGC1 and TGC2 SLA808150 NA 3 2 0 0 0 0.00403935178598 10.3390/ijms25063331 NA NA t4081.T002367 5 Brix GWAS TGC1 and TGC2 SLA787698 NA 3 2 0 0 0 0.00356946980113 10.3390/ijms25063331 NA NA t4081.T002368 5 Brix GWAS TGC1 and TGC2 SLA777367 NA 3 2 0 0 0 0.00366104504344 10.3390/ijms25063331 NA NA t4081.T002369 5 Brix GWAS TGC1 and TGC2 SLA810509 NA 3 2 0 0 0 0.00290719383250 10.3390/ijms25063331 NA NA 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SLA806482 NA 12 29 0 0 0 0.00626835809101 10.3390/ijms25063331 NA NA t4081.T002825 4 Fruit width GWAS TGC1 and TGC2 SLA816007 NA 12 62 0 0 0 0.00179543800871 10.3390/ijms25063331 NA NA t4081.T002826 4 Fruit width GWAS TGC1 and TGC2 SLA786349 NA 12 63 0 0 0 0.00582510512472 10.3390/ijms25063331 NA NA t4081.T002827 4 Fruit width GWAS TGC1 and TGC2 SLA771475 NA 12 63 0 0 0 0.00030654746463 10.3390/ijms25063331 NA NA t4081.T002828 4 Fruit width GWAS TGC1 and TGC2 SLA771109 NA 12 63 0 0 0 0.00058121993788 10.3390/ijms25063331 NA NA t4081.T002829 4 Fruit width GWAS TGC1 and TGC2 SLA782937 NA 12 63 0 0 0 0.00101589776338 10.3390/ijms25063331 NA NA t4081.T002830 4 Fruit width GWAS TGC1 and TGC2 SLA789442 NA 12 63 0 0 0 0.00600677996179 10.3390/ijms25063331 NA NA t4081.T002831 4 Fruit width GWAS TGC1 and TGC2 SLA815904 NA 12 63 0 0 0 0.00055691126217 10.3390/ijms25063331 NA NA t4081.T002832 4 Fruit width GWAS TGC1 and TGC2 SLA770600 NA 12 63 0 0 0 0.00050289878073 10.3390/ijms25063331 NA NA 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thickness GWAS TGC1 and TGC2 SLA787631 NA 3 1 0 0 0 0.00593942328761 10.3390/ijms25063331 NA NA t4081.T002875 4 Pericarp thickness GWAS TGC1 and TGC2 SLA774175 NA 3 1 0 0 0 0.00362358619209 10.3390/ijms25063331 NA NA t4081.T002876 4 Pericarp thickness GWAS TGC1 and TGC2 SLA789675 NA 3 1 0 0 0 0.00394157614857 10.3390/ijms25063331 NA NA t4081.T002877 4 Pericarp thickness GWAS TGC1 and TGC2 SLA779376 NA 3 1 0 0 0 0.00601458240929 10.3390/ijms25063331 NA NA t4081.T002878 4 Pericarp thickness GWAS TGC1 and TGC2 SLA812485 NA 3 1 0 0 0 0.00511891646988 10.3390/ijms25063331 NA NA t4081.T002879 4 Pericarp thickness GWAS TGC1 and TGC2 SLA773633 NA 3 1 0 0 0 0.00593942328761 10.3390/ijms25063331 NA NA t4081.T002880 4 Pericarp thickness GWAS TGC1 and TGC2 SLA811158 NA 3 1 0 0 0 0.00601796919300 10.3390/ijms25063331 NA NA t4081.T002881 4 Pericarp thickness GWAS TGC1 and TGC2 SLA772884 NA 3 1 0 0 0 0.00601796919300 10.3390/ijms25063331 NA NA t4081.T002882 4 Pericarp thickness GWAS TGC1 and TGC2 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0.00182214019326 10.3390/ijms25063331 NA NA t4081.T002891 4 Pericarp thickness GWAS TGC1 and TGC2 SLA787432 NA 3 1 0 0 0 0.00593942328761 10.3390/ijms25063331 NA NA t4081.T002892 4 Pericarp thickness GWAS TGC1 and TGC2 SLA786531 NA 3 1 0 0 0 0.00398038810851 10.3390/ijms25063331 NA NA t4081.T002893 4 Pericarp thickness GWAS TGC1 and TGC2 SLA778140 NA 3 1 0 0 0 0.00322371571458 10.3390/ijms25063331 NA NA t4081.T002894 4 Pericarp thickness GWAS TGC1 and TGC2 SLA776958 NA 3 1 0 0 0 0.00601796919300 10.3390/ijms25063331 NA NA t4081.T002895 4 Pericarp thickness GWAS TGC1 and TGC2 SLA782452 NA 3 1 0 0 0 0.00601796919300 10.3390/ijms25063331 NA NA t4081.T002896 4 Pericarp thickness GWAS TGC1 and TGC2 SLA807654 NA 3 1 0 0 0 0.00593942328761 10.3390/ijms25063331 NA NA t4081.T002897 4 Pericarp thickness GWAS TGC1 and TGC2 SLA813899 NA 3 1 0 0 0 0.00511891646988 10.3390/ijms25063331 NA NA t4081.T002898 4 Pericarp thickness GWAS TGC1 and TGC2 SLA772507 NA 3 1 0 0 0 0.00369889208572 10.3390/ijms25063331 NA NA t4081.T002899 4 Pericarp thickness GWAS TGC1 and TGC2 SLA797831 NA 3 1 0 0 0 0.00361930671972 10.3390/ijms25063331 NA NA t4081.T002900 4 Pericarp thickness GWAS TGC1 and TGC2 SLA815669 NA 3 1 0 0 0 0.00394715755310 10.3390/ijms25063331 NA NA t4081.T002901 4 Pericarp thickness GWAS TGC1 and TGC2 SLA801952 NA 3 1 0 0 0 0.00634507070302 10.3390/ijms25063331 NA NA t4081.T002902 4 Pericarp thickness GWAS TGC1 and TGC2 SLA769652 NA 3 1 0 0 0 0.00369889208572 10.3390/ijms25063331 NA NA t4081.T002903 4 Pericarp thickness GWAS TGC1 and TGC2 SLA805999 NA 3 1 0 0 0 0.00032948764074 10.3390/ijms25063331 NA NA t4081.T002904 4 Pericarp thickness GWAS TGC1 and TGC2 SLA800006 NA 3 51 0 0 0 0.00190101848162 10.3390/ijms25063331 NA NA t4081.T002905 4 Pericarp thickness GWAS TGC1 and TGC2 SLA798198 NA 3 58 0 0 0 0.00636092351085 10.3390/ijms25063331 NA NA t4081.T002906 4 Pericarp thickness GWAS TGC1 and TGC2 SLA788559 NA 3 58 0 0 0 0.00430473601307 10.3390/ijms25063331 NA NA t4081.T002907 4 Pericarp thickness GWAS TGC1 and TGC2 SLA770547 NA 3 62 0 0 0 0.00311043656261 10.3390/ijms25063331 NA NA t4081.T002908 4 Pericarp thickness GWAS TGC1 and TGC2 SLA787255 NA 4 3 0 0 0 0.00067477461503 10.3390/ijms25063331 NA NA t4081.T002909 4 Pericarp thickness GWAS TGC1 and TGC2 SLA798303 NA 4 3 0 0 0 0.00076457454020 10.3390/ijms25063331 NA NA t4081.T002910 4 Pericarp thickness GWAS TGC1 and TGC2 SLA800853 NA 4 3 0 0 0 0.00607347710622 10.3390/ijms25063331 NA NA t4081.T002911 4 Pericarp thickness GWAS TGC1 and TGC2 SLA785699 NA 4 4 0 0 0 0.00292460318412 10.3390/ijms25063331 NA NA t4081.T002912 4 Pericarp thickness GWAS TGC1 and TGC2 SLA817767 NA 4 6 0 0 0 0.00515739047320 10.3390/ijms25063331 NA NA t4081.T002913 4 Pericarp thickness GWAS TGC1 and TGC2 SLA775355 NA 4 6 0 0 0 0.00036038491969 10.3390/ijms25063331 NA NA t4081.T002914 4 Pericarp thickness GWAS TGC1 and TGC2 SLA809608 NA 4 55 0 0 0 0.00585855733130 10.3390/ijms25063331 NA NA t4081.T002915 4 Pericarp thickness GWAS TGC1 and TGC2 SLA796219 NA 4 59 0 0 0 0.00012512266590 10.3390/ijms25063331 NA NA t4081.T002916 4 Pericarp thickness GWAS TGC1 and TGC2 SLA777311 NA 4 59 0 0 0 1.05490567253587 10.3390/ijms25063331 NA NA t4081.T002917 4 Pericarp thickness GWAS TGC1 and TGC2 SLA818431 NA 4 59 0 0 0 0.00142034472845 10.3390/ijms25063331 NA NA t4081.T002918 4 Pericarp thickness GWAS TGC1 and TGC2 SLA813757 NA 4 59 0 0 0 0.00168092263490 10.3390/ijms25063331 NA NA t4081.T002919 4 Pericarp thickness GWAS TGC1 and TGC2 SLA796040 NA 4 59 0 0 0 0.00366741870605 10.3390/ijms25063331 NA NA t4081.T002920 4 Pericarp thickness GWAS TGC1 and TGC2 SLA789319 NA 5 4 0 0 0 0.00263115266315 10.3390/ijms25063331 NA NA t4081.T002921 4 Pericarp thickness GWAS TGC1 and TGC2 SLA779812 NA 5 4 0 0 0 0.00328160823062 10.3390/ijms25063331 NA NA t4081.T002922 4 Pericarp thickness GWAS TGC1 and TGC2 SLA811030 NA 5 61 0 0 0 0.00308393185644 10.3390/ijms25063331 NA NA t4081.T002923 4 Pericarp thickness GWAS TGC1 and 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0 0 0.00419415602638 10.3390/ijms25063331 NA NA t4081.T002932 4 Pericarp thickness GWAS TGC1 and TGC2 SLA814939 NA 6 37 0 0 0 0.00416297675550 10.3390/ijms25063331 NA NA t4081.T002933 4 Pericarp thickness GWAS TGC1 and TGC2 SLA810429 NA 6 37 0 0 0 0.00262189569625 10.3390/ijms25063331 NA NA t4081.T002934 4 Pericarp thickness GWAS TGC1 and TGC2 SLA810391 NA 6 37 0 0 0 0.00262189569625 10.3390/ijms25063331 NA NA t4081.T002935 4 Pericarp thickness GWAS TGC1 and TGC2 SLA814793 NA 6 37 0 0 0 0.00232470962844 10.3390/ijms25063331 NA NA t4081.T002936 4 Pericarp thickness GWAS TGC1 and TGC2 SLA780753 NA 6 37 0 0 0 0.00588394928183 10.3390/ijms25063331 NA NA t4081.T002937 4 Pericarp thickness GWAS TGC1 and TGC2 SLA793945 NA 6 37 0 0 0 0.00528215156055 10.3390/ijms25063331 NA NA t4081.T002938 4 Pericarp thickness GWAS TGC1 and TGC2 SLA787892 NA 7 55 0 0 0 0.00591196765437 10.3390/ijms25063331 NA NA t4081.T002939 4 Pericarp thickness GWAS TGC1 and TGC2 SLA783493 NA 7 62 0 0 0 0.00043851587284 10.3390/ijms25063331 NA NA t4081.T002940 4 Pericarp thickness GWAS TGC1 and TGC2 SLA796390 NA 7 63 0 0 0 0.00565012132328 10.3390/ijms25063331 NA NA t4081.T002941 4 Pericarp thickness GWAS TGC1 and TGC2 SLA800320 NA 7 63 0 0 0 0.00592389444839 10.3390/ijms25063331 NA NA t4081.T002942 4 Pericarp thickness GWAS TGC1 and TGC2 SLA801303 NA 8 53 0 0 0 0.00186263652692 10.3390/ijms25063331 NA NA t4081.T002943 4 Pericarp thickness GWAS TGC1 and TGC2 SLA786915 NA 8 54 0 0 0 0.00115244003360 10.3390/ijms25063331 NA NA t4081.T002944 4 Pericarp thickness GWAS TGC1 and TGC2 SLA806895 NA 8 55 0 0 0 0.00275226770521 10.3390/ijms25063331 NA NA t4081.T002945 4 Pericarp thickness GWAS TGC1 and TGC2 SLA802708 NA 9 1 0 0 0 0.00583483086232 10.3390/ijms25063331 NA NA t4081.T002946 4 Pericarp thickness GWAS TGC1 and TGC2 SLA814786 NA 9 1 0 0 0 0.00354572943303 10.3390/ijms25063331 NA NA t4081.T002947 4 Pericarp thickness GWAS TGC1 and TGC2 SLA785975 NA 9 1 0 0 0 5.16794027566898 10.3390/ijms25063331 NA NA t4081.T002948 4 Pericarp thickness GWAS TGC1 and TGC2 SLA771594 NA 9 1 0 0 0 5.16794027566898 10.3390/ijms25063331 NA NA t4081.T002949 4 Pericarp thickness GWAS TGC1 and TGC2 SLA796357 NA 9 1 0 0 0 0.00023414988287 10.3390/ijms25063331 NA NA t4081.T002950 4 Pericarp thickness GWAS TGC1 and TGC2 SLA777282 NA 9 1 0 0 0 5.16794027566898 10.3390/ijms25063331 NA NA t4081.T002951 4 Pericarp thickness GWAS TGC1 and TGC2 SLA782236 NA 9 1 0 0 0 5.16794027566898 10.3390/ijms25063331 NA NA t4081.T002952 4 Pericarp thickness GWAS TGC1 and TGC2 SLA785564 NA 9 1 0 0 0 0.00142643176013 10.3390/ijms25063331 NA NA t4081.T002953 4 Pericarp thickness GWAS TGC1 and TGC2 SLA798731 NA 9 1 0 0 0 0.00446434237022 10.3390/ijms25063331 NA NA t4081.T002954 4 Pericarp thickness GWAS TGC1 and TGC2 SLA803859 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T002955 4 Pericarp thickness GWAS TGC1 and TGC2 SLA810813 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T002956 4 Pericarp thickness GWAS TGC1 and TGC2 SLA801460 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T002957 4 Pericarp thickness GWAS TGC1 and TGC2 SLA804038 NA 9 1 0 0 0 0.00038397767445 10.3390/ijms25063331 NA NA t4081.T002958 4 Pericarp thickness GWAS TGC1 and TGC2 SLA781525 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T002959 4 Pericarp thickness GWAS TGC1 and TGC2 SLA773718 NA 9 1 0 0 0 0.00038397767445 10.3390/ijms25063331 NA NA t4081.T002960 4 Pericarp thickness GWAS TGC1 and TGC2 SLA784089 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T002961 4 Pericarp thickness GWAS TGC1 and TGC2 SLA788740 NA 9 1 0 0 0 0.00017047872669 10.3390/ijms25063331 NA NA t4081.T002962 4 Pericarp thickness GWAS TGC1 and TGC2 SLA780292 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T002963 4 Pericarp thickness GWAS TGC1 and TGC2 SLA772402 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T002964 4 Pericarp thickness GWAS TGC1 and TGC2 SLA804287 NA 9 1 0 0 0 0.00038397767445 10.3390/ijms25063331 NA NA t4081.T002965 4 Pericarp thickness GWAS TGC1 and TGC2 SLA780556 NA 9 1 0 0 0 0.00038397767445 10.3390/ijms25063331 NA NA t4081.T002966 4 Pericarp thickness GWAS TGC1 and TGC2 SLA807744 NA 9 1 0 0 0 0.00038397767445 10.3390/ijms25063331 NA NA t4081.T002967 4 Pericarp thickness GWAS TGC1 and TGC2 SLA788011 NA 9 1 0 0 0 0.00039269694306 10.3390/ijms25063331 NA NA t4081.T002968 4 Pericarp thickness GWAS TGC1 and TGC2 SLA800498 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T002969 4 Pericarp thickness GWAS TGC1 and TGC2 SLA803097 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T002970 4 Pericarp thickness GWAS TGC1 and TGC2 SLA796300 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T002971 4 Pericarp thickness GWAS TGC1 and TGC2 SLA811264 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T002972 4 Pericarp thickness GWAS TGC1 and TGC2 SLA785614 NA 9 1 0 0 0 0.00405244267442 10.3390/ijms25063331 NA NA t4081.T002973 4 Pericarp thickness GWAS TGC1 and TGC2 SLA789052 NA 9 1 0 0 0 0.00500010429546 10.3390/ijms25063331 NA NA t4081.T002974 4 Pericarp thickness GWAS TGC1 and TGC2 SLA799199 NA 9 2 0 0 0 0.00315064183769 10.3390/ijms25063331 NA NA t4081.T002975 4 Pericarp thickness GWAS TGC1 and TGC2 SLA789064 NA 9 2 0 0 0 0.00194935138221 10.3390/ijms25063331 NA NA t4081.T002976 4 Pericarp thickness GWAS TGC1 and TGC2 SLA795355 NA 9 3 0 0 0 0.00534100019332 10.3390/ijms25063331 NA NA t4081.T002977 4 Pericarp thickness GWAS TGC1 and TGC2 SLA777551 NA 9 3 0 0 0 0.00035025985381 10.3390/ijms25063331 NA NA t4081.T002978 4 Pericarp thickness GWAS TGC1 and TGC2 SLA778598 NA 9 3 0 0 0 0.00630781960204 10.3390/ijms25063331 NA NA t4081.T002979 4 Pericarp thickness GWAS TGC1 and TGC2 SLA783570 NA 9 3 0 0 0 0.00444802170889 10.3390/ijms25063331 NA NA t4081.T002980 4 Pericarp thickness GWAS TGC1 and TGC2 SLA808297 NA 9 3 0 0 0 0.00444802170889 10.3390/ijms25063331 NA NA t4081.T002981 4 Pericarp thickness GWAS TGC1 and TGC2 SLA792129 NA 9 4 0 0 0 0.00365692528073 10.3390/ijms25063331 NA NA t4081.T002982 4 Pericarp thickness GWAS TGC1 and TGC2 SLA784222 NA 9 7 0 0 0 0.00196302516071 10.3390/ijms25063331 NA NA t4081.T002983 4 Pericarp thickness GWAS TGC1 and TGC2 SLA798863 NA 9 67 0 0 0 0.00583034486558 10.3390/ijms25063331 NA NA t4081.T002984 4 Pericarp thickness GWAS TGC1 and TGC2 SLA814229 NA 9 67 0 0 0 0.00385080722144 10.3390/ijms25063331 NA NA t4081.T002985 4 Pericarp thickness GWAS TGC1 and TGC2 SLA815592 NA 9 67 0 0 0 0.00182758298953 10.3390/ijms25063331 NA NA t4081.T002986 4 Pericarp thickness GWAS TGC1 and TGC2 SLA818443 NA 11 48 0 0 0 0.00262481370668 10.3390/ijms25063331 NA NA t4081.T002987 4 Pericarp thickness GWAS TGC1 and TGC2 SLA798934 NA 11 50 0 0 0 0.00524584928200 10.3390/ijms25063331 NA NA t4081.T002988 4 Pericarp thickness GWAS TGC1 and TGC2 SLA791677 NA 11 51 0 0 0 0.00349949321559 10.3390/ijms25063331 NA NA t4081.T002989 4 Pericarp thickness GWAS TGC1 and TGC2 SLA783517 NA 12 4 0 0 0 0.00274042828721 10.3390/ijms25063331 NA NA t4081.T002990 4 Pericarp thickness GWAS TGC1 and TGC2 SLA776156 NA 12 4 0 0 0 0.00639913481369 10.3390/ijms25063331 NA NA t4081.T002991 4 Pericarp thickness GWAS TGC1 and TGC2 SLA773901 NA 12 4 0 0 0 0.00624853168257 10.3390/ijms25063331 NA NA t4081.T002992 4 Pericarp thickness GWAS TGC1 and TGC2 SLA780958 NA 12 4 0 0 0 0.00372954197001 10.3390/ijms25063331 NA NA t4081.T002993 4 Pericarp thickness GWAS TGC1 and TGC2 SLA804670 NA 12 48 0 0 0 0.00338749099387 10.3390/ijms25063331 NA NA t4081.T002994 4 Pericarp thickness GWAS TGC1 and TGC2 SLA791740 NA 12 48 0 0 0 0.00571541967203 10.3390/ijms25063331 NA NA t4081.T002995 4 Pericarp thickness GWAS TGC1 and TGC2 SLA792657 NA 12 48 0 0 0 0.00401998756532 10.3390/ijms25063331 NA NA t4081.T002996 4 Pericarp thickness GWAS TGC1 and TGC2 SLA777436 NA 12 62 0 0 0 0.00313097392323 10.3390/ijms25063331 NA NA t4081.T002997 4 Pericarp thickness GWAS TGC1 and TGC2 SLA787924 NA 12 65 0 0 0 0.00092467511242 10.3390/ijms25063331 NA NA t4081.T002998 4 Common GWAS TGC1 and TGC2 SLA808842 NA 1 0 0 0 0 0.002397916, 0.0 10.3390/ijms25063331 NA NA t4081.T002999 4 Common GWAS TGC1 and TGC2 SLA793446 NA 1 4 0 0 0 0.006544506, 0.0 10.3390/ijms25063331 NA NA t4081.T003000 4 Common GWAS TGC1 and TGC2 SLA786207 NA 1 5 0 0 0 0.004358756, 0.0 10.3390/ijms25063331 NA NA t4081.T003001 4 Common GWAS TGC1 and TGC2 SLA804124 NA 1 15 0 0 0 0.004095535, 0.0 10.3390/ijms25063331 NA NA t4081.T003002 4 Common GWAS TGC1 and TGC2 SLA785484 NA 1 43 0 0 0 0.003623954, 0.0 10.3390/ijms25063331 NA NA t4081.T003003 4 Common GWAS TGC1 and TGC2 SLA793046 NA 1 47 0 0 0 0.006406313, 0.0 10.3390/ijms25063331 NA NA t4081.T003004 4 Common GWAS TGC1 and TGC2 SLA773077 NA 1 65 0 0 0 0.001401981, 0.0 10.3390/ijms25063331 NA NA t4081.T003005 4 Common GWAS TGC1 and TGC2 SLA805623 NA 1 70 0 0 0 0.003050679, 0.0 10.3390/ijms25063331 NA NA t4081.T003006 4 Common GWAS TGC1 and TGC2 SLA781717 NA 1 75 0 0 0 0.00041807, 0.00 10.3390/ijms25063331 NA NA t4081.T003007 4 Common GWAS TGC1 and TGC2 SLA802093 NA 1 77 0 0 0 4.5651E12, 3.580 10.3390/ijms25063331 NA NA t4081.T003008 4 Common GWAS TGC1 and TGC2 SLA794583 NA 1 77 0 0 0 0.001843267, 0.0 10.3390/ijms25063331 NA NA t4081.T003009 4 Common GWAS TGC1 and TGC2 SLA777970 NA 1 77 0 0 0 0.003762636, 0.0 10.3390/ijms25063331 NA NA t4081.T003010 4 Common GWAS TGC1 and TGC2 SLA780043 NA 1 79 0 0 0 0.007152236, 0.0 10.3390/ijms25063331 NA NA t4081.T003011 4 Common GWAS TGC1 and TGC2 SLA814489 NA 1 81 0 0 0 0.001054468, 0.0 10.3390/ijms25063331 NA NA t4081.T003012 4 Common GWAS TGC1 and TGC2 SLA792985 NA 1 84 0 0 0 0.002062081, 0.0 10.3390/ijms25063331 NA NA t4081.T003013 4 Common GWAS TGC1 and TGC2 SLA800166 NA 1 84 0 0 0 0.003637433, 0.0 10.3390/ijms25063331 NA NA t4081.T003014 4 Common GWAS TGC1 and TGC2 SLA792955 NA 1 86 0 0 0 0.001548535, 0.0 10.3390/ijms25063331 NA NA t4081.T003015 4 Common GWAS TGC1 and TGC2 SLA804243 NA 1 86 0 0 0 0.001548535, 0.0 10.3390/ijms25063331 NA NA t4081.T003016 4 Common GWAS TGC1 and TGC2 SLA806757 NA 2 32 0 0 0 0.001253864, 0.0 10.3390/ijms25063331 NA NA t4081.T003017 4 Common GWAS TGC1 and TGC2 SLA790460 NA 2 32 0 0 0 0.002327223, 0.0 10.3390/ijms25063331 NA NA t4081.T003018 4 Common GWAS TGC1 and TGC2 SLA800925 NA 2 32 0 0 0 0.001742457, 0.0 10.3390/ijms25063331 NA NA t4081.T003019 4 Common GWAS TGC1 and TGC2 SLA807619 NA 2 32 0 0 0 0.005822965, 0.0 10.3390/ijms25063331 NA NA t4081.T003020 4 Common GWAS TGC1 and TGC2 SLA785271 NA 2 32 0 0 0 0.000741129, 0.0 10.3390/ijms25063331 NA NA t4081.T003021 4 Common GWAS TGC1 and TGC2 SLA814365 NA 2 32 0 0 0 1.35784E05, 0.00 10.3390/ijms25063331 NA NA t4081.T003022 4 Common GWAS TGC1 and TGC2 SLA774830 NA 2 32 0 0 0 0.006278033, 0.0 10.3390/ijms25063331 NA NA t4081.T003023 4 Common GWAS TGC1 and TGC2 SLA807639 NA 2 35 0 0 0 0.003735704, 0.0 10.3390/ijms25063331 NA NA t4081.T003024 4 Common GWAS TGC1 and TGC2 SLA778779 NA 2 40 0 0 0 0.000219197, 0.0 10.3390/ijms25063331 NA NA t4081.T003025 4 Common GWAS TGC1 and TGC2 SLA772277 NA 2 40 0 0 0 0.000123109, 0.0 10.3390/ijms25063331 NA NA t4081.T003026 4 Common GWAS TGC1 and TGC2 SLA788743 NA 2 40 0 0 0 0.005868957, 0.0 10.3390/ijms25063331 NA NA t4081.T003027 4 Common GWAS TGC1 and TGC2 SLA796841 NA 2 42 0 0 0 0.000220757, 2.1 10.3390/ijms25063331 NA NA t4081.T003028 4 Common GWAS TGC1 and TGC2 SLA802707 NA 2 43 0 0 0 0.001070419, 0.0 10.3390/ijms25063331 NA NA t4081.T003029 4 Common GWAS TGC1 and TGC2 SLA799763 NA 2 48 0 0 0 2.9699E05, 6.312 10.3390/ijms25063331 NA NA t4081.T003030 4 Common GWAS TGC1 and TGC2 SLA793209 NA 3 2 0 0 0 0.005166336, 0.0 10.3390/ijms25063331 NA NA t4081.T003031 4 Common GWAS TGC1 and TGC2 SLA813750 NA 3 58 0 0 0 0.008025919, 0.0 10.3390/ijms25063331 NA NA t4081.T003032 4 Common GWAS TGC1 and TGC2 SLA792872 NA 3 58 0 0 0 0.007241054, 0.0 10.3390/ijms25063331 NA NA t4081.T003033 4 Common GWAS TGC1 and TGC2 SLA781579 NA 3 60 0 0 0 0.003847294, 0.0 10.3390/ijms25063331 NA NA t4081.T003034 4 Common GWAS TGC1 and TGC2 SLA814562 NA 3 60 0 0 0 0.002844144, 0.0 10.3390/ijms25063331 NA NA t4081.T003035 4 Common GWAS TGC1 and TGC2 SLA796975 NA 3 62 0 0 0 0.004429767, 0.0 10.3390/ijms25063331 NA NA t4081.T003036 4 Common GWAS TGC1 and TGC2 SLA812598 NA 4 0 0 0 0 0.001360397, 0.0 10.3390/ijms25063331 NA NA t4081.T003037 4 Common GWAS TGC1 and TGC2 SLA784528 NA 4 1 0 0 0 0.005492526, 0.0 10.3390/ijms25063331 NA NA t4081.T003038 4 Common GWAS TGC1 and TGC2 SLA798726 NA 4 2 0 0 0 0.002893704, 0.0 10.3390/ijms25063331 NA NA t4081.T003039 4 Common GWAS TGC1 and TGC2 SLA782251 NA 4 3 0 0 0 0.003264161, 0.0 10.3390/ijms25063331 NA NA t4081.T003040 4 Common GWAS TGC1 and TGC2 SLA795101 NA 4 3 0 0 0 0.002489445, 0.0 10.3390/ijms25063331 NA NA t4081.T003041 4 Common GWAS TGC1 and TGC2 SLA783695 NA 4 3 0 0 0 0.002489445, 0.0 10.3390/ijms25063331 NA NA t4081.T003042 4 Common GWAS TGC1 and TGC2 SLA802196 NA 4 3 0 0 0 0.002489445, 0.0 10.3390/ijms25063331 NA NA t4081.T003043 4 Common GWAS TGC1 and TGC2 SLA784642 NA 4 3 0 0 0 0.002947639, 0.0 10.3390/ijms25063331 NA NA t4081.T003044 4 Common GWAS TGC1 and TGC2 SLA815286 NA 4 56 0 0 0 0.00747617, 0.00 10.3390/ijms25063331 NA NA t4081.T003045 4 Common GWAS TGC1 and TGC2 SLA782011 NA 5 3 0 0 0 0.002211716, 0.0 10.3390/ijms25063331 NA NA t4081.T003046 4 Common GWAS TGC1 and TGC2 SLA789156 NA 5 4 0 0 0 0.006140263, 0.0 10.3390/ijms25063331 NA NA t4081.T003047 4 Common GWAS TGC1 and TGC2 SLA817368 NA 5 4 0 0 0 0.003609098, 0.0 10.3390/ijms25063331 NA NA t4081.T003048 4 Common GWAS TGC1 and TGC2 SLA779053 NA 5 8 0 0 0 0.00143182, 0.00 10.3390/ijms25063331 NA NA t4081.T003049 4 Common GWAS TGC1 and TGC2 SLA805429 NA 5 59 0 0 0 0.004787221, 0.0 10.3390/ijms25063331 NA NA t4081.T003050 4 Common GWAS TGC1 and TGC2 SLA770758 NA 5 61 0 0 0 0.000277904, 0.0 10.3390/ijms25063331 NA NA t4081.T003051 4 Common GWAS TGC1 and TGC2 SLA811089 NA 5 61 0 0 0 0.003987706, 0.0 10.3390/ijms25063331 NA NA t4081.T003052 4 Common GWAS TGC1 and TGC2 SLA779463 NA 5 62 0 0 0 0.000584146, 0.0 10.3390/ijms25063331 NA NA t4081.T003053 4 Common GWAS TGC1 and TGC2 SLA814092 NA 6 30 0 0 0 0.007856098, 0.0 10.3390/ijms25063331 NA NA t4081.T003054 4 Common GWAS TGC1 and TGC2 SLA813371 NA 6 46 0 0 0 0.000146652, 0.0 10.3390/ijms25063331 NA NA t4081.T003055 4 Common GWAS TGC1 and TGC2 SLA769020 NA 6 46 0 0 0 0.001312413, 0.0 10.3390/ijms25063331 NA NA t4081.T003056 4 Common GWAS TGC1 and TGC2 SLA784773 NA 7 3 0 0 0 0.000822895, 0.0 10.3390/ijms25063331 NA NA t4081.T003057 4 Common GWAS TGC1 and TGC2 SLA810232 NA 7 63 0 0 0 0.007354131, 0.0 10.3390/ijms25063331 NA NA t4081.T003058 4 Common GWAS TGC1 and TGC2 SLA772140 NA 8 55 0 0 0 0.001149029, 1.9 10.3390/ijms25063331 NA NA t4081.T003059 4 Common GWAS TGC1 and TGC2 SLA812670 NA 8 59 0 0 0 0.007755668, 0.0 10.3390/ijms25063331 NA NA t4081.T003060 4 Common GWAS TGC1 and TGC2 SLA799131 NA 8 59 0 0 0 5.13542E06, 0.00 10.3390/ijms25063331 NA NA t4081.T003061 4 Common GWAS TGC1 and TGC2 SLA791857 NA 9 3 0 0 0 0.005576165, 0.0 10.3390/ijms25063331 NA NA t4081.T003062 4 Common GWAS TGC1 and TGC2 SLA790999 NA 9 4 0 0 0 0.004413987, 0.0 10.3390/ijms25063331 NA NA t4081.T003063 4 Common GWAS TGC1 and TGC2 SLA818736 NA 9 6 0 0 0 0.000688376, 0.0 10.3390/ijms25063331 NA NA t4081.T003064 4 Common GWAS TGC1 and TGC2 SLA815317 NA 9 7 0 0 0 0.001185799, 0.0 10.3390/ijms25063331 NA NA t4081.T003065 4 Common GWAS TGC1 and TGC2 SLA777284 NA 9 7 0 0 0 0.001965866, 0.0 10.3390/ijms25063331 NA NA t4081.T003066 4 Common GWAS TGC1 and TGC2 SLA818077 NA 9 7 0 0 0 0.0046585, 0.002 10.3390/ijms25063331 NA NA t4081.T003067 4 Common GWAS TGC1 and TGC2 SLA815004 NA 9 53 0 0 0 0.002815642, 0.0 10.3390/ijms25063331 NA NA t4081.T003068 4 Common GWAS TGC1 and TGC2 SLA817246 NA 9 63 0 0 0 0.003110649, 0.0 10.3390/ijms25063331 NA NA t4081.T003069 4 Common GWAS TGC1 and TGC2 SLA802180 NA 9 63 0 0 0 0.001153011, 0.0 10.3390/ijms25063331 NA NA t4081.T003070 4 Common GWAS TGC1 and TGC2 SLA811694 NA 9 63 0 0 0 0.003086269, 0.0 10.3390/ijms25063331 NA NA t4081.T003071 4 Common GWAS TGC1 and TGC2 SLA817469 NA 9 67 0 0 0 0.007870196, 0.0 10.3390/ijms25063331 NA NA t4081.T003072 4 Common GWAS TGC1 and TGC2 SLA793675 NA 10 5 0 0 0 0.004847286, 0.0 10.3390/ijms25063331 NA NA t4081.T003073 4 Common GWAS TGC1 and TGC2 SLA778459 NA 10 53 0 0 0 0.001618099, 0.0 10.3390/ijms25063331 NA NA t4081.T003074 4 Common GWAS TGC1 and TGC2 SLA814190 NA 10 53 0 0 0 0.001618099, 0.0 10.3390/ijms25063331 NA NA t4081.T003075 4 Common GWAS TGC1 and TGC2 SLA800819 NA 10 53 0 0 0 0.001560286, 0.0 10.3390/ijms25063331 NA NA t4081.T003076 4 Common GWAS TGC1 and TGC2 SLA795977 NA 10 53 0 0 0 0.002829835, 0.0 10.3390/ijms25063331 NA NA t4081.T003077 4 Common GWAS TGC1 and TGC2 SLA776392 NA 10 53 0 0 0 0.001618099, 0.0 10.3390/ijms25063331 NA NA t4081.T003078 4 Common GWAS TGC1 and TGC2 SLA782670 NA 10 53 0 0 0 0.000901298, 0.0 10.3390/ijms25063331 NA NA t4081.T003079 4 Common GWAS TGC1 and TGC2 SLA806235 NA 10 58 0 0 0 0.0015781, 0.000 10.3390/ijms25063331 NA NA t4081.T003080 4 Common GWAS TGC1 and TGC2 SLA769173 NA 10 58 0 0 0 0.003734658, 0.0 10.3390/ijms25063331 NA NA t4081.T003081 4 Common GWAS TGC1 and TGC2 SLA781295 NA 10 59 0 0 0 0.004700664, 0.0 10.3390/ijms25063331 NA NA t4081.T003082 4 Common GWAS TGC1 and TGC2 SLA803875 NA 10 59 0 0 0 0.004223648, 0.0 10.3390/ijms25063331 NA NA t4081.T003083 4 Common GWAS TGC1 and TGC2 SLA780223 NA 10 59 0 0 0 0.004682091, 0.0 10.3390/ijms25063331 NA NA t4081.T003084 4 Common GWAS TGC1 and TGC2 SLA794739 NA 10 63 0 0 0 0.001159429, 0.0 10.3390/ijms25063331 NA NA t4081.T003085 4 Common GWAS TGC1 and TGC2 SLA776583 NA 11 4 0 0 0 0.003835817, 0.0 10.3390/ijms25063331 NA NA t4081.T003086 4 Common GWAS TGC1 and TGC2 SLA788275 NA 11 51 0 0 0 0.000238313, 0.0 10.3390/ijms25063331 NA NA t4081.T003087 4 Common GWAS TGC1 and TGC2 SLA795671 NA 11 51 0 0 0 0.000237996, 0.0 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0.00083070903997 10.3390/ijms25063331 NA NA t4081.T003379 4 Fruit width GWAS TGC1 and TGC2 SLA806417 NA 7 62 0 0 0 0.00167217473585 10.3390/ijms25063331 NA NA t4081.T003380 4 Fruit width GWAS TGC1 and TGC2 SLA783890 NA 8 5 0 0 0 0.00218706231572 10.3390/ijms25063331 NA NA t4081.T003381 4 Fruit width GWAS TGC1 and TGC2 SLA785001 NA 8 38 0 0 0 0.00181196590777 10.3390/ijms25063331 NA NA t4081.T003382 4 Fruit width GWAS TGC1 and TGC2 SLA768834 NA 8 54 0 0 0 0.00288248420309 10.3390/ijms25063331 NA NA t4081.T003383 4 Fruit width GWAS TGC1 and TGC2 SLA791857 NA 9 3 0 0 0 0.00283225956101 10.3390/ijms25063331 NA NA t4081.T003384 4 Fruit width GWAS TGC1 and TGC2 SLA817469 NA 9 67 0 0 0 0.00096679963312 10.3390/ijms25063331 NA NA t4081.T003385 4 Fruit width GWAS TGC1 and TGC2 SLA769173 NA 10 58 0 0 0 0.00109369899755 10.3390/ijms25063331 NA NA t4081.T003386 4 Fruit width GWAS TGC1 and TGC2 SLA810923 NA 11 4 0 0 0 0.00292163998666 10.3390/ijms25063331 NA NA t4081.T003387 4 Fruit width GWAS TGC1 and TGC2 SLA782971 NA 11 4 0 0 0 0.00373652586484 10.3390/ijms25063331 NA NA t4081.T003388 4 Fruit width GWAS TGC1 and TGC2 SLA813110 NA 11 5 0 0 0 0.00340590604754 10.3390/ijms25063331 NA NA t4081.T003389 4 Fruit width GWAS TGC1 and TGC2 SLA807517 NA 11 52 0 0 0 0.00156057399731 10.3390/ijms25063331 NA NA t4081.T003390 4 Fruit width GWAS TGC1 and TGC2 SLA771270 NA 11 52 0 0 0 0.00086126837522 10.3390/ijms25063331 NA NA t4081.T003391 4 Fruit width GWAS TGC1 and TGC2 SLA789993 NA 11 52 0 0 0 0.00025718901513 10.3390/ijms25063331 NA NA t4081.T003392 4 Fruit width GWAS TGC1 and TGC2 SLA793724 NA 11 52 0 0 0 0.00306720492051 10.3390/ijms25063331 NA NA t4081.T003393 4 Fruit width GWAS TGC1 and TGC2 SLA808639 NA 11 52 0 0 0 1.67841015748698 10.3390/ijms25063331 NA NA t4081.T003394 4 Fruit width GWAS TGC1 and TGC2 SLA799502 NA 11 52 0 0 0 0.00103520291345 10.3390/ijms25063331 NA NA t4081.T003395 4 Fruit width GWAS TGC1 and TGC2 SLA789925 NA 11 52 0 0 0 0.00079143206151 10.3390/ijms25063331 NA NA t4081.T003396 4 Fruit width GWAS TGC1 and TGC2 SLA777155 NA 11 52 0 0 0 0.00022298107183 10.3390/ijms25063331 NA NA t4081.T003397 4 Fruit width GWAS TGC1 and TGC2 SLA814719 NA 12 2 0 0 0 0.00324174836127 10.3390/ijms25063331 NA NA t4081.T003398 4 Fruit width GWAS TGC1 and TGC2 SLA814924 NA 12 62 0 0 0 0.00111736821858 10.3390/ijms25063331 NA NA t4081.T003399 4 Fruit width GWAS TGC1 and TGC2 SLA816007 NA 12 62 0 0 0 0.00179543800871 10.3390/ijms25063331 NA NA t4081.T003400 4 Fruit width GWAS TGC1 and TGC2 SLA771475 NA 12 63 0 0 0 0.00030654746463 10.3390/ijms25063331 NA NA t4081.T003401 4 Fruit width GWAS TGC1 and TGC2 SLA771109 NA 12 63 0 0 0 0.00058121993788 10.3390/ijms25063331 NA NA t4081.T003402 4 Fruit width GWAS TGC1 and TGC2 SLA782937 NA 12 63 0 0 0 0.00101589776338 10.3390/ijms25063331 NA NA t4081.T003403 4 Fruit width GWAS TGC1 and TGC2 SLA815904 NA 12 63 0 0 0 0.00055691126217 10.3390/ijms25063331 NA NA t4081.T003404 4 Fruit width GWAS TGC1 and TGC2 SLA770600 NA 12 63 0 0 0 0.00050289878073 10.3390/ijms25063331 NA NA t4081.T003405 4 Fruit width GWAS TGC1 and TGC2 SLA814118 NA 12 63 0 0 0 0.00045166752789 10.3390/ijms25063331 NA NA t4081.T003406 4 Fruit width GWAS TGC1 and TGC2 SLA802673 NA 12 63 0 0 0 0.00276338943138 10.3390/ijms25063331 NA NA t4081.T003407 4 Pericarp thickness GWAS TGC1 and TGC2 SLA809518 NA 1 62 0 0 0 0.00202722160664 10.3390/ijms25063331 NA NA t4081.T003408 4 Pericarp thickness GWAS TGC1 and TGC2 SLA770256 NA 1 69 0 0 0 0.00155683030368 10.3390/ijms25063331 NA NA t4081.T003409 4 Pericarp thickness GWAS TGC1 and TGC2 SLA795714 NA 1 74 0 0 0 0.00044172188039 10.3390/ijms25063331 NA NA t4081.T003410 4 Pericarp thickness GWAS TGC1 and TGC2 SLA773268 NA 1 74 0 0 0 0.00233820689785 10.3390/ijms25063331 NA NA t4081.T003411 4 Pericarp thickness GWAS TGC1 and TGC2 SLA767844 NA 1 75 0 0 0 0.00151485413723 10.3390/ijms25063331 NA NA t4081.T003412 4 Pericarp thickness GWAS TGC1 and TGC2 SLA800166 NA 1 84 0 0 0 0.00258333453460 10.3390/ijms25063331 NA NA t4081.T003413 4 Pericarp thickness GWAS TGC1 and TGC2 SLA799196 NA 2 38 0 0 0 0.00230882992351 10.3390/ijms25063331 NA NA t4081.T003414 4 Pericarp thickness GWAS TGC1 and TGC2 SLA813138 NA 2 43 0 0 0 0.00256231591850 10.3390/ijms25063331 NA NA t4081.T003415 4 Pericarp thickness GWAS TGC1 and TGC2 SLA768326 NA 3 1 0 0 0 0.00015517403575 10.3390/ijms25063331 NA NA t4081.T003416 4 Pericarp thickness GWAS TGC1 and TGC2 SLA810926 NA 3 1 0 0 0 0.00296061649810 10.3390/ijms25063331 NA NA t4081.T003417 4 Pericarp thickness GWAS TGC1 and TGC2 SLA786894 NA 3 1 0 0 0 0.00232506751792 10.3390/ijms25063331 NA NA t4081.T003418 4 Pericarp thickness GWAS TGC1 and TGC2 SLA815255 NA 3 1 0 0 0 0.00232506751792 10.3390/ijms25063331 NA NA t4081.T003419 4 Pericarp thickness GWAS TGC1 and TGC2 SLA797625 NA 3 1 0 0 0 0.00232506751792 10.3390/ijms25063331 NA NA t4081.T003420 4 Pericarp thickness GWAS TGC1 and TGC2 SLA798358 NA 3 1 0 0 0 0.00165628168295 10.3390/ijms25063331 NA NA t4081.T003421 4 Pericarp thickness GWAS TGC1 and TGC2 SLA793576 NA 3 1 0 0 0 0.00179691053450 10.3390/ijms25063331 NA NA t4081.T003422 4 Pericarp thickness GWAS TGC1 and TGC2 SLA787878 NA 3 1 0 0 0 0.00179691053450 10.3390/ijms25063331 NA NA t4081.T003423 4 Pericarp thickness GWAS TGC1 and TGC2 SLA773824 NA 3 1 0 0 0 0.00179691053450 10.3390/ijms25063331 NA NA t4081.T003424 4 Pericarp thickness GWAS TGC1 and TGC2 SLA812022 NA 3 1 0 0 0 0.00179691053450 10.3390/ijms25063331 NA NA t4081.T003425 4 Pericarp thickness GWAS TGC1 and TGC2 SLA768043 NA 3 1 0 0 0 0.00138504271835 10.3390/ijms25063331 NA NA t4081.T003426 4 Pericarp thickness GWAS TGC1 and TGC2 SLA773298 NA 3 1 0 0 0 0.00253039561194 10.3390/ijms25063331 NA NA t4081.T003427 4 Pericarp thickness GWAS TGC1 and TGC2 SLA788854 NA 3 1 0 0 0 0.00073989103066 10.3390/ijms25063331 NA NA t4081.T003428 4 Pericarp thickness GWAS TGC1 and TGC2 SLA784910 NA 3 1 0 0 0 0.00182214019326 10.3390/ijms25063331 NA NA t4081.T003429 4 Pericarp thickness GWAS TGC1 and TGC2 SLA807068 NA 3 1 0 0 0 0.00182214019326 10.3390/ijms25063331 NA NA t4081.T003430 4 Pericarp thickness GWAS TGC1 and TGC2 SLA818447 NA 3 1 0 0 0 0.00155954974148 10.3390/ijms25063331 NA NA t4081.T003431 4 Pericarp thickness GWAS TGC1 and TGC2 SLA791203 NA 3 1 0 0 0 0.00182214019326 10.3390/ijms25063331 NA NA t4081.T003432 4 Pericarp thickness GWAS TGC1 and TGC2 SLA778140 NA 3 1 0 0 0 0.00322371571458 10.3390/ijms25063331 NA NA t4081.T003433 4 Pericarp thickness GWAS TGC1 and TGC2 SLA805999 NA 3 1 0 0 0 0.00032948764074 10.3390/ijms25063331 NA NA t4081.T003434 4 Pericarp thickness GWAS TGC1 and TGC2 SLA800006 NA 3 51 0 0 0 0.00190101848162 10.3390/ijms25063331 NA NA t4081.T003435 4 Pericarp thickness GWAS TGC1 and TGC2 SLA770547 NA 3 62 0 0 0 0.00311043656261 10.3390/ijms25063331 NA NA t4081.T003436 4 Pericarp thickness GWAS TGC1 and TGC2 SLA787255 NA 4 3 0 0 0 0.00067477461503 10.3390/ijms25063331 NA NA t4081.T003437 4 Pericarp thickness GWAS TGC1 and TGC2 SLA798303 NA 4 3 0 0 0 0.00076457454020 10.3390/ijms25063331 NA NA t4081.T003438 4 Pericarp thickness GWAS TGC1 and TGC2 SLA785699 NA 4 4 0 0 0 0.00292460318412 10.3390/ijms25063331 NA NA t4081.T003439 4 Pericarp thickness GWAS TGC1 and TGC2 SLA775355 NA 4 6 0 0 0 0.00036038491969 10.3390/ijms25063331 NA NA t4081.T003440 4 Pericarp thickness GWAS TGC1 and TGC2 SLA796219 NA 4 59 0 0 0 0.00012512266590 10.3390/ijms25063331 NA NA t4081.T003441 4 Pericarp thickness GWAS TGC1 and TGC2 SLA777311 NA 4 59 0 0 0 1.05490567253587 10.3390/ijms25063331 NA NA t4081.T003442 4 Pericarp thickness GWAS TGC1 and TGC2 SLA818431 NA 4 59 0 0 0 0.00142034472845 10.3390/ijms25063331 NA NA t4081.T003443 4 Pericarp thickness GWAS TGC1 and TGC2 SLA813757 NA 4 59 0 0 0 0.00168092263490 10.3390/ijms25063331 NA NA t4081.T003444 4 Pericarp thickness GWAS TGC1 and TGC2 SLA789319 NA 5 4 0 0 0 0.00263115266315 10.3390/ijms25063331 NA NA t4081.T003445 4 Pericarp thickness GWAS TGC1 and TGC2 SLA811030 NA 5 61 0 0 0 0.00308393185644 10.3390/ijms25063331 NA NA t4081.T003446 4 Pericarp thickness GWAS TGC1 and TGC2 SLA811089 NA 5 61 0 0 0 0.00253609419315 10.3390/ijms25063331 NA NA t4081.T003447 4 Pericarp thickness GWAS TGC1 and TGC2 SLA774825 NA 6 1 0 0 0 0.00106307430917 10.3390/ijms25063331 NA NA t4081.T003448 4 Pericarp thickness GWAS TGC1 and TGC2 SLA785007 NA 6 30 0 0 0 0.00230406778586 10.3390/ijms25063331 NA NA t4081.T003449 4 Pericarp thickness GWAS TGC1 and TGC2 SLA814092 NA 6 30 0 0 0 0.00304658589675 10.3390/ijms25063331 NA NA t4081.T003450 4 Pericarp thickness GWAS TGC1 and TGC2 SLA787561 NA 6 30 0 0 0 0.00233343802843 10.3390/ijms25063331 NA NA t4081.T003451 4 Pericarp thickness GWAS TGC1 and TGC2 SLA810429 NA 6 37 0 0 0 0.00262189569625 10.3390/ijms25063331 NA NA t4081.T003452 4 Pericarp thickness GWAS TGC1 and TGC2 SLA810391 NA 6 37 0 0 0 0.00262189569625 10.3390/ijms25063331 NA NA t4081.T003453 4 Pericarp thickness GWAS TGC1 and TGC2 SLA814793 NA 6 37 0 0 0 0.00232470962844 10.3390/ijms25063331 NA NA t4081.T003454 4 Pericarp thickness GWAS TGC1 and TGC2 SLA783493 NA 7 62 0 0 0 0.00043851587284 10.3390/ijms25063331 NA NA t4081.T003455 4 Pericarp thickness GWAS TGC1 and TGC2 SLA801303 NA 8 53 0 0 0 0.00186263652692 10.3390/ijms25063331 NA NA t4081.T003456 4 Pericarp thickness GWAS TGC1 and TGC2 SLA786915 NA 8 54 0 0 0 0.00115244003360 10.3390/ijms25063331 NA NA t4081.T003457 4 Pericarp thickness GWAS TGC1 and TGC2 SLA806895 NA 8 55 0 0 0 0.00275226770521 10.3390/ijms25063331 NA NA t4081.T003458 4 Pericarp thickness GWAS TGC1 and TGC2 SLA812670 NA 8 59 0 0 0 0.00164781415030 10.3390/ijms25063331 NA NA t4081.T003459 4 Pericarp thickness GWAS TGC1 and TGC2 SLA785975 NA 9 1 0 0 0 5.16794027566898 10.3390/ijms25063331 NA NA t4081.T003460 4 Pericarp thickness GWAS TGC1 and TGC2 SLA771594 NA 9 1 0 0 0 5.16794027566898 10.3390/ijms25063331 NA NA t4081.T003461 4 Pericarp thickness GWAS TGC1 and TGC2 SLA796357 NA 9 1 0 0 0 0.00023414988287 10.3390/ijms25063331 NA NA t4081.T003462 4 Pericarp thickness GWAS TGC1 and TGC2 SLA777282 NA 9 1 0 0 0 5.16794027566898 10.3390/ijms25063331 NA NA t4081.T003463 4 Pericarp thickness GWAS TGC1 and TGC2 SLA782236 NA 9 1 0 0 0 5.16794027566898 10.3390/ijms25063331 NA NA t4081.T003464 4 Pericarp thickness GWAS TGC1 and TGC2 SLA785564 NA 9 1 0 0 0 0.00142643176013 10.3390/ijms25063331 NA NA t4081.T003465 4 Pericarp thickness GWAS TGC1 and TGC2 SLA803859 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T003466 4 Pericarp thickness GWAS TGC1 and TGC2 SLA810813 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T003467 4 Pericarp thickness GWAS TGC1 and TGC2 SLA801460 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T003468 4 Pericarp thickness GWAS TGC1 and TGC2 SLA804038 NA 9 1 0 0 0 0.00038397767445 10.3390/ijms25063331 NA NA t4081.T003469 4 Pericarp thickness GWAS TGC1 and TGC2 SLA781525 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T003470 4 Pericarp thickness GWAS TGC1 and TGC2 SLA773718 NA 9 1 0 0 0 0.00038397767445 10.3390/ijms25063331 NA NA t4081.T003471 4 Pericarp thickness GWAS TGC1 and TGC2 SLA784089 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T003472 4 Pericarp thickness GWAS TGC1 and TGC2 SLA788740 NA 9 1 0 0 0 0.00017047872669 10.3390/ijms25063331 NA NA t4081.T003473 4 Pericarp thickness GWAS TGC1 and TGC2 SLA780292 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T003474 4 Pericarp thickness GWAS TGC1 and TGC2 SLA772402 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T003475 4 Pericarp thickness GWAS TGC1 and TGC2 SLA804287 NA 9 1 0 0 0 0.00038397767445 10.3390/ijms25063331 NA NA t4081.T003476 4 Pericarp thickness GWAS TGC1 and TGC2 SLA780556 NA 9 1 0 0 0 0.00038397767445 10.3390/ijms25063331 NA NA t4081.T003477 4 Pericarp thickness GWAS TGC1 and TGC2 SLA807744 NA 9 1 0 0 0 0.00038397767445 10.3390/ijms25063331 NA NA t4081.T003478 4 Pericarp thickness GWAS TGC1 and TGC2 SLA788011 NA 9 1 0 0 0 0.00039269694306 10.3390/ijms25063331 NA NA t4081.T003479 4 Pericarp thickness GWAS TGC1 and TGC2 SLA800498 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T003480 4 Pericarp thickness GWAS TGC1 and TGC2 SLA803097 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T003481 4 Pericarp thickness GWAS TGC1 and TGC2 SLA796300 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T003482 4 Pericarp thickness GWAS TGC1 and TGC2 SLA811264 NA 9 1 0 0 0 8.65863826144253 10.3390/ijms25063331 NA NA t4081.T003483 4 Pericarp thickness GWAS TGC1 and TGC2 SLA799199 NA 9 2 0 0 0 0.00315064183769 10.3390/ijms25063331 NA NA t4081.T003484 4 Pericarp thickness GWAS TGC1 and TGC2 SLA789064 NA 9 2 0 0 0 0.00194935138221 10.3390/ijms25063331 NA NA t4081.T003485 4 Pericarp thickness GWAS TGC1 and TGC2 SLA777551 NA 9 3 0 0 0 0.00035025985381 10.3390/ijms25063331 NA NA t4081.T003486 4 Pericarp thickness GWAS TGC1 and TGC2 SLA784222 NA 9 7 0 0 0 0.00196302516071 10.3390/ijms25063331 NA NA t4081.T003487 4 Pericarp thickness GWAS TGC1 and TGC2 SLA818077 NA 9 7 0 0 0 0.00245701623158 10.3390/ijms25063331 NA NA t4081.T003488 4 Pericarp thickness GWAS TGC1 and TGC2 SLA815592 NA 9 67 0 0 0 0.00182758298953 10.3390/ijms25063331 NA NA t4081.T003489 4 Pericarp thickness GWAS TGC1 and TGC2 SLA818443 NA 11 48 0 0 0 0.00262481370668 10.3390/ijms25063331 NA NA t4081.T003490 4 Pericarp thickness GWAS TGC1 and TGC2 SLA783517 NA 12 4 0 0 0 0.00274042828721 10.3390/ijms25063331 NA NA t4081.T003491 4 Pericarp thickness GWAS TGC1 and TGC2 SLA777436 NA 12 62 0 0 0 0.00313097392323 10.3390/ijms25063331 NA NA t4081.T003492 4 Pericarp thickness GWAS TGC1 and TGC2 SLA787924 NA 12 65 0 0 0 0.00092467511242 10.3390/ijms25063331 NA NA t4081.T003493 4 Common GWAS TGC1 and TGC2 SLA808842 NA 1 0 0 0 0 .002397916, 0.00 10.3390/ijms25063331 NA NA t4081.T003494 4 Common GWAS TGC1 and TGC2 SLA786207 NA 1 5 0 0 0 0.000645432, 0.0 10.3390/ijms25063331 NA NA t4081.T003495 4 Common GWAS TGC1 and TGC2 SLA785484 NA 1 43 0 0 0 0.000313249, 0.0 10.3390/ijms25063331 NA NA t4081.T003496 4 Common GWAS TGC1 and TGC2 SLA773077 NA 1 65 0 0 0 0.001401981, 0.0 10.3390/ijms25063331 NA NA t4081.T003497 4 Common GWAS TGC1 and TGC2 SLA781717 NA 1 75 0 0 0 0.00041807, 0.00 10.3390/ijms25063331 NA NA t4081.T003498 4 Common GWAS TGC1 and TGC2 SLA802093 NA 1 77 0 0 0 4.5651E-12, 3.58 10.3390/ijms25063331 NA NA t4081.T003499 4 Common GWAS TGC1 and TGC2 SLA794583 NA 1 77 0 0 0 0.001843267, 0.0 10.3390/ijms25063331 NA NA t4081.T003500 4 Common GWAS TGC1 and TGC2 SLA792985 NA 1 84 0 0 0 0.002062081, 0.0 10.3390/ijms25063331 NA NA t4081.T003501 4 Common GWAS TGC1 and TGC2 SLA792955 NA 1 86 0 0 0 0.001548535, 0.0 10.3390/ijms25063331 NA NA t4081.T003502 4 Common GWAS TGC1 and TGC2 SLA804243 NA 1 86 0 0 0 0.001548535, 0.0 10.3390/ijms25063331 NA NA t4081.T003503 4 Common GWAS TGC1 and TGC2 SLA806757 NA 2 32 0 0 0 0.001253864, 0.0 10.3390/ijms25063331 NA NA t4081.T003504 4 Common GWAS TGC1 and TGC2 SLA790460 NA 2 32 0 0 0 0.002327223, 0.0 10.3390/ijms25063331 NA NA t4081.T003505 4 Common GWAS TGC1 and TGC2 SLA800925 NA 2 32 0 0 0 0.001742457, 0.0 10.3390/ijms25063331 NA NA t4081.T003506 4 Common GWAS TGC1 and TGC2 SLA814365 NA 2 32 0 0 0 1.35784E-05, 0.0 10.3390/ijms25063331 NA NA t4081.T003507 4 Common GWAS TGC1 and TGC2 SLA778779 NA 2 40 0 0 0 0.000219197, 0.0 10.3390/ijms25063331 NA NA t4081.T003508 4 Common GWAS TGC1 and TGC2 SLA796841 NA 2 42 0 0 0 0.000220757, 2.1 10.3390/ijms25063331 NA NA t4081.T003509 4 Common GWAS TGC1 and TGC2 SLA799763 NA 2 48 0 0 0 2.9699E-05, 6.31 10.3390/ijms25063331 NA NA t4081.T003510 4 Common GWAS TGC1 and TGC2 SLA814562 NA 3 60 0 0 0 0.002844144, 0.0 10.3390/ijms25063331 NA NA t4081.T003511 4 Common GWAS TGC1 and TGC2 SLA812598 NA 4 0 0 0 0 0.001360397, 0.0 10.3390/ijms25063331 NA NA t4081.T003512 4 Common GWAS TGC1 and TGC2 SLA798726 NA 4 2 0 0 0 0.002893704, 0.0 10.3390/ijms25063331 NA NA t4081.T003513 4 Common GWAS TGC1 and TGC2 SLA782251 NA 4 3 0 0 0 0.003264161, 0.0 10.3390/ijms25063331 NA NA t4081.T003514 4 Common GWAS TGC1 and TGC2 SLA782011 NA 5 3 0 0 0 0.002211716, 0.0 10.3390/ijms25063331 NA NA t4081.T003515 4 Common GWAS TGC1 and TGC2 SLA779053 NA 5 8 0 0 0 0.00143182, 0.00 10.3390/ijms25063331 NA NA t4081.T003516 4 Common GWAS TGC1 and TGC2 SLA770758 NA 5 61 0 0 0 0.000277904, 0.0 10.3390/ijms25063331 NA NA t4081.T003517 4 Common GWAS TGC1 and TGC2 SLA779463 NA 5 62 0 0 0 0.000584146, 0.0 10.3390/ijms25063331 NA NA t4081.T003518 4 Common GWAS TGC1 and TGC2 SLA813371 NA 6 46 0 0 0 0.000146652, 0.0 10.3390/ijms25063331 NA NA t4081.T003519 4 Common GWAS TGC1 and TGC2 SLA769020 NA 6 46 0 0 0 0.001312413, 0.0 10.3390/ijms25063331 NA NA t4081.T003520 4 Common GWAS TGC1 and TGC2 SLA784773 NA 7 3 0 0 0 0.000822895, 0.0 10.3390/ijms25063331 NA NA t4081.T003521 4 Common GWAS TGC1 and TGC2 SLA772140 NA 8 55 0 0 0 0.001149029, 1.9 10.3390/ijms25063331 NA NA t4081.T003522 4 Common GWAS TGC1 and TGC2 SLA818736 NA 9 6 0 0 0 0.000688376, 0.0 10.3390/ijms25063331 NA NA t4081.T003523 4 Common GWAS TGC1 and TGC2 SLA815317 NA 9 7 0 0 0 0.001185799, 0.0 10.3390/ijms25063331 NA NA t4081.T003524 4 Common GWAS TGC1 and TGC2 SLA777284 NA 9 7 0 0 0 0.001965866, 0.0 10.3390/ijms25063331 NA NA t4081.T003525 4 Common GWAS TGC1 and TGC2 SLA817246 NA 9 63 0 0 0 0.003110649, 0.0 10.3390/ijms25063331 NA NA t4081.T003526 4 Common GWAS TGC1 and TGC2 SLA802180 NA 9 63 0 0 0 0.001153011, 0.0 10.3390/ijms25063331 NA NA t4081.T003527 4 Common GWAS TGC1 and TGC2 SLA806235 NA 10 58 0 0 0 0.0015781, 0.000 10.3390/ijms25063331 NA NA t4081.T003528 4 Common GWAS TGC1 and TGC2 SLA788275 NA 11 51 0 0 0 0.000238313, 0.0 10.3390/ijms25063331 NA NA t4081.T003529 4 Common GWAS TGC1 and TGC2 SLA800773 NA 11 52 0 0 0 0.002815461, 0.0 10.3390/ijms25063331 NA NA t4081.T003530 4 Common GWAS TGC1 and TGC2 SLA787434 NA 11 52 0 0 0 4.29056E-05, 5.5 10.3390/ijms25063331 NA NA t4081.T003531 4 Common GWAS TGC1 and TGC2 SLA814782 NA 12 2 0 0 0 0.003814917, 0.0 10.3390/ijms25063331 NA NA t4081.T003532 4 Common GWAS TGC1 and TGC2 SLA810629 NA 12 2 0 0 0 0.003513, 0.0005 10.3390/ijms25063331 NA NA t4081.T003533 4 Common GWAS TGC1 and TGC2 SLA806380 NA 12 2 0 0 0 0.003825963, 0.0 10.3390/ijms25063331 NA NA t4081.T003534 4 Common GWAS TGC1 and TGC2 SLA802261 NA 12 2 0 0 0 0.004022346, 0.0 10.3390/ijms25063331 NA NA t4081.T003535 4 Common GWAS TGC1 and TGC2 SLA810329 NA 12 2 0 0 0 0.001390265, 0.0 10.3390/ijms25063331 NA NA t4081.T003536 4 Common GWAS TGC1 and TGC2 SLA773773 NA 12 2 0 0 0 0.003828647, 0.0 10.3390/ijms25063331 NA NA t4081.T003537 4 Common GWAS TGC1 and TGC2 SLA773515 NA 12 2 0 0 0 0.002946778, 0.0 10.3390/ijms25063331 NA NA t4081.T003538 4 Common GWAS TGC1 and TGC2 SLA799047 NA 12 2 0 0 0 0.001572814, 0.0 10.3390/ijms25063331 NA NA t4081.T003539 4 Common GWAS TGC1 and TGC2 SLA779595 NA 12 2 0 0 0 0.002290803, 0.0 10.3390/ijms25063331 NA NA t4081.T003540 4 Common GWAS TGC1 and TGC2 SLA798907 NA 12 2 0 0 0 0.001981051, 0.0 10.3390/ijms25063331 NA NA t4081.T003541 4 Common GWAS TGC1 and TGC2 SLA810094 NA 12 2 0 0 0 0.002290803, 0.0 10.3390/ijms25063331 NA NA t4081.T003542 4 Common GWAS TGC1 and TGC2 SLA768068 NA 12 2 0 0 0 0.002290803, 0.0 10.3390/ijms25063331 NA NA t4081.T003543 4 Common GWAS TGC1 and TGC2 SLA769875 NA 12 2 0 0 0 0.003501324, 0.0 10.3390/ijms25063331 NA NA t4081.T003544 4 Common GWAS TGC1 and TGC2 SLA818143 NA 12 2 0 0 0 0.000552021, 0.0 10.3390/ijms25063331 NA NA t4081.T003545 4 Common GWAS TGC1 and TGC2 SLA774563 NA 12 62 0 0 0 0.000681455, 0.0 10.3390/ijms25063331 NA NA t4081.T003546 4 Common GWAS TGC1 and TGC2 SLA790695 NA 12 62 0 0 0 0.001371761, 0.0 10.3390/ijms25063331 NA NA t4081.T003547 4 Common GWAS TGC1 and TGC2 SLA814643 NA 12 62 0 0 0 0.000846495, 0.0 10.3390/ijms25063331 NA NA t4081.T003548 5 Proline content GWAS 50 genotypes CH08_9484802 NA chr8 9484802 0 0 0 8.75*10−6 10.1186/s12870-024-04934-8 NA NA t4081.T003549 5 Proline content GWAS 50 genotypes CH08_9484810 NA chr8 9484810 0 0 0 8.75*10−6 10.1186/s12870-024-04934-8 NA NA t4081.T003550 5 Proline content GWAS 50 genotypes CH08_9528421 NA chr8 9528421 0 0 0 7.65*10−5 10.1186/s12870-024-04934-8 NA NA t4081.T003551 4 No of fruits per plant GWAS 50 genotypes CH12_49436823 NA chr12 49436823 0 0 0 4.18*10−5 10.1186/s12870-024-04934-8 NA NA t4081.T003552 4 No of fruits per plant GWAS 50 genotypes CH12_49436823 NA chr12 49436823 0 0 0 1.11*10−4 10.1186/s12870-024-04934-8 NA NA t4081.T003553 4 No of fruits per plant GWAS 50 genotypes CH12_49436823 NA chr12 49436823 0 0 0 8.19*10−4 10.1186/s12870-024-04934-8 NA NA t4081.T003554 4 No of days to first fruit set GWAS 50 genotypes CH09_32796951 NA chr9 32796951 0 0 0 2.4721*10−4 10.1186/s12870-024-04934-8 NA NA t4081.T003555 4 No of days to first fruit set GWAS 50 genotypes CH11_13438935 NA chr11 13438935 0 0 0 7.27*10−4 10.1186/s12870-024-04934-8 NA NA t4081.T003556 4 Fruit shape index GWAS 50 genotypes CH08_9435068 NA chr8 9435068 0 0 0 8.31*10−7 10.1186/s12870-024-04934-8 NA NA t4081.T003557 4 Fruit shape index GWAS 50 genotypes CH08_9452288 NA chr8 9452288 0 0 0 1.75*10−5 10.1186/s12870-024-04934-8 NA NA t4081.T003558 4 Fruit shape index GWAS 50 genotypes CH08_9452289 NA chr8 9452289 0 0 0 1.75*10−5 10.1186/s12870-024-04934-8 NA NA t4081.T003559 4 Fruit shape index GWAS 50 genotypes CH08_9454260 NA chr8 9454260 0 0 0 2.31*10−5 10.1186/s12870-024-04934-8 NA NA t4081.T003560 4 Fruit shape index GWAS 50 genotypes CH08_9454275 NA chr8 9454275 0 0 0 2.31*10−5 10.1186/s12870-024-04934-8 NA NA t4081.T003561 4 Lobedness degree QTL-seq Voyage x Old Brooks F2 NA 4 0 0 4 4 0 10.1016/j.plantsci.2022.111258 NA NA t4081.T003562 4 Lobedness degree QTL-seq Voyage x Old Brooks F2 NA 6 33 0 6 47 0 10.1016/j.plantsci.2022.111258 NA NA t4081.T003563 4 Lobedness degree QTL-seq Voyage x Old Brooks F2 NA 6 1 0 6 58 0 10.1016/j.plantsci.2022.111258 NA NA t4081.T003564 4 Lobedness degree QTL-seq Voyage x Old Brooks F2 NA 9 3 0 9 66 0 10.1016/j.plantsci.2022.111258 NA NA t4081.T003565 4 Lobedness degree QTL-seq Voyage x Old Brooks F2 NA 11 48 0 11 52 0 10.1016/j.plantsci.2022.111258 NA NA t4081.T003566 4 Lobedness degree QTL-seq Yellow Stuffer x Heinz 1439 F2 NA 8 8 0 8 9 0 10.1016/j.plantsci.2022.111258 NA NA t4081.T003567 4 Lobedness degree QTL-seq Yellow Stuffer x Heinz 1439 F2 NA 8 11 0 8 15 0 10.1016/j.plantsci.2022.111258 NA NA t4081.T003568 4 Lobedness degree QTL-seq Yellow Stuffer x Heinz 1439 F2 NA 8 23 0 8 30 0 10.1016/j.plantsci.2022.111258 NA NA t4081.T003569 4 Lobedness degree QTL-seq Yellow Stuffer x Heinz 1439 F2 NA 8 35 0 8 43 0 10.1016/j.plantsci.2022.111258 NA NA t4081.T003570 4 Lobedness degree QTL-seq Yellow Stuffer x Heinz 1439 F2 NA 8 51 0 8 55 0 10.1016/j.plantsci.2022.111258 NA NA t4081.T003571 4 Fruit shape Single-point analysis Voyage x Old Brooks F2 PTZ-93 NA 0 0 0 0 0.97 0.56, 0.43, 0.83 10.1016/j.plantsci.2022.111258 NA NA t4081.T003572 4 Fruit shape Single-point analysis Voyage x Old Brooks F2 PTZ-97 NA 0 0 0 0 62.53 0.74, 0.87, 0.45 10.1016/j.plantsci.2022.111258 NA NA t4081.T003573 4 Fruit shape Single-point analysis Voyage x Old Brooks F2 PTZ-12 NA 0 0 0 0 40.98 0.28, 0.02, 0.4, 10.1016/j.plantsci.2022.111258 NA NA t4081.T003574 4 Fruit shape Single-point analysis Voyage x Old Brooks F2 PTZ-17 NA 0 0 0 0 0.96 0.18, 0.15, 0.11 10.1016/j.plantsci.2022.111258 NA NA t4081.T003575 4 Fruit shape Single-point analysis Voyage x Old Brooks F2 PTZ-99 NA 0 0 0 0 12.78 0.26, 0.94, 0.17 10.1016/j.plantsci.2022.111258 NA NA t4081.T003576 4 Fruit shape Single-point analysis Voyage x Old Brooks F2 PTZ-101 NA 0 0 0 0 65.08 0.32, 0.54, 0.49 10.1016/j.plantsci.2022.111258 NA NA t4081.T003577 4 Fruit shape Single-point analysis Voyage x Old Brooks F2 PTZ-103 NA 0 0 0 0 53.26 <0.0001, <0.0001 10.1016/j.plantsci.2022.111258 NA NA t4081.T003578 1 Early blight resistance Composite interval mapping NC 1CELBR × Fla. 7775 F2:3 NA 0 0 0 0 20.01 4.17 10.3389/fpls.2023.1135884 NA NA t4081.T003579 1 Early blight resistance Composite interval mapping NC 1CELBR × Fla. 7775 F2:3 NA 0 0 0 0 51.31 4.18 10.3389/fpls.2023.1135884 NA NA t4081.T003580 1 Early blight resistance Composite interval mapping NC 1CELBR × Fla. 7775 F2:3 NA 0 0 0 0 50.91 4.03 10.3389/fpls.2023.1135884 NA NA t4081.T003581 1 Early blight resistance Composite interval mapping NC 1CELBR × Fla. 7775 F2:3 NA 0 0 0 0 16.61 5.02 10.3389/fpls.2023.1135884 NA NA t4081.T003582 1 Early blight resistance Composite interval mapping NC 1CELBR × Fla. 7775 F2:3 NA 0 0 0 0 32.41 5.24 10.3389/fpls.2023.1135884 NA NA t4081.T003583 1 Early blight resistance Composite interval mapping NC 1CELBR × Fla. 7775 F2:3 NA 0 0 0 0 44.12 9.11 10.3389/fpls.2023.1135884 NA NA t4081.T003584 4 Fruit weight QTL-seq HGL × RG F2 LC NA 0 0 0 0 5.76842856509985 10.3390/plants12112065 NA NA t4081.T003585 4 Fruit weight QTL-seq HGL × RG F2 HMT NA 0 0 0 0 6.77516939874709 10.3390/plants12112065 NA NA t4081.T003586 4 Fruit weight QTL-seq HGL × RG F2 HP875 NA 0 0 0 0 0.02573434082816 10.3390/plants12112065 NA NA t4081.T003587 4 Fruit weight QTL-seq HGL × RG F2 HP1113 NA 0 0 0 0 1.44692916752011 10.3390/plants12112065 NA NA t4081.T003588 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 89.578 - 127.042 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003589 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 127.042 - 0 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003590 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 121.029 - 15.981 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003591 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 16.291 - 80.55 0.001 10.1073/pnas.2205787119 NA NA t4081.T003592 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 0.323 - 31.735 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003593 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 39.948 - 67.131 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003594 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 83.406 - 80.55 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003595 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 57.236 - 79.59 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003596 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 80.55 - 15.981 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003597 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 0 - 2.956 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003598 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 30.558 - 15.253 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003599 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 80.55 - 18.933 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003600 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 27.193 - 2.655 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003601 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 13.622 - 60.118 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003602 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 0 - 54.689 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003603 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 15.981 - 54.689 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003604 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 26.736 - 60.118 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003605 4 Plant weight (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 49.808 - 54.689 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003606 4 Fruit weight (gr) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 39.339 - 37.879 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003607 4 Fruit weight (gr) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 39.339 - 52.374 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003608 4 Fruit weight (gr) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 72.401 - 37.803 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003609 4 Fruit weight (gr) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 68.515 - 35.608 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003610 4 Fruit weight (gr) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 55.708 - 77.434 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003611 4 Fruit weight (gr) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 37.803 - 33.426 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003612 4 Fruit weight (gr) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 72.401 - 52.374 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003613 4 Fruit weight (gr) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 136.347 - 54.907 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003614 4 Fruit weight (gr) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 37.803 - 52.374 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003615 4 Fruit weight (gr) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 35.608 - 53.931 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003616 4 Fruit weight (gr) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 66.853 - 87.021 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003617 4 Fruit weight (gr) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 37.803 - 101.921 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003618 4 Fruit weight (gr) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 37.106 - 87.021 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003619 4 Fruit weight (gr) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 37.106 - 58.629 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003620 5 Brix (%) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 13.004 - 38.56 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003621 5 Brix (%) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 116.214 - 132.214 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003622 5 Brix (%) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 54.907 - 80.496 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003623 5 Brix (%) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 52.855 - 77.412 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003624 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 113.83 - 117.058 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003625 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 126.681 - 30.564 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003626 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 38.004 - 80.55 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003627 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 79.59 - 30.564 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003628 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 79.59 - 32.601 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003629 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 30.564 - 35.532 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003630 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 35.532 - 153.315 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003631 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 32.601 - 18.171 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003632 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 13.041 - 54.907 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003633 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 18.171 - 58.877 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003634 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 3.906 - 82.649 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003635 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 36.508 - 58.877 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003636 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 79.59 - 12.383 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003637 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 30.564 - 58.877 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003638 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 35.532 - 83.112 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003639 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 12.383 - 69.245 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003640 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 30.564 - 57.066 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003641 3 Total yield (kg) QTL mapping LA5240 × LEA BILs NA 0 0 0 0 35.532 - 52.74 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003642 4 Plant weight (kg) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 9.573 - 9.549 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003643 4 Plant weight (kg) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 70.75 - 80.55 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003644 4 Plant weight (kg) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 2.09 - 90.576 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003645 4 Fruit weight (gr) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 35.706 - 181.868 0.0006 10.1073/pnas.2205787119 NA NA t4081.T003646 5 Brix (%) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 76.651 - 83.791 0.001 10.1073/pnas.2205787119 NA NA t4081.T003647 5 Brix (%) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 82.538 - 12.651 0.0004 10.1073/pnas.2205787119 NA NA t4081.T003648 5 Brix (%) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 39.339 - 105.562 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003649 5 Brix (%) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 19.349 - 71.874 0.0002 10.1073/pnas.2205787119 NA NA t4081.T003650 5 Brix (%) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 19.782 - 67.131 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003651 5 Brix (%) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 60.491 - 80.55 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003652 5 Brix (%) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 60.491 - 97.359 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003653 5 Brix (%) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 37.459 - 80.992 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003654 5 Brix (%) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 80.55 - 64.421 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003655 5 Brix (%) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 105.562 - 162.84 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003656 5 Brix (%) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 19.349 - 25.457 0.0055 10.1073/pnas.2205787119 NA NA t4081.T003657 5 Brix (%) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 125.801 - 20.067 0.0514 10.1073/pnas.2205787119 NA NA t4081.T003658 5 Brix (%) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 80.55 - 52.686 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003659 5 Brix (%) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 105.562 - 18.171 0.0002 10.1073/pnas.2205787119 NA NA t4081.T003660 5 Brix (%) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 78.121 - 82.03 0.001 10.1073/pnas.2205787119 NA NA t4081.T003661 5 Brix (%) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 79.404 - 81.247 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003662 3 Total yield (kg) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 114.409 - 50.702 0.0001 10.1073/pnas.2205787119 NA NA t4081.T003663 3 Total yield (kg) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 3.682 - 121.087 0.001 10.1073/pnas.2205787119 NA NA t4081.T003664 3 Total yield (kg) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 121.087 - 15.981 0.001 10.1073/pnas.2205787119 NA NA t4081.T003665 3 Total yield (kg) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 125.727 - 16.173 0.0039 10.1073/pnas.2205787119 NA NA t4081.T003666 3 Total yield (kg) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 80.55 - 3.712 0.001 10.1073/pnas.2205787119 NA NA t4081.T003667 3 Total yield (kg) QTL mapping LA5240 × LEA BILH NA 0 0 0 0 138.02 - 4.92 0.001 10.1073/pnas.2205787119 NA NA t4081.T003668 1 Bacterial canker resistance Physical mapping TG59 NA T01 77441598 0 T01 77441170 0 10.3390/cimb45020090 NA NA t4081.T003669 1 Bacterial canker resistance Physical mapping TG165 NA T02 35820075 0 T02 35819595 0 10.3390/cimb45020090 NA NA t4081.T003670 1 Bacterial canker resistance Physical mapping TG353-TG34 NA T02 42997178 0 T02 49197691 0 10.3390/cimb45020090 NA NA t4081.T003671 1 Bacterial canker resistance Physical mapping TG61 NA T07 3565619 0 T07 3566030 0 10.3390/cimb45020090 NA NA t4081.T003672 1 Bacterial canker resistance Physical mapping TG210 NA T07 30282312 0 T07 30282470 0 10.3390/cimb45020090 NA NA t4081.T003673 1 Bacterial canker resistance Physical mapping TG174- TG20A NA T07 59483951 0 T07 65632413 0 10.3390/cimb45020090 NA NA t4081.T003674 1 Bacterial canker resistance Physical mapping TG41-TG261 NA T08 53832322 0 T08 58596385 0 10.3390/cimb45020090 NA NA t4081.T003675 1 Bacterial canker resistance Physical mapping TG9-TG223A NA T09 1942009 0 T09 2816764 0 10.3390/cimb45020090 NA NA t4081.T003676 1 Bacterial canker resistance Physical mapping TG35 NA T09 62387893 0 T09 62387383 0 10.3390/cimb45020090 NA NA t4081.T003677 1 Bacterial canker resistance Physical mapping TG103 NA T10 57572715 0 T10 57572226 0 10.3390/cimb45020090 NA NA t4081.T003678 1 Bacterial canker resistance Physical mapping TG353-TG34 NA 2 42997178 0 2 49197691 0 10.3390/cimb45020090 NA NA t4081.T003679 1 Bacterial canker resistance Physical mapping TG537-TG91 NA 2 49089879 0 2 50189289 0 10.3390/cimb45020090 NA NA t4081.T003680 1 Bacterial canker resistance Physical mapping CT202-TG358 NA 5 59858052 0 5 61457155 0 10.3390/cimb45020090 NA NA t4081.T003681 1 Bacterial canker resistance Physical mapping TG342-TG61 NA 7 484118 0 7 3565619 0 10.3390/cimb45020090 NA NA t4081.T003682 1 Bacterial canker resistance Physical mapping TG174-TG20A NA 7 59483951 0 7 65632413 0 10.3390/cimb45020090 NA NA t4081.T003683 1 Bacterial canker resistance Physical mapping TG41-TG261 NA 8 53832322 0 8 58596385 0 10.3390/cimb45020090 NA NA t4081.T003684 1 Bacterial canker resistance Physical mapping TG254-TG223A NA 9 85353 0 9 2816764 0 10.3390/cimb45020090 NA NA t4081.T003685 Solyc08g075330.3.1 5 β- Carotene Association analysis 60 accessions Snp_64706 NA 0 0 0 0 57.57 9.03 10.3389/fpls.2022.1031776 NA NA t4081.T003686 Solyc06g072280.3.1 5 β- Carotene Association analysis 60 accessions Snp_57377 NA 0 0 0 0 42.23 9 10.3389/fpls.2022.1031776 NA NA t4081.T003687 Solyc06g072290.3.1 5 β- Carotene Association analysis 60 accessions Snp_57374 NA 0 0 0 0 42.23 8.17 10.3389/fpls.2022.1031776 NA NA t4081.T003688 Solyc06g072350.3.1 5 β- Carotene Association analysis 60 accessions Bcyc_868 NA 0 0 0 0 42.29 8.17 10.3389/fpls.2022.1031776 NA NA t4081.T003689 Solyc06g072410.3.1 5 β- Carotene Association analysis 60 accessions CL016102-0429_Snp_57352 NA 0 0 0 0 42.34 8.17 10.3389/fpls.2022.1031776 NA NA t4081.T003690 Solyc08g066650.3.1 5 β- Carotene Association analysis 60 accessions Snp_48550 NA 0 0 0 0 53.52 8.16 10.3389/fpls.2022.1031776 NA NA t4081.T003691 Solyc08g067020.5.1 5 β- Carotene Association analysis 60 accessions Snp_18185 NA 0 0 0 0 54 8.16 10.3389/fpls.2022.1031776 NA NA t4081.T003692 Solyc07g043120.1.1 5 β- Carotene Association analysis 60 accessions Snp_10686 NA 0 0 0 0 56.55 7.1 10.3389/fpls.2022.1031776 NA NA t4081.T003693 Solyc09g089650.1.1 5 β- Carotene Association analysis 60 accessions Snp_11670 NA 0 0 0 0 65.51 6.29 10.3389/fpls.2022.1031776 NA NA t4081.T003694 Solyc05g051450.2.1 5 β- Carotene Association analysis 60 accessions Snp_37209 NA 0 0 0 0 61.18 5.24 10.3389/fpls.2022.1031776 NA NA t4081.T003695 Solyc11g069590.2.1 4 Fruit weight Association analysis 60 accessions SL1_00sc6004_2094360_Snp_44897c NA 0 0 0 0 52.28 5.23 10.3389/fpls.2022.1031776 NA NA t4081.T003696 3 Total yield QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 1 1 0 0 0 4.9 10.1186/s12870-022-04018-5 NA NA t4081.T003697 3 Total yield GWA using the filtered SNP set na NA 1 3 0 0 0 4.7847 5.572 10.1186/s12870-022-04018-5 NA NA t4081.T003698 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 1 6 0 0 0 4.1612 4.9206 10.1186/s12870-022-04018-5 NA NA t4081.T003699 3 Total yield GWA using the regularization SNP na NA 1 9 0 0 0 3.9541 4.7034 10.1186/s12870-022-04018-5 NA NA t4081.T003700 3 Total yield GWA using the regularization SNP na NA 1 9 0 0 0 4.4659 5.2394 10.1186/s12870-022-04018-5 NA NA t4081.T003701 3 Total yield GWA using the regularization SNP na NA 1 9 0 0 0 13.9825 14.991 10.1186/s12870-022-04018-5 NA NA t4081.T003702 3 Total yield GWA using the filtered SNP set na NA 1 9 0 0 0 9.5865 10.516 10.1186/s12870-022-04018-5 NA NA t4081.T003703 3 Total yield GWA using the filtered SNP set na NA 1 9 0 0 0 9.5865 10.516 10.1186/s12870-022-04018-5 NA NA t4081.T003704 3 Total yield GWA using the filtered SNP set na NA 1 9 0 0 0 5.2148 6.0194 10.1186/s12870-022-04018-5 NA NA t4081.T003705 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 1 10 0 0 0 3.1569 3.862 10.1186/s12870-022-04018-5 NA NA t4081.T003706 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 1 10 0 0 0 3.2275 3.9369 10.1186/s12870-022-04018-5 NA NA t4081.T003707 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 1 10 0 0 0 3.6295 4.3619 10.1186/s12870-022-04018-5 NA NA t4081.T003708 3 Total yield GWA using the filtered SNP set na NA 1 11 0 0 0 3.1967 3.9043 10.1186/s12870-022-04018-5 NA NA t4081.T003709 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 1 11 0 0 0 5.7894 6.6152 10.1186/s12870-022-04018-5 NA NA t4081.T003710 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 1 11 0 0 0 3.3411 4.0573 10.1186/s12870-022-04018-5 NA NA t4081.T003711 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 1 11 0 0 0 3.2134 3.922 10.1186/s12870-022-04018-5 NA NA t4081.T003712 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 1 11 0 0 0 3.5662 4.2951 10.1186/s12870-022-04018-5 NA NA t4081.T003713 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 1 11 0 0 0 6.322 7.1657 10.1186/s12870-022-04018-5 NA NA t4081.T003714 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 1 11 0 0 0 3.1243 3.8274 10.1186/s12870-022-04018-5 NA NA t4081.T003715 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 1 11 0 0 0 4.8369 5.6264 10.1186/s12870-022-04018-5 NA NA t4081.T003716 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 1 11 0 0 0 5.5741 6.3922 10.1186/s12870-022-04018-5 NA NA t4081.T003717 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 1 11 0 0 0 4.1659 4.9255 10.1186/s12870-022-04018-5 NA NA t4081.T003718 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 1 11 0 0 0 3.5712 4.3004 10.1186/s12870-022-04018-5 NA NA t4081.T003719 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 1 13 0 0 0 3.8335 4.5767 10.1186/s12870-022-04018-5 NA NA t4081.T003720 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 1 23 0 0 0 5.8699 6.6985 10.1186/s12870-022-04018-5 NA NA t4081.T003721 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 1 39 0 0 0 4.8016 5.5896 10.1186/s12870-022-04018-5 NA NA t4081.T003722 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 1 39 0 0 0 5.2342 6.0396 10.1186/s12870-022-04018-5 NA NA t4081.T003723 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 1 46 0 0 0 4.9944 5.7903 10.1186/s12870-022-04018-5 NA NA t4081.T003724 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 1 59 0 0 0 3.8774 4.6228 10.1186/s12870-022-04018-5 NA NA t4081.T003725 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 1 59 0 0 0 6.0965 6.9328 10.1186/s12870-022-04018-5 NA NA t4081.T003726 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 1 60 0 0 0 4.3848 5.1546 10.1186/s12870-022-04018-5 NA NA t4081.T003727 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 2 3 0 0 0 10.6366 11.5877 10.1186/s12870-022-04018-5 NA NA t4081.T003728 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 2 10 0 0 0 4.9131 5.7057 10.1186/s12870-022-04018-5 NA NA t4081.T003729 3 Total yield QTL linkage mapping Fla. 7771 × Fla. 7060 F2 NA 2 16 0 0 0 4.5 10.1186/s12870-022-04018-5 NA NA t4081.T003730 3 Total yield GWA using the regularization SNP na NA 2 20 0 0 0 3.8759 4.6212 10.1186/s12870-022-04018-5 NA NA t4081.T003731 3 Total yield GWA using the regularization SNP na NA 2 20 0 0 0 3.6858 4.4212 10.1186/s12870-022-04018-5 NA NA t4081.T003732 3 Total yield GWA using the regularization SNP na NA 2 20 0 0 0 3.7292 4.4669 10.1186/s12870-022-04018-5 NA NA t4081.T003733 3 Total yield GWA using the filtered SNP set na NA 2 20 0 0 0 4.8237 5.6126 10.1186/s12870-022-04018-5 NA NA t4081.T003734 3 Total yield GWA using the filtered SNP set na NA 2 20 0 0 0 4.8237 5.6126 10.1186/s12870-022-04018-5 NA NA t4081.T003735 3 Total yield GWA using the regularization SNP na NA 2 22 0 0 0 4.9139 5.7065 10.1186/s12870-022-04018-5 NA NA t4081.T003736 3 Total yield GWA using the filtered SNP set na NA 2 22 0 0 0 3.4565 4.1793 10.1186/s12870-022-04018-5 NA NA t4081.T003737 3 Total yield GWA using the filtered SNP set na NA 2 22 0 0 0 3.4565 4.1793 10.1186/s12870-022-04018-5 NA NA t4081.T003738 3 Total yield GWA using the filtered SNP set na NA 2 23 0 0 0 6.1075 6.9441 10.1186/s12870-022-04018-5 NA NA t4081.T003739 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 2 23 0 0 0 6.9741 7.8379 10.1186/s12870-022-04018-5 NA NA t4081.T003740 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 2 27 0 0 0 3.7714 4.5114 10.1186/s12870-022-04018-5 NA NA t4081.T003741 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 3 1 0 0 0 4.5741 5.3524 10.1186/s12870-022-04018-5 NA NA t4081.T003742 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 3 5 0 0 0 3.4557 4.1784 10.1186/s12870-022-04018-5 NA NA t4081.T003743 3 Yield of red-colored fruit regardless of size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 3 5 0 0 0 10 10.1186/s12870-022-04018-5 NA NA t4081.T003744 3 Total yield GWA using the filtered SNP set na NA 3 7 0 0 0 3.3448 4.0612 10.1186/s12870-022-04018-5 NA NA t4081.T003745 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 3 24 0 0 0 6.3523 7.1969 10.1186/s12870-022-04018-5 NA NA t4081.T003746 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 3 28 0 0 0 4.1166 4.8739 10.1186/s12870-022-04018-5 NA NA t4081.T003747 3 Total yield QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 3 32 0 0 0 12.5 10.1186/s12870-022-04018-5 NA NA t4081.T003748 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 3 43 0 0 0 5.4672 6.2814 10.1186/s12870-022-04018-5 NA NA t4081.T003749 3 Total yield GWA using the filtered SNP set na NA 3 47 0 0 0 4.885 5.6764 10.1186/s12870-022-04018-5 NA NA t4081.T003750 3 Total yield QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 4 8 0 0 0 7 10.1186/s12870-022-04018-5 NA NA t4081.T003751 3 Total yield QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 4 8 0 0 0 14 10.1186/s12870-022-04018-5 NA NA t4081.T003752 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 4 16 0 0 0 6.9799 7.8438 10.1186/s12870-022-04018-5 NA NA t4081.T003753 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 4 19 0 0 0 3.8156 4.5578 10.1186/s12870-022-04018-5 NA NA t4081.T003754 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 4 21 0 0 0 5.2208 6.0256 10.1186/s12870-022-04018-5 NA NA t4081.T003755 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 4 29 0 0 0 5.017 5.8138 10.1186/s12870-022-04018-5 NA NA t4081.T003756 3 Total yield GWA using the regularization SNP na NA 4 31 0 0 0 3.3282 4.0436 10.1186/s12870-022-04018-5 NA NA t4081.T003757 3 Total yield GWA using the filtered SNP set na NA 4 31 0 0 0 4.9153 5.708 10.1186/s12870-022-04018-5 NA NA t4081.T003758 3 Total yield GWA using the filtered SNP set na NA 4 39 0 0 0 6.7121 7.568 10.1186/s12870-022-04018-5 NA NA t4081.T003759 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 4 42 0 0 0 6.6064 7.4591 10.1186/s12870-022-04018-5 NA NA t4081.T003760 3 Total yield QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 4 49 0 0 0 10 10.1186/s12870-022-04018-5 NA NA t4081.T003761 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 4 58 0 0 0 5 10.1186/s12870-022-04018-5 NA NA t4081.T003762 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 7771 × Fla. 7060 F2 NA 5 8 0 0 0 9 10.1186/s12870-022-04018-5 NA NA t4081.T003763 3 Total yield QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 5 8 0 0 0 15.1 10.1186/s12870-022-04018-5 NA NA t4081.T003764 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 7771 × Fla. 7060 F2 NA 5 8 0 0 0 8 10.1186/s12870-022-04018-5 NA NA t4081.T003765 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 7771 × Fla. 7060 F2 NA 5 8 0 0 0 7 10.1186/s12870-022-04018-5 NA NA t4081.T003766 3 Total yield GWA using the filtered SNP set na NA 5 9 0 0 0 6.3014 7.1444 10.1186/s12870-022-04018-5 NA NA t4081.T003767 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 7771 × Fla. 7060 F2 NA 5 10 0 0 0 14 10.1186/s12870-022-04018-5 NA NA t4081.T003768 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 7771 × Fla. 7060 F2 NA 5 10 0 0 0 20 10.1186/s12870-022-04018-5 NA NA t4081.T003769 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 5 11 0 0 0 7.1621 8.0313 10.1186/s12870-022-04018-5 NA NA t4081.T003770 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 5 14 0 0 0 4.1551 4.9142 10.1186/s12870-022-04018-5 NA NA t4081.T003771 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 5 16 0 0 0 5.2539 6.06 10.1186/s12870-022-04018-5 NA NA t4081.T003772 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 7771 × Fla. 7060 F2 NA 5 20 0 0 0 25 10.1186/s12870-022-04018-5 NA NA t4081.T003773 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 5 26 0 0 0 6.52 7.37 10.1186/s12870-022-04018-5 NA NA t4081.T003774 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 5 26 0 0 0 4.4145 5.1857 10.1186/s12870-022-04018-5 NA NA t4081.T003775 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 5 26 0 0 0 5.5718 6.3898 10.1186/s12870-022-04018-5 NA NA t4081.T003776 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 5 26 0 0 0 4.1887 4.9494 10.1186/s12870-022-04018-5 NA NA t4081.T003777 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 5 27 0 0 0 6.0497 6.8844 10.1186/s12870-022-04018-5 NA NA t4081.T003778 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 5 27 0 0 0 6.0711 6.9065 10.1186/s12870-022-04018-5 NA NA t4081.T003779 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 5 27 0 0 0 6.2506 7.092 10.1186/s12870-022-04018-5 NA NA t4081.T003780 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 5 27 0 0 0 5.3734 6.1841 10.1186/s12870-022-04018-5 NA NA t4081.T003781 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 5 37 0 0 0 3.1595 3.8648 10.1186/s12870-022-04018-5 NA NA t4081.T003782 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 5 47 0 0 0 5.6093 6.4287 10.1186/s12870-022-04018-5 NA NA t4081.T003783 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 7771 × Fla. 7060 F2 NA 5 48 0 0 0 31 10.1186/s12870-022-04018-5 NA NA t4081.T003784 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 6 7 0 0 0 3.3013 4.0151 10.1186/s12870-022-04018-5 NA NA t4081.T003785 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 6 7 0 0 0 6.0608 6.8959 10.1186/s12870-022-04018-5 NA NA t4081.T003786 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 6 7 0 0 0 5.0798 5.8791 10.1186/s12870-022-04018-5 NA NA t4081.T003787 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 6 7 0 0 0 4.4817 5.2559 10.1186/s12870-022-04018-5 NA NA t4081.T003788 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 6 7 0 0 0 4.3756 5.145 10.1186/s12870-022-04018-5 NA NA t4081.T003789 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 7 16 0 0 0 8.7146 9.6243 10.1186/s12870-022-04018-5 NA NA t4081.T003790 3 Total yield GWA using the filtered SNP set na NA 7 20 0 0 0 3.5027 4.2281 10.1186/s12870-022-04018-5 NA NA t4081.T003791 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 7 22 0 0 0 4.4005 5.171 10.1186/s12870-022-04018-5 NA NA t4081.T003792 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 7 22 0 0 0 6.6457 7.4996 10.1186/s12870-022-04018-5 NA NA t4081.T003793 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 7 22 0 0 0 4.47 5.2437 10.1186/s12870-022-04018-5 NA NA t4081.T003794 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 7 22 0 0 0 3.174 3.8802 10.1186/s12870-022-04018-5 NA NA t4081.T003795 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 7 22 0 0 0 4.1299 4.8878 10.1186/s12870-022-04018-5 NA NA t4081.T003796 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 7 28 0 0 0 4.5801 5.3586 10.1186/s12870-022-04018-5 NA NA t4081.T003797 3 Total yield GWA using the filtered SNP set na NA 7 28 0 0 0 6.7006 7.5562 10.1186/s12870-022-04018-5 NA NA t4081.T003798 3 Total yield GWA using the regularization SNP na NA 7 36 0 0 0 4.0659 4.8207 10.1186/s12870-022-04018-5 NA NA t4081.T003799 3 Total yield GWA using the regularization SNP na NA 7 36 0 0 0 3.873 4.6182 10.1186/s12870-022-04018-5 NA NA t4081.T003800 3 Total yield GWA using the regularization SNP na NA 7 41 0 0 0 4.1193 4.8767 10.1186/s12870-022-04018-5 NA NA t4081.T003801 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 7 60 0 0 0 4.7 10.1186/s12870-022-04018-5 NA NA t4081.T003802 3 Yield of extra-large-sized fruit QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 7 61 0 0 0 3.8 10.1186/s12870-022-04018-5 NA NA t4081.T003803 3 Yield of red-colored fruit regardless of size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 8 7 0 0 0 12 10.1186/s12870-022-04018-5 NA NA t4081.T003804 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 8 26 0 0 0 7.4801 8.3583 10.1186/s12870-022-04018-5 NA NA t4081.T003805 3 Total yield GWA using the filtered SNP set na NA 8 30 0 0 0 5.739 6.563 10.1186/s12870-022-04018-5 NA NA t4081.T003806 3 Total yield QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 8 49 0 0 0 7 10.1186/s12870-022-04018-5 NA NA t4081.T003807 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 8 50 0 0 0 8.7595 9.6703 10.1186/s12870-022-04018-5 NA NA t4081.T003808 3 Yield of any fruit smaller than medium size GWA using the regularization SNP na NA 8 50 0 0 0 3.5298 4.2567 10.1186/s12870-022-04018-5 NA NA t4081.T003809 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 8 50 0 0 0 3.9864 4.7373 10.1186/s12870-022-04018-5 NA NA t4081.T003810 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 8 51 0 0 0 3.5491 4.2771 10.1186/s12870-022-04018-5 NA NA t4081.T003811 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 8 56 0 0 0 4.2739 5.0386 10.1186/s12870-022-04018-5 NA NA t4081.T003812 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 8 56 0 0 0 5.7459 6.5701 10.1186/s12870-022-04018-5 NA NA t4081.T003813 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 8 56 0 0 0 7 7.8645 10.1186/s12870-022-04018-5 NA NA t4081.T003814 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 8 56 0 0 0 5.6017 6.4208 10.1186/s12870-022-04018-5 NA NA t4081.T003815 3 Total yield GWA using the regularization SNP na NA 9 2 0 0 0 4.1284 4.8862 10.1186/s12870-022-04018-5 NA NA t4081.T003816 3 Total yield GWA using the filtered SNP set na NA 9 2 0 0 0 4.7504 5.5362 10.1186/s12870-022-04018-5 NA NA t4081.T003817 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 9 7 0 0 0 8.9366 9.8515 10.1186/s12870-022-04018-5 NA NA t4081.T003818 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 9 14 0 0 0 5.9803 6.8127 10.1186/s12870-022-04018-5 NA NA t4081.T003819 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 9 14 0 0 0 12.8425 13.8331 10.1186/s12870-022-04018-5 NA NA t4081.T003820 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 9 14 0 0 0 3.874 4.6192 10.1186/s12870-022-04018-5 NA NA t4081.T003821 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 9 14 0 0 0 13.1663 14.1621 10.1186/s12870-022-04018-5 NA NA t4081.T003822 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 9 14 0 0 0 8.1959 9.0929 10.1186/s12870-022-04018-5 NA NA t4081.T003823 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 9 14 0 0 0 8.5163 9.4212 10.1186/s12870-022-04018-5 NA NA t4081.T003824 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 9 31 0 0 0 4.7802 5.5673 10.1186/s12870-022-04018-5 NA NA t4081.T003825 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 9 40 0 0 0 9.5193 10.4473 10.1186/s12870-022-04018-5 NA NA t4081.T003826 3 Total yield QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 9 40 0 0 0 17 10.1186/s12870-022-04018-5 NA NA t4081.T003827 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 9 57 0 0 0 10.1725 11.1143 10.1186/s12870-022-04018-5 NA NA t4081.T003828 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 9 60 0 0 0 9.7229 10.6553 10.1186/s12870-022-04018-5 NA NA t4081.T003829 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 9 60 0 0 0 10.4435 11.3908 10.1186/s12870-022-04018-5 NA NA t4081.T003830 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 9 60 0 0 0 7.9397 8.8301 10.1186/s12870-022-04018-5 NA NA t4081.T003831 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 9 60 0 0 0 6.5714 7.423 10.1186/s12870-022-04018-5 NA NA t4081.T003832 3 Yield of red-colored fruit regardless of size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 9 68 0 0 0 6 10.1186/s12870-022-04018-5 NA NA t4081.T003833 3 Yield of red-colored fruit regardless of size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 9 68 0 0 0 18 10.1186/s12870-022-04018-5 NA NA t4081.T003834 3 Yield of red-colored fruit regardless of size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 9 68 0 0 0 9 10.1186/s12870-022-04018-5 NA NA t4081.T003835 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 9 68 0 0 0 21 10.1186/s12870-022-04018-5 NA NA t4081.T003836 3 Yield of red-colored fruit regardless of size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 9 68 0 0 0 9 10.1186/s12870-022-04018-5 NA NA t4081.T003837 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 9 68 0 0 0 18 10.1186/s12870-022-04018-5 NA NA t4081.T003838 3 Total yield GWA using the filtered SNP set na NA 10 6 0 0 0 4.0555 4.8098 10.1186/s12870-022-04018-5 NA NA t4081.T003839 3 Total yield GWA using the regularization SNP na NA 10 6 0 0 0 3.3127 4.0272 10.1186/s12870-022-04018-5 NA NA t4081.T003840 3 Total yield GWA using the filtered SNP set na NA 10 13 0 0 0 8.0585 8.952 10.1186/s12870-022-04018-5 NA NA t4081.T003841 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 10 21 0 0 0 6.5366 7.3871 10.1186/s12870-022-04018-5 NA NA t4081.T003842 3 Total yield QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 10 31 0 0 0 8 10.1186/s12870-022-04018-5 NA NA t4081.T003843 3 Total yield GWA using the filtered SNP set na NA 10 48 0 0 0 5.005 5.8013 10.1186/s12870-022-04018-5 NA NA t4081.T003844 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 10 49 0 0 0 5.6729 6.4945 10.1186/s12870-022-04018-5 NA NA t4081.T003845 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 10 49 0 0 0 4.5891 5.368 10.1186/s12870-022-04018-5 NA NA t4081.T003846 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 10 49 0 0 0 3.8661 4.6109 10.1186/s12870-022-04018-5 NA NA t4081.T003847 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 10 50 0 0 0 3.2438 3.9542 10.1186/s12870-022-04018-5 NA NA t4081.T003848 3 Total yield GWA using the filtered SNP set na NA 10 50 0 0 0 6.6321 7.4856 10.1186/s12870-022-04018-5 NA NA t4081.T003849 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 10 52 0 0 0 4.0572 4.8116 10.1186/s12870-022-04018-5 NA NA t4081.T003850 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 10 55 0 0 0 5.1143 5.915 10.1186/s12870-022-04018-5 NA NA t4081.T003851 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 10 55 0 0 0 7.0824 7.9493 10.1186/s12870-022-04018-5 NA NA t4081.T003852 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 10 55 0 0 0 3.6268 4.359 10.1186/s12870-022-04018-5 NA NA t4081.T003853 3 Total yield GWA using the regularization SNP na NA 10 58 0 0 0 3.6041 4.3351 10.1186/s12870-022-04018-5 NA NA t4081.T003854 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 10 64 0 0 0 12.5 10.1186/s12870-022-04018-5 NA NA t4081.T003855 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 10 65 0 0 0 3.4799 4.204 10.1186/s12870-022-04018-5 NA NA t4081.T003856 3 Yield of red-colored fruit regardless of size GWA using the filtered SNP set na NA 10 65 0 0 0 8.9641 9.8796 10.1186/s12870-022-04018-5 NA NA t4081.T003857 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 11 4 0 0 0 4.3374 5.1051 10.1186/s12870-022-04018-5 NA NA t4081.T003858 3 Total yield GWA using the filtered SNP set na NA 11 10 0 0 0 3.092 3.7931 10.1186/s12870-022-04018-5 NA NA t4081.T003859 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 11 11 0 0 0 13 10.1186/s12870-022-04018-5 NA NA t4081.T003860 3 Total yield GWA using the filtered SNP set na NA 11 11 0 0 0 4.1336 4.8917 10.1186/s12870-022-04018-5 NA NA t4081.T003861 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 11 12 0 0 0 13 10.1186/s12870-022-04018-5 NA NA t4081.T003862 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 11 14 0 0 0 14 10.1186/s12870-022-04018-5 NA NA t4081.T003863 3 Yield of any fruit smaller than medium size GWA using the regularization SNP na NA 11 15 0 0 0 4.963 5.7576 10.1186/s12870-022-04018-5 NA NA t4081.T003864 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 11 17 0 0 0 3.6949 4.4308 10.1186/s12870-022-04018-5 NA NA t4081.T003865 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 11 18 0 0 0 4.5817 5.3603 10.1186/s12870-022-04018-5 NA NA t4081.T003866 3 Total yield GWA using the regularization SNP na NA 11 18 0 0 0 7.1945 8.0647 10.1186/s12870-022-04018-5 NA NA t4081.T003867 3 Total yield GWA using the regularization SNP na NA 11 18 0 0 0 3.6906 4.4263 10.1186/s12870-022-04018-5 NA NA t4081.T003868 3 Total yield GWA using the filtered SNP set na NA 11 18 0 0 0 3.7064 4.4429 10.1186/s12870-022-04018-5 NA NA t4081.T003869 3 Total yield GWA using the filtered SNP set na NA 11 18 0 0 0 3.7064 4.4429 10.1186/s12870-022-04018-5 NA NA t4081.T003870 3 Total yield GWA using the filtered SNP set na NA 11 18 0 0 0 3.6145 4.3461 10.1186/s12870-022-04018-5 NA NA t4081.T003871 3 Total yield GWA using the filtered SNP set na NA 11 18 0 0 0 7.7363 8.6214 10.1186/s12870-022-04018-5 NA NA t4081.T003872 3 Total yield GWA using the filtered SNP set na NA 11 18 0 0 0 4.3231 5.0901 10.1186/s12870-022-04018-5 NA NA t4081.T003873 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 11 22 0 0 0 5.632 6.4522 10.1186/s12870-022-04018-5 NA NA t4081.T003874 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 11 22 0 0 0 190 10.1186/s12870-022-04018-5 NA NA t4081.T003875 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 11 22 0 0 0 125 10.1186/s12870-022-04018-5 NA NA t4081.T003876 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 11 26 0 0 0 12 10.1186/s12870-022-04018-5 NA NA t4081.T003877 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 11 29 0 0 0 6.1173 6.9543 10.1186/s12870-022-04018-5 NA NA t4081.T003878 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 11 33 0 0 0 11 10.1186/s12870-022-04018-5 NA NA t4081.T003879 3 Total yield QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 11 33 0 0 0 17 10.1186/s12870-022-04018-5 NA NA t4081.T003880 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 11 35 0 0 0 15 10.1186/s12870-022-04018-5 NA NA t4081.T003881 3 Total yield QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 11 46 0 0 0 17 10.1186/s12870-022-04018-5 NA NA t4081.T003882 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 11 46 0 0 0 9.6508 10.5817 10.1186/s12870-022-04018-5 NA NA t4081.T003883 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 11 48 0 0 0 6.0361 6.8703 10.1186/s12870-022-04018-5 NA NA t4081.T003884 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 11 48 0 0 0 9 10.1186/s12870-022-04018-5 NA NA t4081.T003885 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 7771 × Fla. 7060 F2 NA 11 52 0 0 0 4.7 10.1186/s12870-022-04018-5 NA NA t4081.T003886 3 Total yield GWA using the filtered SNP set na NA 11 54 0 0 0 11.4912 12.4585 10.1186/s12870-022-04018-5 NA NA t4081.T003887 3 Total yield GWA using the filtered SNP set na NA 11 54 0 0 0 4.5133 5.2889 10.1186/s12870-022-04018-5 NA NA t4081.T003888 3 Yield of extra-large-sized fruit QTL linkage mapping Fla. 7907B × Fla. 8059 F2 NA 12 1 0 0 0 7 10.1186/s12870-022-04018-5 NA NA t4081.T003889 3 Yield of extra-large-sized fruit QTL linkage mapping Fla. 7946 × Fla. 7776 F2 NA 12 2 0 0 0 4.6 10.1186/s12870-022-04018-5 NA NA t4081.T003890 3 Total yield QTL linkage mapping Fla. 7771 × Fla. 7060 F2 NA 12 2 0 0 0 4.2 10.1186/s12870-022-04018-5 NA NA t4081.T003891 3 Yield of red-colored fruit regardless of size GWA using the regularization SNP na NA 12 4 0 0 0 4.1715 4.9314 10.1186/s12870-022-04018-5 NA NA t4081.T003892 3 Total yield GWA using the filtered SNP set na NA 12 6 0 0 0 11.6332 12.6031 10.1186/s12870-022-04018-5 NA NA t4081.T003893 3 Total yield GWA using the regularization SNP na NA 12 16 0 0 0 4.1109 4.8679 10.1186/s12870-022-04018-5 NA NA t4081.T003894 3 Total yield GWA using the regularization SNP na NA 12 17 0 0 0 6.8613 7.7217 10.1186/s12870-022-04018-5 NA NA t4081.T003895 3 Yield of extra-large-sized fruit GWA using the regularization SNP na NA 12 18 0 0 0 6.6913 7.5466 10.1186/s12870-022-04018-5 NA NA t4081.T003896 3 Yield of red-colored fruit regardless of size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 12 22 0 0 0 5 10.1186/s12870-022-04018-5 NA NA t4081.T003897 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 12 26 0 0 0 4.3 10.1186/s12870-022-04018-5 NA NA t4081.T003898 3 Yield of red-colored fruit regardless of size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 12 28 0 0 0 6.5 10.1186/s12870-022-04018-5 NA NA t4081.T003899 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 12 29 0 0 0 5 10.1186/s12870-022-04018-5 NA NA t4081.T003900 3 Yield of red-colored fruit regardless of size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 12 30 0 0 0 6.5 10.1186/s12870-022-04018-5 NA NA t4081.T003901 3 Yield of any fruit smaller than medium size GWA using the regularization SNP na NA 12 30 0 0 0 3.0377 3.7353 10.1186/s12870-022-04018-5 NA NA t4081.T003902 3 Yield of any fruit smaller than medium size GWA using the regularization SNP na NA 12 30 0 0 0 3.6325 4.365 10.1186/s12870-022-04018-5 NA NA t4081.T003903 3 Yield of any fruit smaller than medium size GWA using the regularization SNP na NA 12 30 0 0 0 3.0377 3.7354 10.1186/s12870-022-04018-5 NA NA t4081.T003904 3 Yield of any fruit smaller than medium size GWA using the regularization SNP na NA 12 33 0 0 0 4.1985 4.9597 10.1186/s12870-022-04018-5 NA NA t4081.T003905 3 Yield of any fruit smaller than medium size GWA using the regularization SNP na NA 12 33 0 0 0 5.4628 6.2768 10.1186/s12870-022-04018-5 NA NA t4081.T003906 3 Yield of any fruit smaller than medium size GWA using the regularization SNP na NA 12 33 0 0 0 4.1985 4.9597 10.1186/s12870-022-04018-5 NA NA t4081.T003907 3 Yield of any fruit smaller than medium size GWA using the regularization SNP na NA 12 33 0 0 0 4.6012 5.3806 10.1186/s12870-022-04018-5 NA NA t4081.T003908 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 12 33 0 0 0 8.7742 9.6853 10.1186/s12870-022-04018-5 NA NA t4081.T003909 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 12 33 0 0 0 9.1132 10.0322 10.1186/s12870-022-04018-5 NA NA t4081.T003910 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 12 33 0 0 0 8.7655 9.6764 10.1186/s12870-022-04018-5 NA NA t4081.T003911 3 Yield of extra-large-sized fruit GWA using the filtered SNP set na NA 12 33 0 0 0 3.5156 4.2417 10.1186/s12870-022-04018-5 NA NA t4081.T003912 3 Total yield GWA using the filtered SNP set na NA 12 33 0 0 0 4.3054 5.0716 10.1186/s12870-022-04018-5 NA NA t4081.T003913 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 12 56 0 0 0 14 10.1186/s12870-022-04018-5 NA NA t4081.T003914 3 Total yield GWA using the regularization SNP na NA 12 57 0 0 0 3.7055 4.442 10.1186/s12870-022-04018-5 NA NA t4081.T003915 3 Yield of extra-large-sized fruit QTL linkage mapping Fla. 7771 × Fla. 7060 F2 NA 12 57 0 0 0 4.2 10.1186/s12870-022-04018-5 NA NA t4081.T003916 3 Yield of any fruit smaller than medium size QTL linkage mapping Fla. 8249 × Fla. 8124C F2 NA 12 58 0 0 0 18 10.1186/s12870-022-04018-5 NA NA t4081.T003917 3 Yield of any fruit smaller than medium size GWA using the regularization SNP na NA 12 61 0 0 0 7.2608 8.1328 10.1186/s12870-022-04018-5 NA NA t4081.T003918 3 Yield of any fruit smaller than medium size GWA using the filtered SNP set na NA 12 61 0 0 0 3.54 4.2675 10.1186/s12870-022-04018-5 NA NA t4081.T003919 3 Total yield GWA using the regularization SNP na NA 12 61 0 0 0 5.182 5.9853 10.1186/s12870-022-04018-5 NA NA t4081.T003920 4 Hue Interval mapping LA1141 × OH8245 BC2S3 B NA 6 43562526 0 0 0 2.74 10.1002/pld3.394 NA NA t4081.T003921 4 Hue Interval mapping LA1141 × OH8245 BC2S3 atv NA 7 61003154 0 0 0 2.61 10.1002/pld3.394 NA NA t4081.T003922 4 Hue Interval mapping LA1141 × OH8245 BC2S3 u NA 10 2293088 0 0 0 2.65 10.1002/pld3.394 NA NA t4081.T003923 4 Hue Interval mapping LA1141 × OH8245 BC2S3 solcap_snp_sl_100691 NA 10 64276927 0 0 0 7.15 10.1002/pld3.394 NA NA t4081.T003924 4 Hue Interval mapping LA1141 × OH8245 BC2S3 Ant1 NA 10 64287679 0 0 0 9.4 10.1002/pld3.394 NA NA t4081.T003925 4 Hue Interval mapping LA1141 × OH8245 BC2S3 An2-like NA 10 64317522 0 0 0 9.4 10.1002/pld3.394 NA NA t4081.T003926 4 Hue Interval mapping LA1141 × OH8245 BC2S3 solcap_snp_sl_8787 NA 10 64366981 0 0 0 6.45 10.1002/pld3.394 NA NA t4081.T003927 4 Chroma Interval mapping LA1141 × OH8245 BC2S3 B NA 6 43562526 0 0 0 0.173 10.1002/pld3.394 NA NA t4081.T003928 4 Chroma Interval mapping LA1141 × OH8245 BC2S3 atv NA 7 61003154 0 0 0 1.43 10.1002/pld3.394 NA NA t4081.T003929 4 Chroma Interval mapping LA1141 × OH8245 BC2S3 solcap_snp_sl_46386 NA 10 1610355 0 0 0 8 10.1002/pld3.394 NA NA t4081.T003930 4 Chroma Interval mapping LA1141 × OH8245 BC2S3 u NA 10 2293088 0 0 0 12 10.1002/pld3.394 NA NA t4081.T003931 4 Chroma Interval mapping LA1141 × OH8245 BC2S3 solcap_snp_sl_34373 NA 10 3783034 0 0 0 9.45 10.1002/pld3.394 NA NA t4081.T003932 4 Chroma Interval mapping LA1141 × OH8245 BC2S3 solcap_snp_sl_100691 NA 10 64276927 0 0 0 11.98 10.1002/pld3.394 NA NA t4081.T003933 4 Chroma Interval mapping LA1141 × OH8245 BC2S3 Ant1 NA 10 64287679 0 0 0 14.24 10.1002/pld3.394 NA NA t4081.T003934 4 Chroma Interval mapping LA1141 × OH8245 BC2S3 An2-like NA 10 64317522 0 0 0 14.24 10.1002/pld3.394 NA NA t4081.T003935 4 Chroma Interval mapping LA1141 × OH8245 BC2S3 solcap_snp_sl_8787 NA 10 64366981 0 0 0 1.37 10.1002/pld3.394 NA NA t4081.T003936 4 L* Interval mapping LA1141 × OH8245 BC2S3 solcap_snp_sl_14458 NA 6 36520866 0 0 0 4.18 10.1002/pld3.394 NA NA t4081.T003937 4 L* Interval mapping LA1141 × OH8245 BC2S3 solcap_snp_sl_1337 NA 6 37305722 0 0 0 5.08 10.1002/pld3.394 NA NA t4081.T003938 4 L* Interval mapping LA1141 × OH8245 BC2S3 solcap_snp_sl_12757 NA 6 38186675 0 0 0 4.25 10.1002/pld3.394 NA NA t4081.T003939 4 L* Interval mapping LA1141 × OH8245 BC2S3 B NA 6 43562526 0 0 0 1.26 10.1002/pld3.394 NA NA t4081.T003940 4 L* Interval mapping LA1141 × OH8245 BC2S3 atv NA 7 6112941 0 0 0 1.48 10.1002/pld3.394 NA NA t4081.T003941 4 L* Interval mapping LA1141 × OH8245 BC2S3 solcap_snp_sl_46386 NA 10 1610355 0 0 0 8.64 10.1002/pld3.394 NA NA t4081.T003942 4 L* Interval mapping LA1141 × OH8245 BC2S3 u NA 10 2293088 0 0 0 15.25 10.1002/pld3.394 NA NA t4081.T003943 4 L* Interval mapping LA1141 × OH8245 BC2S3 solcap_snp_sl_34373 NA 10 3783034 0 0 0 12.43 10.1002/pld3.394 NA NA t4081.T003944 4 L* Interval mapping LA1141 × OH8245 BC2S3 Ant1 NA 10 64287679 0 0 0 1.13 10.1002/pld3.394 NA NA t4081.T003945 4 L* Interval mapping LA1141 × OH8245 BC2S3 An2-like NA 10 64317522 0 0 0 1.13 10.1002/pld3.394 NA NA