t34305.T000001 NW 6 nodule weight/plant QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0832 Lj3.0 Lj3.0_chr0 140451547 140451676 NA NA 0 0 9.6 3.95 NA 10.1007/s10265-011-0459-1 t34305.M000690.1 NA t34305.T000002 SL 4 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0832 Lj3.0 Lj3.0_chr0 140451547 140451676 NA NA 0 0 12.6 3.65 NA 10.1007/s10265-011-0459-1 t34305.M000690.1 NA t34305.T000002 SL 6 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0832 Lj3.0 Lj3.0_chr0 140451547 140451676 NA NA 0 0 12.6 3.65 NA 10.1007/s10265-011-0459-1 t34305.M000690.1 NA t34305.T000003 SL 4 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0088 Lj3.0 Lj3.0_chr1 217113 217274 NA NA 0 0 0 5.42 NA 10.1007/s10265-011-0459-1 t34305.M000246.1 NA t34305.T000003 SL 6 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0088 Lj3.0 Lj3.0_chr1 217113 217274 NA NA 0 0 0 5.42 NA 10.1007/s10265-011-0459-1 t34305.M000246.1 NA t34305.T000004 SW bac- 4 shoot dry weight without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0027 Lj3.0 Lj3.0_chr1 10871784 10871961 NA NA 0 0 2 2.16 NA 10.1007/s10265-011-0459-1 t34305.M000188.1 NA t34305.T000004 SW bac- 6 shoot dry weight without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0027 Lj3.0 Lj3.0_chr1 10871784 10871961 NA NA 0 0 2 2.16 NA 10.1007/s10265-011-0459-1 t34305.M000188.1 NA t34305.T000005 SL bac- 4 stem length without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0027 Lj3.0 Lj3.0_chr1 10871784 10871961 TM0063 Lj3.0_chr1 17766925 17767088 3 7.5 NA 10.1007/s10265-011-0459-1 t34305.M000188.1 t34305.M000222.1 t34305.T000005 SL bac- 6 stem length without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0027 Lj3.0 Lj3.0_chr1 10871784 10871961 TM0063 Lj3.0_chr1 17766925 17767088 3 7.5 NA 10.1007/s10265-011-0459-1 t34305.M000188.1 t34305.M000222.1 t34305.T000006 SL 4 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0113 Lj3.0 Lj3.0_chr1 38738303 38738438 TM0805 Lj3.0_chr1 42910317 42910477 46.6 7.9 NA 10.1007/s10265-011-0459-1 t34305.M000270.1 t34305.M000677.1 t34305.T000006 SL 6 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0113 Lj3.0 Lj3.0_chr1 38738303 38738438 TM0805 Lj3.0_chr1 42910317 42910477 46.6 7.9 NA 10.1007/s10265-011-0459-1 t34305.M000270.1 t34305.M000677.1 t34305.T000007 SL bac- 4 stem length without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0113 Lj3.0 Lj3.0_chr1 38738303 38738438 TM0805 Lj3.0_chr1 42910317 42910477 49.5 8.04 NA 10.1007/s10265-011-0459-1 t34305.M000270.1 t34305.M000677.1 t34305.T000007 SL bac- 6 stem length without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0113 Lj3.0 Lj3.0_chr1 38738303 38738438 TM0805 Lj3.0_chr1 42910317 42910477 49.5 8.04 NA 10.1007/s10265-011-0459-1 t34305.M000270.1 t34305.M000677.1 t34305.T000008 SL 4 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM1150 Lj3.0 Lj3.0_chr2 21552345 21552501 TM0076 Lj3.0_chr2 22434136 22434294 42.7 4.04 NA 10.1007/s10265-011-0459-1 t34305.M000753.1 t34305.M000234.1 t34305.T000008 SL 6 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM1150 Lj3.0 Lj3.0_chr2 21552345 21552501 TM0076 Lj3.0_chr2 22434136 22434294 42.7 4.04 NA 10.1007/s10265-011-0459-1 t34305.M000753.1 t34305.M000234.1 t34305.T000009 SL bac- 4 stem length without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM1150 Lj3.0 Lj3.0_chr2 21552345 21552501 NA NA 0 0 42.7 4.03 NA 10.1007/s10265-011-0459-1 t34305.M000753.1 NA t34305.T000009 SL bac- 6 stem length without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM1150 Lj3.0 Lj3.0_chr2 21552345 21552501 NA NA 0 0 42.7 4.03 NA 10.1007/s10265-011-0459-1 t34305.M000753.1 NA t34305.T000010 NW 6 nodule weight/plant QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0550 Lj3.0 Lj3.0_chr2 29521387 29521546 TM0324 Lj3.0_chr2 42708540 42708734 63.9 3.1 NA 10.1007/s10265-011-0459-1 t34305.M000576.1 t34305.M000451.1 t34305.T000011 ARA/NN 6 acetylene reduction activity/nodule number QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0550 Lj3.0 Lj3.0_chr2 29521387 29521546 TM0002 Lj3.0_chr2 36581371 36581530 66.9 3.89 NA 10.1007/s10265-011-0459-1 t34305.M000576.1 t34305.M000164.1 t34305.T000012 ARA/P 6 acetylene reduction activity/plant QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0550 Lj3.0 Lj3.0_chr2 29521387 29521546 TM0324 Lj3.0_chr2 42708540 42708734 68.3 5.56 NA 10.1007/s10265-011-0459-1 t34305.M000576.1 t34305.M000451.1 t34305.T000013 SL 4 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0996 Lj3.0 Lj3.0_chr3 11233257 11233411 NA NA 0 0 22.1 2.25 NA 10.1007/s10265-011-0459-1 t34305.M000732.1 NA t34305.T000013 SL 6 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0996 Lj3.0 Lj3.0_chr3 11233257 11233411 NA NA 0 0 22.1 2.25 NA 10.1007/s10265-011-0459-1 t34305.M000732.1 NA t34305.T000014 SL bac- 4 stem length without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0996 Lj3.0 Lj3.0_chr3 11233257 11233411 TM0190 Lj3.0_chr3 13629310 13629529 23.1 3.09 NA 10.1007/s10265-011-0459-1 t34305.M000732.1 t34305.M000340.1 t34305.T000014 SL bac- 6 stem length without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0996 Lj3.0 Lj3.0_chr3 11233257 11233411 TM0190 Lj3.0_chr3 13629310 13629529 23.1 3.09 NA 10.1007/s10265-011-0459-1 t34305.M000732.1 t34305.M000340.1 t34305.T000015 NN 6 nodule number/plant QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0083 Lj3.0 Lj3.0_chr3 25069136 25069297 NA NA 0 0 38.8 6.07 NA 10.1007/s10265-011-0459-1 t34305.M000241.1 NA t34305.T000016 ARA/NW 6 acetylene reduction activity/nodule weight QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0203 Lj3.0 Lj3.0_chr3 35756119 35756270 NA NA 0 0 62.1 2.39 NA 10.1007/s10265-011-0459-1 t34305.M000352.1 NA t34305.T000017 NW 6 nodule weight/plant QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0203 Lj3.0 Lj3.0_chr3 35756119 35756270 NA NA 0 0 67.8 2.36 NA 10.1007/s10265-011-0459-1 t34305.M000352.1 NA t34305.T000018 ARA/NN 6 acetylene reduction activity/nodule number QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0256 Lj3.0 Lj3.0_chr4 2391557 2391699 TM0832 Lj3.0_chr0 140451547 140451676 7.6 2.82 NA 10.1007/s10265-011-0459-1 t34305.M000398.1 t34305.M000690.1 t34305.T000019 ARA/P 6 acetylene reduction activity/plant QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0256 Lj3.0 Lj3.0_chr4 2391557 2391699 TM0832 Lj3.0_chr0 140451547 140451676 9.6 3.05 NA 10.1007/s10265-011-0459-1 t34305.M000398.1 t34305.M000690.1 t34305.T000020 ARA/P 6 acetylene reduction activity/plant QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0030 Lj3.0 Lj3.0_chr4 26815844 26815989 NA NA 0 0 34.2 2.65 NA 10.1007/s10265-011-0459-1 t34305.M000191.1 NA t34305.T000021 NW 6 nodule weight/plant QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0030 Lj3.0 Lj3.0_chr4 26815844 26815989 TM0664 Lj3.0_chr4 29584470 29584569 35.2 2.18 NA 10.1007/s10265-011-0459-1 t34305.M000191.1 t34305.M000623.1 t34305.T000022 ARA/NW 6 acetylene reduction activity/nodule weight QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0664 Lj3.0 Lj3.0_chr4 29584470 29584569 NA NA 0 0 37.2 3.5 NA 10.1007/s10265-011-0459-1 t34305.M000623.1 NA t34305.T000023 SL 4 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0266 Lj3.0 Lj3.0_chr4 38566944 38567108 TM0097 Lj3.0_chr4 41452428 41452611 65.4 2.18 NA 10.1007/s10265-011-0459-1 t34305.M000407.1 t34305.M000255.1 t34305.T000023 SL 6 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0266 Lj3.0 Lj3.0_chr4 38566944 38567108 TM0097 Lj3.0_chr4 41452428 41452611 65.4 2.18 NA 10.1007/s10265-011-0459-1 t34305.M000407.1 t34305.M000255.1 t34305.T000024 ARA/P 6 acetylene reduction activity/plant QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0095 Lj3.0 Lj3.0_chr5 25291632 25291802 NA NA 0 0 18.5 2.11 NA 10.1007/s10265-011-0459-1 t34305.M000253.1 NA t34305.T000025 NW 6 nodule weight/plant QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0095 Lj3.0 Lj3.0_chr5 25291632 25291802 NA NA 0 0 18.5 3.89 NA 10.1007/s10265-011-0459-1 t34305.M000253.1 NA t34305.T000026 SW bac- 4 shoot dry weight without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0095 Lj3.0 Lj3.0_chr5 25291632 25291802 TM0909 Lj3.0_chr5 24208865 24209009 20.5 2.82 NA 10.1007/s10265-011-0459-1 t34305.M000253.1 t34305.M000711.1 t34305.T000026 SW bac- 6 shoot dry weight without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0095 Lj3.0 Lj3.0_chr5 25291632 25291802 TM0909 Lj3.0_chr5 24208865 24209009 20.5 2.82 NA 10.1007/s10265-011-0459-1 t34305.M000253.1 t34305.M000711.1 t34305.T000027 RL bac- 4 root length without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0909 Lj3.0 Lj3.0_chr5 24208865 24209009 NA NA 0 0 23.1 2.01 NA 10.1007/s10265-011-0459-1 t34305.M000711.1 NA t34305.T000027 RL bac- 6 root length without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0909 Lj3.0 Lj3.0_chr5 24208865 24209009 NA NA 0 0 23.1 2.01 NA 10.1007/s10265-011-0459-1 t34305.M000711.1 NA t34305.T000028 SL bac- 4 stem length without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0909 Lj3.0 Lj3.0_chr5 24208865 24209009 TM0849 Lj3.0_chr5 23293667 23293779 24.1 2.83 NA 10.1007/s10265-011-0459-1 t34305.M000711.1 t34305.M000697.1 t34305.T000028 SL bac- 6 stem length without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0909 Lj3.0 Lj3.0_chr5 24208865 24209009 TM0849 Lj3.0_chr5 23293667 23293779 24.1 2.83 NA 10.1007/s10265-011-0459-1 t34305.M000711.1 t34305.M000697.1 t34305.T000029 SL 4 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0186 Lj3.0 Lj3.0_chr5 20644864 20644999 TM0341 Lj3.0_chr5 18517193 18517309 38.7 5.09 NA 10.1007/s10265-011-0459-1 t34305.M000337.1 t34305.M000465.1 t34305.T000029 SL 6 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0186 Lj3.0 Lj3.0_chr5 20644864 20644999 TM0341 Lj3.0_chr5 18517193 18517309 38.7 5.09 NA 10.1007/s10265-011-0459-1 t34305.M000337.1 t34305.M000465.1 t34305.T000030 SL 4 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0014 Lj3.0 Lj3.0_chr6 3760058 3760216 NA NA 0 0 8.7 3.86 NA 10.1007/s10265-011-0459-1 t34305.M000176.1 NA t34305.T000030 SL 6 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0014 Lj3.0 Lj3.0_chr6 3760058 3760216 NA NA 0 0 8.7 3.86 NA 10.1007/s10265-011-0459-1 t34305.M000176.1 NA t34305.T000031 SL 4 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM1417 Lj3.0 Lj3.0_chr6 1055655 1055825 TM0095 Lj3.0_chr5 25291632 25291802 16.2 3.68 NA 10.1007/s10265-011-0459-1 t34305.M000801.1 t34305.M000253.1 t34305.T000031 SL 6 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM1417 Lj3.0 Lj3.0_chr6 1055655 1055825 TM0095 Lj3.0_chr5 25291632 25291802 16.2 3.68 NA 10.1007/s10265-011-0459-1 t34305.M000801.1 t34305.M000253.1 t34305.T000032 ARA/NW 6 acetylene reduction activity/nodule weight QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM1417 Lj3.0 Lj3.0_chr6 1055655 1055825 TM0095 Lj3.0_chr5 25291632 25291802 18.5 4.93 NA 10.1007/s10265-011-0459-1 t34305.M000801.1 t34305.M000253.1 t34305.T000033 SL 4 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0139 Lj3.0 Lj3.0_chr6 20744098 20744242 TM0756 Lj3.0_chr6 21783429 21783556 49.6 4.7 NA 10.1007/s10265-011-0459-1 t34305.M000295.1 t34305.M000664.1 t34305.T000033 SL 6 stem length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0139 Lj3.0 Lj3.0_chr6 20744098 20744242 TM0756 Lj3.0_chr6 21783429 21783556 49.6 4.7 NA 10.1007/s10265-011-0459-1 t34305.M000295.1 t34305.M000664.1 t34305.T000034 SL bac- 4 stem length without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0055 Lj3.0 Lj3.0_chr6 25294502 25294649 NA NA 0 0 61.5 2.85 NA 10.1007/s10265-011-0459-1 t34305.M000214.1 NA t34305.T000034 SL bac- 6 stem length without inoculation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0055 Lj3.0 Lj3.0_chr6 25294502 25294649 NA NA 0 0 61.5 2.85 NA 10.1007/s10265-011-0459-1 t34305.M000214.1 NA t34305.T000035 Total primary shoot length 1 Total primary shoot length (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0113 Lj3.0 Lj3.0_chr1 38738303 38738438 TM0805 Lj3.0_chr1 42910317 42910477 45 4.84 <0.0001 10.1111/pce.12268 t34305.M000270.1 t34305.M000677.1 t34305.T000035 Total primary shoot length 4 Total primary shoot length (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0113 Lj3.0 Lj3.0_chr1 38738303 38738438 TM0805 Lj3.0_chr1 42910317 42910477 45 4.84 <0.0001 10.1111/pce.12268 t34305.M000270.1 t34305.M000677.1 t34305.T000036 Total primary shoot length 1 Total primary shoot length (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0113 Lj3.0 Lj3.0_chr1 38738303 38738438 TM0805 Lj3.0_chr1 42910317 42910477 45 2.4 0.0069 10.1111/pce.12268 t34305.M000270.1 t34305.M000677.1 t34305.T000036 Total primary shoot length 4 Total primary shoot length (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0113 Lj3.0 Lj3.0_chr1 38738303 38738438 TM0805 Lj3.0_chr1 42910317 42910477 45 2.4 0.0069 10.1111/pce.12268 t34305.M000270.1 t34305.M000677.1 t34305.T000037 Primary shoot number 1 Primary shoot number (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0805 Lj3.0 Lj3.0_chr1 42910317 42910477 TM0222 Lj3.0_chr1 46012439 46012589 51 8.04 <0.0001 10.1111/pce.12268 t34305.M000677.1 t34305.M000370.1 t34305.T000037 Primary shoot number 4 Primary shoot number (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0805 Lj3.0 Lj3.0_chr1 42910317 42910477 TM0222 Lj3.0_chr1 46012439 46012589 51 8.04 <0.0001 10.1111/pce.12268 t34305.M000677.1 t34305.M000370.1 t34305.T000038 Primary shoot number 1 Primary shoot number (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0222 Lj3.0 Lj3.0_chr1 46012439 46012589 TM0009 Lj3.0_chr1 49389836 49389985 54 7.47 <0.0001 10.1111/pce.12268 t34305.M000370.1 t34305.M000171.1 t34305.T000038 Primary shoot number 4 Primary shoot number (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0222 Lj3.0 Lj3.0_chr1 46012439 46012589 TM0009 Lj3.0_chr1 49389836 49389985 54 7.47 <0.0001 10.1111/pce.12268 t34305.M000370.1 t34305.M000171.1 t34305.T000039 Root dry mass 1 Root dry mass (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0009 Lj3.0 Lj3.0_chr1 49389836 49389985 TM0295 Lj3.0_chr1 52855524 52855640 61 3.53 0.0009 10.1111/pce.12268 t34305.M000171.1 t34305.M000426.1 t34305.T000039 Root dry mass 4 Root dry mass (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0009 Lj3.0 Lj3.0_chr1 49389836 49389985 TM0295 Lj3.0_chr1 52855524 52855640 61 3.53 0.0009 10.1111/pce.12268 t34305.M000171.1 t34305.M000426.1 t34305.T000040 Root dry mass 1 Root dry mass (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0295 Lj3.0 Lj3.0_chr1 52855524 52855640 TM0122 Lj3.0_chr1 58546864 58546987 64 1.68 0.0363 10.1111/pce.12268 t34305.M000426.1 t34305.M000279.1 t34305.T000040 Root dry mass 4 Root dry mass (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0295 Lj3.0 Lj3.0_chr1 52855524 52855640 TM0122 Lj3.0_chr1 58546864 58546987 64 1.68 0.0363 10.1111/pce.12268 t34305.M000426.1 t34305.M000279.1 t34305.T000041 Pod dry mass 1 Pod dry mass (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0122 Lj3.0 Lj3.0_chr1 58546864 58546987 TM0105 Lj3.0_chr1 61873540 61873679 71 2.43 0.005 10.1111/pce.12268 t34305.M000279.1 t34305.M000262.1 t34305.T000041 Pod dry mass 4 Pod dry mass (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0122 Lj3.0 Lj3.0_chr1 58546864 58546987 TM0105 Lj3.0_chr1 61873540 61873679 71 2.43 0.005 10.1111/pce.12268 t34305.M000279.1 t34305.M000262.1 t34305.T000042 Chlorophyll levels 1 Chlorophyll levels (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0120 Lj3.0 Lj3.0_chr2 19868663 19868765 TM1150 Lj3.0_chr2 21552345 21552501 40.2 2.49 0.0057 10.1111/pce.12268 t34305.M000277.1 t34305.M000753.1 t34305.T000042 Chlorophyll levels 5 Chlorophyll levels (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0120 Lj3.0 Lj3.0_chr2 19868663 19868765 TM1150 Lj3.0_chr2 21552345 21552501 40.2 2.49 0.0057 10.1111/pce.12268 t34305.M000277.1 t34305.M000753.1 t34305.T000043 Root dry mass 1 Root dry mass (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0426 Lj3.0 Lj3.0_chr3 15411177 15411300 TM0087 Lj3.0_chr4 24444265 24444405 27 1.7 0.0344 10.1111/pce.12268 t34305.M000518.1 t34305.M000245.1 t34305.T000043 Root dry mass 4 Root dry mass (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0426 Lj3.0 Lj3.0_chr3 15411177 15411300 TM0087 Lj3.0_chr4 24444265 24444405 27 1.7 0.0344 10.1111/pce.12268 t34305.M000518.1 t34305.M000245.1 t34305.T000044 Number of secondary branches 1 Number of secondary branches (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0426 Lj3.0 Lj3.0_chr3 15411177 15411300 TM0087 Lj3.0_chr4 24444265 24444405 28 2.8 0.003 10.1111/pce.12268 t34305.M000518.1 t34305.M000245.1 t34305.T000044 Number of secondary branches 4 Number of secondary branches (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0426 Lj3.0 Lj3.0_chr3 15411177 15411300 TM0087 Lj3.0_chr4 24444265 24444405 28 2.8 0.003 10.1111/pce.12268 t34305.M000518.1 t34305.M000245.1 t34305.T000045 Total primary shoot length 1 Total primary shoot length (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0035 Lj3.0 Lj3.0_chr3 14526694 14526804 TM0110 Lj3.0_chr3 22755676 22755812 29 2.52 0.0053 10.1111/pce.12268 t34305.M000196.1 t34305.M000267.1 t34305.T000045 Total primary shoot length 4 Total primary shoot length (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0035 Lj3.0 Lj3.0_chr3 14526694 14526804 TM0110 Lj3.0_chr3 22755676 22755812 29 2.52 0.0053 10.1111/pce.12268 t34305.M000196.1 t34305.M000267.1 t34305.T000046 Total primary shoot length 1 Total primary shoot length (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0035 Lj3.0 Lj3.0_chr3 14526694 14526804 TM0110 Lj3.0_chr3 22755676 22755812 29 2.28 0.0089 10.1111/pce.12268 t34305.M000196.1 t34305.M000267.1 t34305.T000046 Total primary shoot length 4 Total primary shoot length (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0035 Lj3.0 Lj3.0_chr3 14526694 14526804 TM0110 Lj3.0_chr3 22755676 22755812 29 2.28 0.0089 10.1111/pce.12268 t34305.M000196.1 t34305.M000267.1 t34305.T000047 Shoot dry mass 1 Shoot dry mass (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0035 Lj3.0 Lj3.0_chr3 14526694 14526804 TM0110 Lj3.0_chr3 22755676 22755812 30 2.67 0.0034 10.1111/pce.12268 t34305.M000196.1 t34305.M000267.1 t34305.T000047 Shoot dry mass 4 Shoot dry mass (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0035 Lj3.0 Lj3.0_chr3 14526694 14526804 TM0110 Lj3.0_chr3 22755676 22755812 30 2.67 0.0034 10.1111/pce.12268 t34305.M000196.1 t34305.M000267.1 t34305.T000048 Shoot dry mass 1 Shoot dry mass (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0035 Lj3.0 Lj3.0_chr3 14526694 14526804 TM0110 Lj3.0_chr3 22755676 22755812 30 2.35 0.0068 10.1111/pce.12268 t34305.M000196.1 t34305.M000267.1 t34305.T000048 Shoot dry mass 4 Shoot dry mass (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0035 Lj3.0 Lj3.0_chr3 14526694 14526804 TM0110 Lj3.0_chr3 22755676 22755812 30 2.35 0.0068 10.1111/pce.12268 t34305.M000196.1 t34305.M000267.1 t34305.T000049 Primary shoot number 1 Primary shoot number (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0194 Lj3.0 Lj3.0_chr4 13253314 13253436 TM0281 Lj3.0_chr4 18526673 18526806 23 3.12 0.0015 10.1111/pce.12268 t34305.M000344.1 t34305.M000416.1 t34305.T000049 Primary shoot number 4 Primary shoot number (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0194 Lj3.0 Lj3.0_chr4 13253314 13253436 TM0281 Lj3.0_chr4 18526673 18526806 23 3.12 0.0015 10.1111/pce.12268 t34305.M000344.1 t34305.M000416.1 t34305.T000050 Number of secondary branches 1 Number of secondary branches (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0281 Lj3.0 Lj3.0_chr4 18526673 18526806 TM0426 Lj3.0_chr3 15411177 15411300 24.6 4.27 0.0001 10.1111/pce.12268 t34305.M000416.1 t34305.M000518.1 t34305.T000050 Number of secondary branches 4 Number of secondary branches (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0281 Lj3.0 Lj3.0_chr4 18526673 18526806 TM0426 Lj3.0_chr3 15411177 15411300 24.6 4.27 0.0001 10.1111/pce.12268 t34305.M000416.1 t34305.M000518.1 t34305.T000051 Shoot dry mass 1 Shoot dry mass (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0186 Lj3.0 Lj3.0_chr5 20644864 20644999 TM0341 Lj3.0_chr5 18517193 18517309 37.2 3.73 0.0004 10.1111/pce.12268 t34305.M000337.1 t34305.M000465.1 t34305.T000051 Shoot dry mass 4 Shoot dry mass (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0186 Lj3.0 Lj3.0_chr5 20644864 20644999 TM0341 Lj3.0_chr5 18517193 18517309 37.2 3.73 0.0004 10.1111/pce.12268 t34305.M000337.1 t34305.M000465.1 t34305.T000052 Stomatal conductance 1 Stomatal conductance (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0341 Lj3.0 Lj3.0_chr5 18517193 18517309 TM0657 Lj3.0_chr5 11119564 11119695 42.2 4.08 0.0001 10.1111/pce.12268 t34305.M000465.1 t34305.M000621.1 t34305.T000052 Stomatal conductance 6 Stomatal conductance (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0341 Lj3.0 Lj3.0_chr5 18517193 18517309 TM0657 Lj3.0_chr5 11119564 11119695 42.2 4.08 0.0001 10.1111/pce.12268 t34305.M000465.1 t34305.M000621.1 t34305.T000053 Stomatal conductance 1 Stomatal conductance (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0341 Lj3.0 Lj3.0_chr5 18517193 18517309 TM0657 Lj3.0_chr5 11119564 11119695 43.2 5.13 <0.0001 10.1111/pce.12268 t34305.M000465.1 t34305.M000621.1 t34305.T000053 Stomatal conductance 6 Stomatal conductance (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0341 Lj3.0 Lj3.0_chr5 18517193 18517309 TM0657 Lj3.0_chr5 11119564 11119695 43.2 5.13 <0.0001 10.1111/pce.12268 t34305.M000465.1 t34305.M000621.1 t34305.T000054 Shoot dry mass 1 Shoot dry mass (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0341 Lj3.0 Lj3.0_chr5 18517193 18517309 TM0657 Lj3.0_chr5 11119564 11119695 43.2 4.54 0.0001 10.1111/pce.12268 t34305.M000465.1 t34305.M000621.1 t34305.T000054 Shoot dry mass 4 Shoot dry mass (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0341 Lj3.0 Lj3.0_chr5 18517193 18517309 TM0657 Lj3.0_chr5 11119564 11119695 43.2 4.54 0.0001 10.1111/pce.12268 t34305.M000465.1 t34305.M000621.1 t34305.T000055 Chlorophyll levels 1 Chlorophyll levels (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0657 Lj3.0 Lj3.0_chr5 11119564 11119695 TM0428 Lj3.0_chr5 7127906 7128049 45.2 3.6 0.0006 10.1111/pce.12268 t34305.M000621.1 t34305.M000519.1 t34305.T000055 Chlorophyll levels 5 Chlorophyll levels (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0657 Lj3.0 Lj3.0_chr5 11119564 11119695 TM0428 Lj3.0_chr5 7127906 7128049 45.2 3.6 0.0006 10.1111/pce.12268 t34305.M000621.1 t34305.M000519.1 t34305.T000056 Pod dry mass 1 Pod dry mass (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0657 Lj3.0 Lj3.0_chr5 11119564 11119695 TM0428 Lj3.0_chr5 7127906 7128049 48.1 2.13 0.0108 10.1111/pce.12268 t34305.M000621.1 t34305.M000519.1 t34305.T000056 Pod dry mass 4 Pod dry mass (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0657 Lj3.0 Lj3.0_chr5 11119564 11119695 TM0428 Lj3.0_chr5 7127906 7128049 48.1 2.13 0.0108 10.1111/pce.12268 t34305.M000621.1 t34305.M000519.1 t34305.T000057 Pod dry mass 1 Pod dry mass (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0657 Lj3.0 Lj3.0_chr5 11119564 11119695 TM0428 Lj3.0_chr5 7127906 7128049 48.1 2.23 0.0079 10.1111/pce.12268 t34305.M000621.1 t34305.M000519.1 t34305.T000057 Pod dry mass 4 Pod dry mass (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0657 Lj3.0 Lj3.0_chr5 11119564 11119695 TM0428 Lj3.0_chr5 7127906 7128049 48.1 2.23 0.0079 10.1111/pce.12268 t34305.M000621.1 t34305.M000519.1 t34305.T000058 Root absorption surface 1 Root absorption surface (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0034 Lj3.0 Lj3.0_chr5 4130584 4130767 TM0146 Lj3.0_chr5 581656 581803 53.2 5.25 <0.0001 10.1111/pce.12268 t34305.M000195.1 t34305.M000302.1 t34305.T000058 Root absorption surface 4 Root absorption surface (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0034 Lj3.0 Lj3.0_chr5 4130584 4130767 TM0146 Lj3.0_chr5 581656 581803 53.2 5.25 <0.0001 10.1111/pce.12268 t34305.M000195.1 t34305.M000302.1 t34305.T000059 Number of secondary branches 1 Number of secondary branches (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0034 Lj3.0 Lj3.0_chr5 4130584 4130767 TM0146 Lj3.0_chr5 581656 581803 55.2 5.41 <0.0001 10.1111/pce.12268 t34305.M000195.1 t34305.M000302.1 t34305.T000059 Number of secondary branches 4 Number of secondary branches (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0034 Lj3.0 Lj3.0_chr5 4130584 4130767 TM0146 Lj3.0_chr5 581656 581803 55.2 5.41 <0.0001 10.1111/pce.12268 t34305.M000195.1 t34305.M000302.1 t34305.T000060 Root dry mass 1 Root dry mass (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM1417 Lj3.0 Lj3.0_chr6 1055655 1055825 TM0095 Lj3.0_chr5 25291632 25291802 18.2 2.27 0.0112 10.1111/pce.12268 t34305.M000801.1 t34305.M000253.1 t34305.T000060 Root dry mass 4 Root dry mass (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM1417 Lj3.0 Lj3.0_chr6 1055655 1055825 TM0095 Lj3.0_chr5 25291632 25291802 18.2 2.27 0.0112 10.1111/pce.12268 t34305.M000801.1 t34305.M000253.1 t34305.T000061 Total primary shoot length 1 Total primary shoot length (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0013 Lj3.0 Lj3.0_chr6 14155490 14155696 TM0880 Lj3.0_chr6 16717630 16717805 42.3 2.42 0.0066 10.1111/pce.12268 t34305.M000175.1 t34305.M000705.1 t34305.T000061 Total primary shoot length 4 Total primary shoot length (waterlogging) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0013 Lj3.0 Lj3.0_chr6 14155490 14155696 TM0880 Lj3.0_chr6 16717630 16717805 42.3 2.42 0.0066 10.1111/pce.12268 t34305.M000175.1 t34305.M000705.1 t34305.T000062 Total primary shoot length 1 Total primary shoot length (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0756 Lj3.0 Lj3.0_chr6 21783429 21783556 TM0336 Lj3.0_chr6 24123928 24124092 53.3 3.91 0.0003 10.1111/pce.12268 t34305.M000664.1 t34305.M000461.1 t34305.T000062 Total primary shoot length 4 Total primary shoot length (control) QTL analysis Gifu B-129 x Miyakojima MG-20 RIL TM0756 Lj3.0 Lj3.0_chr6 21783429 21783556 TM0336 Lj3.0_chr6 24123928 24124092 53.3 3.91 0.0003 10.1111/pce.12268 t34305.M000664.1 t34305.M000461.1 t34305.T000063 FT 4 flowering time QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0688 Lj3.0 Lj3.0_chr0 57607203 57607340 TM0117 Lj3.0_chr1 37875977 37876104 42 3.47 NA 10.1139/G07-040 t34305.M000633.1 t34305.M000274.1 t34305.T000064 SPO 3 seed/pod QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0050 Lj3.0 Lj3.0_chr1 20248102 20248251 TM0372 Lj3.0_chr1 23470662 23470768 11.8 3.36 NA 10.1139/G07-040 t34305.M000210.1 t34305.M000488.1 t34305.T000065 SM 3 seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0050 Lj3.0 Lj3.0_chr1 20248102 20248251 TM0372 Lj3.0_chr1 23470662 23470768 13.8 4.5 NA 10.1139/G07-040 t34305.M000210.1 t34305.M000488.1 t34305.T000066 SPO 3 seed/pod QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0012 Lj3.0 Lj3.0_chr1 55351273 55351417 TM1150 Lj3.0_chr2 21552345 21552501 37.9 6.89 NA 10.1139/G07-040 t34305.M000174.1 t34305.M000753.1 t34305.T000067 SPO 3 seed/pod QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0012 Lj3.0 Lj3.0_chr1 55351273 55351417 TM1150 Lj3.0_chr2 21552345 21552501 38.9 3.52 NA 10.1139/G07-040 t34305.M000174.1 t34305.M000753.1 t34305.T000068 FT 4 flowering time QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0113 Lj3.0 Lj3.0_chr1 38738303 38738438 TM0805 Lj3.0_chr1 42910317 42910477 51.3 5.02 NA 10.1139/G07-040 t34305.M000270.1 t34305.M000677.1 t34305.T000069 PS 4 plant shape QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0805 Lj3.0 Lj3.0_chr1 42910317 42910477 NA NA 0 0 54.2 5.81 NA 10.1139/G07-040 t34305.M000677.1 NA t34305.T000070 FD 4 flowering degree QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0222 Lj3.0 Lj3.0_chr1 46012439 46012589 TM0009 Lj3.0_chr1 49389836 49389985 63 4.56 NA 10.1139/G07-040 t34305.M000370.1 t34305.M000171.1 t34305.T000071 ST 4 stem thickness QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0295 Lj3.0 Lj3.0_chr1 52855524 52855640 NA NA 0 0 68.2 3.75 NA 10.1139/G07-040 t34305.M000426.1 NA t34305.T000072 POL 4 pod length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0122 Lj3.0 Lj3.0_chr1 58546864 58546987 TM0105 Lj3.0_chr1 61873540 61873679 72.2 4.86 NA 10.1139/G07-040 t34305.M000279.1 t34305.M000262.1 t34305.T000073 POL 4 pod length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0122 Lj3.0 Lj3.0_chr1 58546864 58546987 TM0105 Lj3.0_chr1 61873540 61873679 73.2 9.18 NA 10.1139/G07-040 t34305.M000279.1 t34305.M000262.1 t34305.T000074 SM 3 seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0122 Lj3.0 Lj3.0_chr1 58546864 58546987 TM0105 Lj3.0_chr1 61873540 61873679 73.2 7.12 NA 10.1139/G07-040 t34305.M000279.1 t34305.M000262.1 t34305.T000075 LW 4 leaf width QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0122 Lj3.0 Lj3.0_chr1 58546864 58546987 TM0105 Lj3.0_chr1 61873540 61873679 76.2 4.16 NA 10.1139/G07-040 t34305.M000279.1 t34305.M000262.1 t34305.T000076 SM 3 seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0134 Lj3.0 Lj3.0_chr2 3625302 3625437 NA NA 0 0 2.4 2.61 NA 10.1139/G07-040 t34305.M000290.1 NA t34305.T000077 SM 3 seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0074 Lj3.0 Lj3.0_chr2 7041149 7041313 TM0310 Lj3.0_chr2 11670140 11670289 9.4 7.24 NA 10.1139/G07-040 t34305.M000232.1 t34305.M000438.1 t34305.T000078 SM 3 seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0065 Lj3.0 Lj3.0_chr2 13169114 13169228 TM0400 Lj3.0_chr2 15423964 15424091 19 11.74 NA 10.1139/G07-040 t34305.M000224.1 t34305.M000504.1 t34305.T000079 SC 5 stem color QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0225 Lj3.0 Lj3.0_chr2 16495426 16495545 BM1626 Lj3.0_chr2 18310832 18310982 26 36.9 NA 10.1139/G07-040 t34305.M000373.1 t34305.M000027.1 t34305.T000080 SC 5 stem color QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0225 Lj3.0 Lj3.0_chr2 16495426 16495545 BM1626 Lj3.0_chr2 18310832 18310982 28 26.6 NA 10.1139/G07-040 t34305.M000373.1 t34305.M000027.1 t34305.T000081 LW 4 leaf width QTL analysis Miyakojima MG-20 x Gifu B-129 RIL BM1626 Lj3.0 Lj3.0_chr2 18310832 18310982 NA NA 0 0 31.1 3.38 NA 10.1139/G07-040 t34305.M000027.1 NA t34305.T000082 PS 4 plant shape QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM1150 Lj3.0 Lj3.0_chr2 21552345 21552501 TM0076 Lj3.0_chr2 22434136 22434294 41.7 3.42 NA 10.1139/G07-040 t34305.M000753.1 t34305.M000234.1 t34305.T000083 LL 4 leaf length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0080 Lj3.0 Lj3.0_chr3 6144060 6144197 TM0996 Lj3.0_chr3 11233257 11233411 18.3 4.04 NA 10.1139/G07-040 t34305.M000238.1 t34305.M000732.1 t34305.T000084 LW 4 leaf width QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0080 Lj3.0 Lj3.0_chr3 6144060 6144197 TM0996 Lj3.0_chr3 11233257 11233411 19.3 4.36 NA 10.1139/G07-040 t34305.M000238.1 t34305.M000732.1 t34305.T000085 PH 4 plant height QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0996 Lj3.0 Lj3.0_chr3 11233257 11233411 TM0190 Lj3.0_chr3 13629310 13629529 22.9 6.85 NA 10.1139/G07-040 t34305.M000732.1 t34305.M000340.1 t34305.T000086 LW 4 leaf width QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0127 Lj3.0 Lj3.0_chr3 44348170 44348301 NA NA 0 0 84.1 3.21 NA 10.1139/G07-040 t34305.M000284.1 NA t34305.T000087 SM 3 seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0126 Lj3.0 Lj3.0_chr4 19378122 19378302 NA NA 0 0 25 4.31 NA 10.1139/G07-040 t34305.M000283.1 NA t34305.T000088 SM 3 seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0087 Lj3.0 Lj3.0_chr4 24444265 24444405 NA NA 0 0 28.6 2.58 NA 10.1139/G07-040 t34305.M000245.1 NA t34305.T000089 PR 4 plant regrowth QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0555 Lj3.0 Lj3.0_chr4 33945206 33945388 TM0046 Lj3.0_chr4 35799746 35799901 53.1 3.4 NA 10.1139/G07-040 t34305.M000578.1 t34305.M000206.1 t34305.T000090 SM 3 seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0046 Lj3.0 Lj3.0_chr4 35799746 35799901 TM0266 Lj3.0_chr4 38566944 38567108 57.5 3.93 NA 10.1139/G07-040 t34305.M000206.1 t34305.M000407.1 t34305.T000091 ST 4 stem thickness QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0046 Lj3.0 Lj3.0_chr4 35799746 35799901 TM0266 Lj3.0_chr4 38566944 38567108 59.7 4.57 NA 10.1139/G07-040 t34305.M000206.1 t34305.M000407.1 t34305.T000092 SM 3 seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0266 Lj3.0 Lj3.0_chr4 38566944 38567108 TM0097 Lj3.0_chr4 41452428 41452611 65.4 3.12 NA 10.1139/G07-040 t34305.M000407.1 t34305.M000255.1 t34305.T000093 SM 3 seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0366 Lj3.0 Lj3.0_chr5 30610765 30610950 TM0710 Lj3.0_chr5 29573935 29574103 6.1 3.53 NA 10.1139/G07-040 t34305.M000482.1 t34305.M000648.1 t34305.T000094 SM 3 seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0095 Lj3.0 Lj3.0_chr5 25291632 25291802 TM0909 Lj3.0_chr5 24208865 24209009 21.6 3.52 NA 10.1139/G07-040 t34305.M000253.1 t34305.M000711.1 t34305.T000095 LL 4 leaf length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0048 Lj3.0 Lj3.0_chr5 22492896 22493058 TM0299 Lj3.0_chr5 21850837 21850951 32.8 5.77 NA 10.1139/G07-040 t34305.M000208.1 t34305.M000429.1 t34305.T000096 LL 4 leaf length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0048 Lj3.0 Lj3.0_chr5 22492896 22493058 TM0299 Lj3.0_chr5 21850837 21850951 33 3.81 NA 10.1139/G07-040 t34305.M000208.1 t34305.M000429.1 t34305.T000097 LW 4 leaf width QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0299 Lj3.0 Lj3.0_chr5 21850837 21850951 TM0186 Lj3.0_chr5 20644864 20644999 34.2 8.72 NA 10.1139/G07-040 t34305.M000429.1 t34305.M000337.1 t34305.T000098 LW 4 leaf width QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0299 Lj3.0 Lj3.0_chr5 21850837 21850951 TM0186 Lj3.0_chr5 20644864 20644999 35.2 3.68 NA 10.1139/G07-040 t34305.M000429.1 t34305.M000337.1 t34305.T000099 PH 4 plant height QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0341 Lj3.0 Lj3.0_chr5 18517193 18517309 TM0657 Lj3.0_chr5 11119564 11119695 44.8 4.57 NA 10.1139/G07-040 t34305.M000465.1 t34305.M000621.1 t34305.T000100 SPO 3 seed/pod QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0428 Lj3.0 Lj3.0_chr5 7127906 7128049 TM0034 Lj3.0_chr5 4130584 4130767 52.4 4.03 NA 10.1139/G07-040 t34305.M000519.1 t34305.M000195.1 t34305.T000101 POL 4 pod length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0034 Lj3.0 Lj3.0_chr5 4130584 4130767 TM0146 Lj3.0_chr5 581656 581803 56.6 3.76 NA 10.1139/G07-040 t34305.M000195.1 t34305.M000302.1 t34305.T000102 PS 4 plant shape QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0302 Lj3.0 Lj3.0_chr6 4957592 4957735 NA NA 0 0 13.9 3.22 NA 10.1139/G07-040 t34305.M000431.1 NA t34305.T000103 PR 4 plant regrowth QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0041 Lj3.0 Lj3.0_chr6 11873366 11873539 TM0013 Lj3.0_chr6 14155490 14155696 33.4 6.09 NA 10.1139/G07-040 t34305.M000201.1 t34305.M000175.1 t34305.T000104 PS 4 plant shape QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0041 Lj3.0 Lj3.0_chr6 11873366 11873539 TM0013 Lj3.0_chr6 14155490 14155696 37.4 4.66 NA 10.1139/G07-040 t34305.M000201.1 t34305.M000175.1 t34305.T000105 PH 4 plant height QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0756 Lj3.0 Lj3.0_chr6 21783429 21783556 TM0336 Lj3.0_chr6 24123928 24124092 52.8 6.61 NA 10.1139/G07-040 t34305.M000664.1 t34305.M000461.1 t34305.T000106 SM 3 seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0336 Lj3.0 Lj3.0_chr6 24123928 24124092 NA NA 0 0 56.7 4.37 NA 10.1139/G07-040 t34305.M000461.1 NA t34305.T000107 POL 4 pod length QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0055 Lj3.0 Lj3.0_chr6 25294502 25294649 NA NA 0 0 60.5 5.18 NA 10.1139/G07-040 t34305.M000214.1 NA t34305.T000108 Ca-7 5 Seed nutrient content(Ca) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0832 Lj3.0 Lj3.0_chr0 140451547 140451676 NA NA 0 0 8.6 4.65 NA 10.1139/G09-039 t34305.M000690.1 NA t34305.T000109 SM-2 3 Seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0832 Lj3.0 Lj3.0_chr0 140451547 140451676 NA NA 0 0 9.6 5.56 NA 10.1139/G09-039 t34305.M000690.1 NA t34305.T000110 SM-1 3 Seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0832 Lj3.0 Lj3.0_chr0 140451547 140451676 NA NA 0 0 10.6 2.99 NA 10.1139/G09-039 t34305.M000690.1 NA t34305.T000111 Cu-5 5 Seed nutrient content(Cu) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0178 Lj3.0 NA 0 0 NA NA 0 0 20.1 4.07 NA 10.1139/G09-039 t34305.M000331.1 NA t34305.T000112 [Mg]-3 5 Seed nutrient concentration([Mg]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0632 Lj3.0 NA 0 0 NA NA 0 0 23.6 3.23 NA 10.1139/G09-039 t34305.M000610.1 NA t34305.T000113 SM-4 3 Seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0632 Lj3.0 NA 0 0 NA NA 0 0 23.6 4.16 NA 10.1139/G09-039 t34305.M000610.1 NA t34305.T000114 Ca-12 5 Seed nutrient content(Ca) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0632 Lj3.0 NA 0 0 NA NA 0 0 23.6 3.46 NA 10.1139/G09-039 t34305.M000610.1 NA t34305.T000115 K-9 5 Seed nutrient content(K) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0632 Lj3.0 NA 0 0 NA NA 0 0 23.6 3.94 NA 10.1139/G09-039 t34305.M000610.1 NA t34305.T000116 [P]-3 5 Seed nutrient concentration([P]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0616 Lj3.0 NA 0 0 NA NA 0 0 69.8 4.85 NA 10.1139/G09-039 t34305.M000605.1 NA t34305.T000117 [S]-1 5 Seed nutrient concentration([S]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0088 Lj3.0 Lj3.0_chr1 217113 217274 NA NA 0 0 0 15.16 NA 10.1139/G09-039 t34305.M000246.1 NA t34305.T000118 [S]-2 5 Seed nutrient concentration([S]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0088 Lj3.0 Lj3.0_chr1 217113 217274 NA NA 0 0 0 5.61 NA 10.1139/G09-039 t34305.M000246.1 NA t34305.T000119 S-7 5 Seed nutrient content(S) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0088 Lj3.0 Lj3.0_chr1 217113 217274 NA NA 0 0 0 4.17 NA 10.1139/G09-039 t34305.M000246.1 NA t34305.T000120 S-8 5 Seed nutrient content(S) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0027 Lj3.0 Lj3.0_chr1 10871784 10871961 NA NA 0 0 0 3.6 NA 10.1139/G09-039 t34305.M000188.1 NA t34305.T000121 Mg-4 5 Seed nutrient content(Mg) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0372 Lj3.0 Lj3.0_chr1 23470662 23470768 NA NA 0 0 11.8 3.93 NA 10.1139/G09-039 t34305.M000488.1 NA t34305.T000122 [S]-3 5 Seed nutrient concentration([S]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0372 Lj3.0 Lj3.0_chr1 23470662 23470768 NA NA 0 0 17.3 4.73 NA 10.1139/G09-039 t34305.M000488.1 NA t34305.T000123 Zn-3 5 Seed nutrient content(Zn) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0193 Lj3.0 Lj3.0_chr1 26962089 26962199 NA NA 0 0 18.3 2.9 NA 10.1139/G09-039 t34305.M000343.1 NA t34305.T000124 Ca-3 5 Seed nutrient content(Ca) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0386 Lj3.0 Lj3.0_chr1 28671291 28671431 NA NA 0 0 21.7 2.79 NA 10.1139/G09-039 t34305.M000497.1 NA t34305.T000125 [Fe]-1 5 Seed nutrient concentration([Fe]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0101 Lj3.0 Lj3.0_chr1 30019246 30019380 NA NA 0 0 24.4 4.41 NA 10.1139/G09-039 t34305.M000259.1 NA t34305.T000126 [Mn]-1 5 Seed nutrient concentration([Mn]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0101 Lj3.0 Lj3.0_chr1 30019246 30019380 NA NA 0 0 24.4 5.39 NA 10.1139/G09-039 t34305.M000259.1 NA t34305.T000127 [Zn]-1 5 Seed nutrient concentration([Zn]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0101 Lj3.0 Lj3.0_chr1 30019246 30019380 NA NA 0 0 24.4 6.5 NA 10.1139/G09-039 t34305.M000259.1 NA t34305.T000128 Fe-4 5 Seed nutrient content(Fe) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0101 Lj3.0 Lj3.0_chr1 30019246 30019380 NA NA 0 0 24.4 3.42 NA 10.1139/G09-039 t34305.M000259.1 NA t34305.T000129 [Fe]-2 5 Seed nutrient concentration([Fe]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM1635 Lj3.0 Lj3.0_chr1 31690752 31690891 NA NA 0 0 28.1 2.87 NA 10.1139/G09-039 t34305.M000863.1 NA t34305.T000130 [Cu]-1 5 Seed nutrient concentration([Cu]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0051 Lj3.0 NA 0 0 NA NA 0 0 29.3 5.97 NA 10.1139/G09-039 t34305.M000211.1 NA t34305.T000131 [Cu]-2 5 Seed nutrient concentration([Cu]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0051 Lj3.0 NA 0 0 NA NA 0 0 29.3 3.38 NA 10.1139/G09-039 t34305.M000211.1 NA t34305.T000132 [K]-1 5 Seed nutrient concentration([K]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0051 Lj3.0 NA 0 0 NA NA 0 0 29.3 3.39 NA 10.1139/G09-039 t34305.M000211.1 NA t34305.T000133 [S]-4 5 Seed nutrient concentration([S]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0051 Lj3.0 NA 0 0 NA NA 0 0 29.3 4.25 NA 10.1139/G09-039 t34305.M000211.1 NA t34305.T000134 Ca-4 5 Seed nutrient content(Ca) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM1168 Lj3.0 Lj3.0_chr1 34755807 34755930 NA NA 0 0 31.3 3.01 NA 10.1139/G09-039 t34305.M000754.1 NA t34305.T000135 Ca-5 5 Seed nutrient content(Ca) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0113 Lj3.0 Lj3.0_chr1 38738303 38738438 NA NA 0 0 46.6 5.6 NA 10.1139/G09-039 t34305.M000270.1 NA t34305.T000136 Mg-5 5 Seed nutrient content(Mg) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0805 Lj3.0 Lj3.0_chr1 42910317 42910477 NA NA 0 0 49.5 3.63 NA 10.1139/G09-039 t34305.M000677.1 NA t34305.T000137 Ca-6 5 Seed nutrient content(Ca) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0222 Lj3.0 Lj3.0_chr1 46012439 46012589 NA NA 0 0 50.5 2.82 NA 10.1139/G09-039 t34305.M000370.1 NA t34305.T000138 S-9 5 Seed nutrient content(S) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0122 Lj3.0 Lj3.0_chr1 58546864 58546987 NA NA 0 0 67.2 5.22 NA 10.1139/G09-039 t34305.M000279.1 NA t34305.T000139 [Ca]-1 5 Seed nutrient concentration([Ca]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0105 Lj3.0 Lj3.0_chr1 61873540 61873679 NA NA 0 0 71 3.25 NA 10.1139/G09-039 t34305.M000262.1 NA t34305.T000140 Cu-6 5 Seed nutrient content(Cu) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0105 Lj3.0 Lj3.0_chr1 61873540 61873679 NA NA 0 0 71 2.71 NA 10.1139/G09-039 t34305.M000262.1 NA t34305.T000141 K-3 5 Seed nutrient content(K) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0105 Lj3.0 Lj3.0_chr1 61873540 61873679 NA NA 0 0 71 6.16 NA 10.1139/G09-039 t34305.M000262.1 NA t34305.T000142 Mg-6 5 Seed nutrient content(Mg) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0105 Lj3.0 Lj3.0_chr1 61873540 61873679 NA NA 0 0 71 4.81 NA 10.1139/G09-039 t34305.M000262.1 NA t34305.T000143 [P]-1 5 Seed nutrient concentration([P]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0134 Lj3.0 Lj3.0_chr2 3625302 3625437 NA NA 0 0 3.2 3.05 NA 10.1139/G09-039 t34305.M000290.1 NA t34305.T000144 K-4 5 Seed nutrient content(K) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0134 Lj3.0 Lj3.0_chr2 3625302 3625437 NA NA 0 0 3.2 6.25 NA 10.1139/G09-039 t34305.M000290.1 NA t34305.T000145 Mg-7 5 Seed nutrient content(Mg) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0134 Lj3.0 Lj3.0_chr2 3625302 3625437 NA NA 0 0 3.2 5.67 NA 10.1139/G09-039 t34305.M000290.1 NA t34305.T000146 Alloc-1 2 Seed allocation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0134 Lj3.0 Lj3.0_chr2 3625302 3625437 NA NA 0 0 4.2 4.19 NA 10.1139/G09-039 t34305.M000290.1 NA t34305.T000147 Mg-8 5 Seed nutrient content(Mg) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0134 Lj3.0 Lj3.0_chr2 3625302 3625437 NA NA 0 0 4.2 5.22 NA 10.1139/G09-039 t34305.M000290.1 NA t34305.T000148 S-10 5 Seed nutrient content(S) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0134 Lj3.0 Lj3.0_chr2 3625302 3625437 NA NA 0 0 4.2 3.3 NA 10.1139/G09-039 t34305.M000290.1 NA t34305.T000149 Zn-4 5 Seed nutrient content(Zn) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0134 Lj3.0 Lj3.0_chr2 3625302 3625437 NA NA 0 0 5.2 4.24 NA 10.1139/G09-039 t34305.M000290.1 NA t34305.T000150 [Ca]-2 5 Seed nutrient concentration([Ca]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0074 Lj3.0 Lj3.0_chr2 7041149 7041313 NA NA 0 0 6.2 2.73 NA 10.1139/G09-039 t34305.M000232.1 NA t34305.T000151 K-5 5 Seed nutrient content(K) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0074 Lj3.0 Lj3.0_chr2 7041149 7041313 NA NA 0 0 6.2 2.91 NA 10.1139/G09-039 t34305.M000232.1 NA t34305.T000152 [Mn]-2 5 Seed nutrient concentration([Mn]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0383 Lj3.0 Lj3.0_chr2 7494969 7495079 NA NA 0 0 8.4 5.8 NA 10.1139/G09-039 t34305.M000496.1 NA t34305.T000153 [K]-1 5 Seed nutrient concentration([K]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0053 Lj3.0 Lj3.0_chr2 10514220 10514399 NA NA 0 0 9.6 3.27 NA 10.1139/G09-039 t34305.M000213.1 NA t34305.T000154 [Ni]-1 5 Seed nutrient concentration([Ni]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0660 Lj3.0 Lj3.0_chr2 12827782 12827969 NA NA 0 0 12.8 3.24 NA 10.1139/G09-039 t34305.M000622.1 NA t34305.T000155 [Ni]-2 5 Seed nutrient concentration([Ni]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL BM1626 Lj3.0 Lj3.0_chr2 18310832 18310982 NA NA 0 0 30.8 4.11 NA 10.1139/G09-039 t34305.M000027.1 NA t34305.T000156 [Ni]-3 5 Seed nutrient concentration([Ni]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0793 Lj3.0 Lj3.0_chr3 564251 564408 NA NA 0 0 0 3.91 NA 10.1139/G09-039 t34305.M000671.1 NA t34305.T000157 Mg-9 5 Seed nutrient content(Mg) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0080 Lj3.0 Lj3.0_chr3 6144060 6144197 NA NA 0 0 16.5 3.71 NA 10.1139/G09-039 t34305.M000238.1 NA t34305.T000158 [Ni]-4 5 Seed nutrient concentration([Ni]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0996 Lj3.0 Lj3.0_chr3 11233257 11233411 NA NA 0 0 19.5 4.45 NA 10.1139/G09-039 t34305.M000732.1 NA t34305.T000159 [Cu]-3 5 Seed nutrient concentration([Cu]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0035 Lj3.0 Lj3.0_chr3 14526694 14526804 NA NA 0 0 29.8 3.65 NA 10.1139/G09-039 t34305.M000196.1 NA t34305.T000160 [Cu]-4 5 Seed nutrient concentration([Cu]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0083 Lj3.0 Lj3.0_chr3 25069136 25069297 NA NA 0 0 37.8 3.24 NA 10.1139/G09-039 t34305.M000241.1 NA t34305.T000161 Ni-6 5 Seed nutrient content(Ni) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0203 Lj3.0 Lj3.0_chr3 35756119 35756270 NA NA 0 0 64.1 2.78 NA 10.1139/G09-039 t34305.M000352.1 NA t34305.T000162 S-11 5 Seed nutrient content(S) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0203 Lj3.0 Lj3.0_chr3 35756119 35756270 NA NA 0 0 64.1 3.94 NA 10.1139/G09-039 t34305.M000352.1 NA t34305.T000163 [Ni]-5 5 Seed nutrient concentration([Ni]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0203 Lj3.0 Lj3.0_chr3 35756119 35756270 NA NA 0 0 64.8 5.19 NA 10.1139/G09-039 t34305.M000352.1 NA t34305.T000164 [P]-2 5 Seed nutrient concentration([P]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0203 Lj3.0 Lj3.0_chr3 35756119 35756270 NA NA 0 0 67.8 4.13 NA 10.1139/G09-039 t34305.M000352.1 NA t34305.T000165 Alloc-2 2 Seed allocation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0127 Lj3.0 Lj3.0_chr3 44348170 44348301 NA NA 0 0 82.4 3.26 NA 10.1139/G09-039 t34305.M000284.1 NA t34305.T000166 Ca-8 5 Seed nutrient content(Ca) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0330 Lj3.0 Lj3.0_chr4 12094828 12094994 NA NA 0 0 16 2.91 NA 10.1139/G09-039 t34305.M000455.1 NA t34305.T000167 P-6 5 Seed nutrient content(P) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0194 Lj3.0 Lj3.0_chr4 13253314 13253436 NA NA 0 0 19.3 3.95 NA 10.1139/G09-039 t34305.M000344.1 NA t34305.T000168 S-12 5 Seed nutrient content(S) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0194 Lj3.0 Lj3.0_chr4 13253314 13253436 NA NA 0 0 19.3 3.32 NA 10.1139/G09-039 t34305.M000344.1 NA t34305.T000169 S-13 5 Seed nutrient content(S) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0194 Lj3.0 Lj3.0_chr4 13253314 13253436 NA NA 0 0 19.3 3.51 NA 10.1139/G09-039 t34305.M000344.1 NA t34305.T000170 Ca-9 5 Seed nutrient content(Ca) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0194 Lj3.0 Lj3.0_chr4 13253314 13253436 NA NA 0 0 20.3 3.22 NA 10.1139/G09-039 t34305.M000344.1 NA t34305.T000171 K-6 5 Seed nutrient content(K) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0194 Lj3.0 Lj3.0_chr4 13253314 13253436 NA NA 0 0 21.3 3.11 NA 10.1139/G09-039 t34305.M000344.1 NA t34305.T000172 Ca-10 5 Seed nutrient content(Ca) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0126 Lj3.0 Lj3.0_chr4 19378122 19378302 NA NA 0 0 27 5.11 NA 10.1139/G09-039 t34305.M000283.1 NA t34305.T000173 [Mg]-1 5 Seed nutrient concentration([Mg]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0555 Lj3.0 Lj3.0_chr4 33945206 33945388 NA NA 0 0 47.5 3.22 NA 10.1139/G09-039 t34305.M000578.1 NA t34305.T000174 [Fe]-3 5 Seed nutrient concentration([Fe]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0555 Lj3.0 Lj3.0_chr4 33945206 33945388 NA NA 0 0 51 3.96 NA 10.1139/G09-039 t34305.M000578.1 NA t34305.T000175 K-7 5 Seed nutrient content(K) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0266 Lj3.0 Lj3.0_chr4 38566944 38567108 NA NA 0 0 59.4 4.27 NA 10.1139/G09-039 t34305.M000407.1 NA t34305.T000176 [Zn]-2 5 Seed nutrient concentration([Zn]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0048 Lj3.0 Lj3.0_chr5 22492896 22493058 NA NA 0 0 29.6 3.19 NA 10.1139/G09-039 t34305.M000208.1 NA t34305.T000177 [Mg]-2 5 Seed nutrient concentration([Mg]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0849 Lj3.0 Lj3.0_chr5 23293667 23293779 NA NA 0 0 31.6 3.62 NA 10.1139/G09-039 t34305.M000697.1 NA t34305.T000178 S-14 5 Seed nutrient content(S) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0849 Lj3.0 Lj3.0_chr5 23293667 23293779 NA NA 0 0 32.6 3.71 NA 10.1139/G09-039 t34305.M000697.1 NA t34305.T000179 Ca-11 5 Seed nutrient content(Ca) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0722 Lj3.0 Lj3.0_chr6 2169061 2169185 NA NA 0 0 4.1 5.28 NA 10.1139/G09-039 t34305.M000653.1 NA t34305.T000180 [S]-6 5 Seed nutrient concentration([S]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0014 Lj3.0 Lj3.0_chr6 3760058 3760216 NA NA 0 0 6.1 3.54 NA 10.1139/G09-039 t34305.M000176.1 NA t34305.T000181 Zn-5 5 Seed nutrient content(Zn) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0302 Lj3.0 Lj3.0_chr6 4957592 4957735 NA NA 0 0 12.7 2.89 NA 10.1139/G09-039 t34305.M000431.1 NA t34305.T000182 SM-3 3 Seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0245 Lj3.0 Lj3.0_chr6 7307225 7307364 NA NA 0 0 20.8 5.35 NA 10.1139/G09-039 t34305.M000390.1 NA t34305.T000183 K-8 5 Seed nutrient content(K) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0245 Lj3.0 Lj3.0_chr6 7307225 7307364 NA NA 0 0 20.8 5.41 NA 10.1139/G09-039 t34305.M000390.1 NA t34305.T000184 S-15 5 Seed nutrient content(S) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0245 Lj3.0 Lj3.0_chr6 7307225 7307364 NA NA 0 0 20.8 4.59 NA 10.1139/G09-039 t34305.M000390.1 NA t34305.T000185 Fe-5 5 Seed nutrient content(Fe) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM1091 Lj3.0 Lj3.0_chr6 8844127 8844286 NA NA 0 0 25.4 3.28 NA 10.1139/G09-039 t34305.M000748.1 NA t34305.T000186 Mg-10 5 Seed nutrient content(Mg) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM1091 Lj3.0 Lj3.0_chr6 8844127 8844286 NA NA 0 0 25.4 3.44 NA 10.1139/G09-039 t34305.M000748.1 NA t34305.T000187 P-7 5 Seed nutrient content(P) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0821 Lj3.0 Lj3.0_chr6 9169214 9169396 NA NA 0 0 27 3.9 NA 10.1139/G09-039 t34305.M000684.1 NA t34305.T000188 P-8 5 Seed nutrient content(P) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0821 Lj3.0 Lj3.0_chr6 9169214 9169396 NA NA 0 0 27 3.46 NA 10.1139/G09-039 t34305.M000684.1 NA t34305.T000189 Alloc-3 2 Seed allocation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0331 Lj3.0 Lj3.0_chr6 10106216 10106346 NA NA 0 0 31.6 8.45 NA 10.1139/G09-039 t34305.M000456.1 NA t34305.T000190 Alloc-4 2 Seed allocation QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0041 Lj3.0 Lj3.0_chr6 11873366 11873539 NA NA 0 0 32.5 3.77 NA 10.1139/G09-039 t34305.M000201.1 NA t34305.T000191 [P]-4 5 Seed nutrient concentration([P]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0880 Lj3.0 Lj3.0_chr6 16717630 16717805 NA NA 0 0 41.7 5.53 NA 10.1139/G09-039 t34305.M000705.1 NA t34305.T000192 P-9 5 Seed nutrient content(P) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0880 Lj3.0 Lj3.0_chr6 16717630 16717805 NA NA 0 0 42.7 5.15 NA 10.1139/G09-039 t34305.M000705.1 NA t34305.T000193 [S]-5 5 Seed nutrient concentration([S]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM1417 Lj3.0 Lj3.0_chr6 1055655 1055825 NA NA 0 0 42.9 5.14 NA 10.1139/G09-039 t34305.M000801.1 NA t34305.T000194 [P]-5 5 Seed nutrient concentration([P]) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0756 Lj3.0 Lj3.0_chr6 21783429 21783556 NA NA 0 0 51.9 2.87 NA 10.1139/G09-039 t34305.M000664.1 NA t34305.T000195 P-10 5 Seed nutrient content(P) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0756 Lj3.0 Lj3.0_chr6 21783429 21783556 NA NA 0 0 56.9 6.12 NA 10.1139/G09-039 t34305.M000664.1 NA t34305.T000196 S-16 5 Seed nutrient content(S) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0756 Lj3.0 Lj3.0_chr6 21783429 21783556 NA NA 0 0 56.9 5.27 NA 10.1139/G09-039 t34305.M000664.1 NA t34305.T000197 SM-5 3 Seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0336 Lj3.0 Lj3.0_chr6 24123928 24124092 NA NA 0 0 57.6 3.58 NA 10.1139/G09-039 t34305.M000461.1 NA t34305.T000198 SM-6 3 Seed mass QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0336 Lj3.0 Lj3.0_chr6 24123928 24124092 NA NA 0 0 57.6 4.12 NA 10.1139/G09-039 t34305.M000461.1 NA t34305.T000199 K-10 5 Seed nutrient content(K) QTL analysis Miyakojima MG-20 x Gifu B-129 RIL TM0055 Lj3.0 Lj3.0_chr6 25294502 25294649 NA NA 0 0 60.6 3.6 NA 10.1139/G09-039 t34305.M000214.1 NA