marker_id species_id marker_name sub_number marker_type mapped_genome_id reference_seq_name chr fwd_primer_seq fwd_primer_start_pos fwd_primer_end_pos rev_primer_seq rev_primer_start_pos rev_primer_end_pos target_seq target_chr target_start_pos target_end_pos allele enzyme comments doi pubmed f_active assembly_version t3880.M000115.1 t3880 MtBtol-1 1 CAPS t3880.G001 v4 chr4 TTGAACTACGATCAGGGTCGTTCCTA 777035 777060 CTCTTTACCTCCCCCTCCTG 777421 777402 NA 170+217 bp [Caliph]; 170+217 bp [Paraggio]; 387 bp [tap (mutant derived from Jemalong A17)] ApoI 10.1186/1471-2229-13-54 23531152 1 JCVI.Medtr.v4.20130313 t3880.M000224.1 t3880 G3H 1 CAPS t3880.G001 v4 chr2 TAACCACAAGCACCCTGATTTCA 44199015 44199037 TCCCTGCTAACTTTTTCATGGCT 44200044 44200022 NA 232+91 bp [DZA315.16]; 323+232+91 bp [Jemalong-6] MboII 10.1007/s00122-007-0525-1 17375280 1 JCVI.Medtr.v4.20130313 t3880.M000228.1 t3880 PEPC 1 CAPS t3880.G001 v4 chr2 CTCATCCTACTCAGTCGGTTCGTCG 32095239 32095263 ACACGTAGCTCATCGTTGCAACGCC 32096137 32096113 NA 200+250+360 bp [DZA315.16]; 125+200+250 bp [Jemalong-6] RsaI 10.1007/s00122-007-0525-1 17375280 1 JCVI.Medtr.v4.20130313 t3880.M000229.1 t3880 Rms1 1 CAPS t3880.G001 v4 chr3 CTATGCTTGTGGAGCACAGCG 51271148 51271168 TTACTGTTTTGGAACCCAACA 51271624 51271604 NA 417 bp [DZA315.26]; 171+246 bp [DZA45.5] HaeIII 10.1007/s00122-007-0525-1 17375280 1 JCVI.Medtr.v4.20130313 t3880.M000279.1 t3880 mtic512 1 CAPS t3880.G001 v4 chr5 tgatccttcacaaatcaaacca 14419398 14419419 aattctcaccatgccatcaa 14419746 14419727 NA NA MlyI 10.1111/nph.12299 23638965 1 JCVI.Medtr.v4.20130313 t3880.M000335.1 t3880 MtChr7 1 CAPS t3880.G001 v4 chr7 TTGGAGCATTTATACCAGCAA 45079372 45079392 TTGTATGCATCGGAGACTGC 45079677 45079658 NA 84+222 bp [Caliph]; 84+222 bp [Paraggio]; 306 bp [tap (mutant derived from Jemalong A17)] NlaIII 10.1186/1471-2229-13-54 23531152 1 JCVI.Medtr.v4.20130313 t3880.M000339.1 t3880 ENOD8 1 CAPS t3880.G001 v4 chr1 ATGGTGCAAACTTCGCATCAGGAGG 10508171 10508195 ACAACCCTTTGGTCCTGTGCCGTG 10508782 10508759 NA NA SspI 10.1186/1471-2229-2-1 11825338 1 JCVI.Medtr.v4.20130313 t3880.M000350.1 t3880 11B2R 1 CAPS t3880.G001 v4 chr6 AATCTTTCTAGCCAATGTAAATCTTCAAT 33399207 33399235 TTTGCGAAAATTGGATCTAATGGGTTC 33399677 33399651 NA 414 bp [A17]; 192+222 bp [A20] BglII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000357.1 t3880 MtPT-1 1 CAPS t3880.G001 v4 chr1 TTGCTAAGAACCCGAAACAAGCTGC 16184518 16184542 ATGTTCATGATCCTTCTTGCTCAAGC 16185415 16185390 NA NA RsaI 10.1186/1471-2229-2-1 11825338 1 JCVI.Medtr.v4.20130313 t3880.M000360.1 t3880 PEPC 1 CAPS t3880.G001 v4 chr2 CTCATCCTACTCAGTCGGTTCGTCG 32095239 32095263 ACACGTAGCTCATCGTTGCAACGCC 32096137 32096113 NA NA RsaI 10.1186/1471-2229-2-1 11825338 1 JCVI.Medtr.v4.20130313 t3880.M000366.1 t3880 Lb I 1 CAPS t3880.G001 v4 chr5 CCTGTTGCTCGAAGTTGAGA 27841282 27841301 GATAGTCCTCAACTCCAAGC 27842451 27842432 NA NA SspI 10.1186/1471-2229-2-1 11825338 1 JCVI.Medtr.v4.20130313 t3880.M000368.1 t3880 ENOD40 1 CAPS t3880.G001 v4 chr5 GCCTCCGATTATCAAAGGTCAAG 14581452 14581474 TTAGTAGGATCTTCTCTTTCACTAGC 14581892 14581867 NA NA AluI 10.1186/1471-2229-2-1 11825338 1 JCVI.Medtr.v4.20130313 t3880.M000372.1 t3880 VR 1 CAPS t3880.G001 v4 chr7 GAGTGTGTGTAACTGGAGGTACAGG 27943571 27943595 ATGCCTAATGCGCCATCGACGGTTC 27944610 27944586 NA NA DdeI 10.1186/1471-2229-2-1 11825338 1 JCVI.Medtr.v4.20130313 t3880.M000831.1 t3880 11O9L 1 CAPS t3880.G001 v4 chr3 TATAGACTTAGCCCTCAAAGTATTTCCC 13359367 13359394 CATGGCATCCAGATCCCACAT 13359559 13359539 NA 197 bp [A17]; 42+155 bp [A20] SspI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000833.1 t3880 15J11L 1 CAPS t3880.G001 v4 chr1 GTGCCCCGCCCCTTTATT 821848 821865 TGCAAATAGGCCCCATCC 822106 822089 NA 190+72 bp [A17]; 262 bp [A20] DdeI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000834.1 t3880 15L4R 1 CAPS t3880.G001 v4 chr6 GTTTTAGTTTACCATGACTTTGCTCCTCT 26979091 26979119 AAATTTTAGAGACCTGAGACATTGGG 26979661 26979636 NA 155+363 bp [A17]; 518 bp [A20] XmnI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000836.1 t3880 18D24R 1 CAPS t3880.G001 v4 chr3 GGATGAAAACAGAGAACCGTGAAACAC 5330831 5330857 CAATCCTGATCTACTTAACCAAAATAACAGC 5331156 5331126 NA 211+82 bp [A17]; 293 bp [A20] SspI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000838.1 t3880 19D7L 1 CAPS t3880.G001 v4 chr5 CAATCGTGGTCTCTGAACATATTTGG 15436320 15436345 AATTTCTTCCATTTGTCTTGTTTTGAA 15436583 15436557 NA 212+49 bp [A17]; 261 bp [A20] ClaI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000839.1 t3880 19F14R 1 CAPS t3880.G001 v4 chr3 AACCTATTGCCTTTGTATTTTGAGATGG 8588540 8588567 AAGCTTACCTGATACCATTTGTATGTTGTA 8589013 8588984 NA 157+318 bp [A17]; 463 bp [A20] BfaI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000840.1 t3880 19L13L 1 CAPS t3880.G001 v4 chr3 TGTGTACAACAACAACAAGATAGAGGAACATT 6479539 6479570 CCATGGTTAAATGGAAGTAGTAACTGCTCC 6479796 6479767 NA 113+135 bp [A17]; 248 bp [A20] MboI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000841.1 t3880 19O4L 1 CAPS t3880.G001 v4 chr6 GGGAATGATAATGGTATGTGATATGAAAATG 28179729 28179759 CTATGCCAGACTGCCTCCAATGT 28180199 28180177 NA 297+138 bp [A17]; 435 bp [A20] HindIII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000842.1 t3880 1E19L 1 CAPS t3880.G001 v4 chr6 ACCCGGTGCGAATGTAATGA 26819027 26819046 GCAATGCTTGCCAGAACTCCA 26819360 26819340 NA 325 bp [A17]; 136+145 bp [A20] AlwI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000843.1 t3880 1N1R 1 CAPS t3880.G001 v4 chr2 CATATTGTTAGATTTGTGG 1240269 1240287 GTGAGCGTTAAGTTGGTAGAG 1240752 1240732 NA 500 bp [A17]; 200+300 bp [A20] BsmAI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000844.1 t3880 21L20L 1 CAPS t3880.G001 v4 chr5 AGGTGGAAAAACCCAACGAGAATA 17922546 17922569 CTGCAAATAAACCCTCTAGAAAAGTCTG 17922843 17922816 NA 292 bp [A17]; 105+187 bp [A20] BsrI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000846.1 t3880 24D15R 1 CAPS t3880.G001 v4 chr3 AATAATTGACGAGCTACCAGCATATG 5170878 5170903 TGGATTTGAATGTGATCTTTTGATTAA 5171133 5171107 NA 180+70 bp [A17]; 250 bp [A20] HpaII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000847.1 t3880 25A23L 1 CAPS t3880.G001 v4 chr4 TTTTATTTCGCGTTGTTTATTTGATTC 31533033 31533059 ACGCGCAGCAGCCATCC 31533437 31533421 NA 76+304 bp [A17]; 76+59+244 bp [A20] NlaIII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000849.1 t3880 26G3L 1 CAPS t3880.G001 v4 chr3 TGGGGTTAGATTTTAGTTACATGTTTGACACA 6996208 6996239 TTCTGACCAATCCGAAGAGCAGTGA 6996598 6996574 NA 116+268 bp [A17]; 384 bp [A20] RsaI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000850.1 t3880 2M10L 1 CAPS t3880.G001 v4 chr8 AAGTTAATGATTTTTCACTTGCAGAATAAG 11496650 11496679 TATTTGCTCCTAGTTTTGGGTCAAG 11496945 11496921 NA 282 bp [A17]; 152+130 bp [A20] DraIII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000851.1 t3880 2M10R 1 CAPS t3880.G001 v4 chr8 ACAAAGGGTCTGGGCGATGA 11417522 11417541 CACCCTGATTTCCCGCAAGTGA 11417787 11417766 NA 78+183 bp [A17]; 78+61+122 bp [A20] NlaIII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000853.1 t3880 34D20L 1 CAPS t3880.G001 v4 chr5 CTGTTTTGCACTGATATTGTTAGGAAGA 17924049 17924076 TGCTATACAGAAAAGAGGTGGTGATTATA 17924292 17924264 NA 50+200 bp [A17]; 250 bp [A20] HpaII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000854.1 t3880 36N1L 1 CAPS t3880.G001 v4 chr6 GAAGCAGCCGGACATTGGACACA 9153473 9153495 TGTTAGTTCAAATGGATCTTCTATGAGGTAT 9153875 9153845 NA 277+129 bp [A17]; 406 bp [A20] BglII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000855.1 t3880 38K1L 1 CAPS t3880.G001 v4 chr3 GGCTGGTATGAAAGAAGAGCAGAA 10332045 10332068 AGTTTAAATAAGGACCAGGATGTTCG 10332296 10332271 NA 39+210 bp [A17]; 249 bp [A20] AflII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000856.1 t3880 3F12R 1 CAPS t3880.G001 v4 chr6 CCAGAATTCTTCGGTTGATGATGTTTTG 33027844 33027871 ATAAGGGGTGAACTAATTGTGATGACTCTTGA 33028226 33028195 NA 178+207 bp [A17]; 385 bp [A20] NA 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000858.1 t3880 3N6L 1 CAPS t3880.G001 v4 chr8 AAGAGACTTAAGAATTTTCGATGGGATGC 14276390 14276418 ACTTGGGTTGGTCTGATGGTGCTG 14276614 14276591 NA 154+73 bp [A17]; 227 bp [A20] XhoI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000859.1 t3880 40H12L 1 CAPS t3880.G001 v4 chr8 GAGCTGGAAGGTTTATATAAATATCTGCCC 11476126 11476155 AAGAGAAATGAATTGTCTTATGTCTGTGTGTG 11476424 11476393 NA 280 bp [A17]; 152+128 bp [A20] BsrI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000860.1 t3880 40L12R 1 CAPS t3880.G001 v4 chr3 ATCCAAATCCCATCTCCAACAGG 6868583 6868605 ATGACATACTTCAAGAAATAAACCACCAG 6868888 6868860 NA 302 bp [A17]; 96+206 bp [A20] NlaIII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000861.1 t3880 41F23L 1 CAPS t3880.G001 v4 chr5 TCGCAATTGCAACTTGTCCAC 15353752 15353772 CCCCCGCATGTAAGGATGTT 15353955 15353936 NA 195 bp [A17]; 103+92 bp [A20] BsmAI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000862.1 t3880 41O18L 1 CAPS t3880.G001 v4 chr8 AATACCCTTCCCTTTCCTTCCC 44967298 44967319 AGATATATCAGAAAAAACTAACCCAACCTT 44967567 44967538 NA 268 bp [A17]; 167+101 bp [A20] AluI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000864.1 t3880 43I21L 1 CAPS t3880.G001 v4 chr4 GCTTTTGTTTTAATGCATTTCTTAGTGTTTC 7082135 7082165 TGGAGCCTCATGTGTTTCAAACG 7082565 7082543 NA 147+232+45 bp [A17]; 45+379 bp [A20] NlaIV 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000865.1 t3880 44D11L 1 CAPS t3880.G001 v4 chr6 TCTTACAAACTACAATATCACAGAGGACTAAA 25042902 25042933 CCAAAATTATTATCATTTGGTTAGCATTA 25043378 25043351 NA 481 bp [A17]; 170+311 bp [A20] AseI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000866.1 t3880 48N18L 1 CAPS t3880.G001 v4 chr6 TCTTTTCCTCCGATTTCTTGATTCTC 9127434 9127459 AGGCTTGCTTGCTGTTGGTTGTA 9127994 9127972 NA 510 bp [A17]; 130+380 bp [A20] BsmAI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000869.1 t3880 5J9L 1 CAPS t3880.G001 v4 chr3 TCCTTTGGGAAGAATGGTAGAGG 8840992 8841014 CTCTGAAGAAGTATTTTCCTTCCTTGAC 8841332 8841305 NA 359 bp [A17]; 235+124 bp [A20] HinfI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000870.1 t3880 6M23L 1 CAPS t3880.G001 v4 chr3 TTAATGTTAGAGATTGAAGGTGAGAGAAAC 13494679 13494708 GTTAGTTTACCACTTTTGAGTAGTGTAAGCAC 13494993 13494962 NA 50+265 bp [A17]; 170+95+50 bp [A20] MseI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000871.1 t3880 74O5R 1 CAPS t3880.G001 v4 chr3 AGTTCATTACTTGATTAGCACACTTGTACA 6292722 6292751 AGTCTAGAATGGAACACGTTGTTTCG 6292951 6292926 NA 228 bp [A17]; 131+97 bp [A20] ClaI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000872.1 t3880 75D1L 1 CAPS t3880.G001 v4 chr4 TGTGGTATCATTAGTCCTTCTCATCAGG 17879018 17879045 AAGCTTCCAATGATAGATGATCGTAGA 17879296 17879270 NA 220+43 bp [A17]; 263 bp [A20] NlaIII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000875.1 t3880 79P21R 1 CAPS t3880.G001 v4 chr6 GCTACTGCAACGTTCCCTCTCACAG 33271719 33271743 TCTAAATATGCGTGGTTGTTCTAAAGTGTT 33272232 33272203 NA 211+298 bp [A17]; 211+87+200 bp [A20] DdeI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000877.1 t3880 7H15L 1 CAPS t3880.G001 v4 chr5 TTTCATCTTCTGCCTCATTTGGTC 16403772 16403795 GCCTATGGAGGTGAGGATTTGG 16404078 16404057 NA 30+250 bp [A17]; 280 bp [A20] AluI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000878.1 t3880 8C10R 1 CAPS t3880.G001 v4 chr6 TCTCGGGTGGTGATGATGACTCTG 27676722 27676745 TGCAGTCTCGAGTACAACAAATGAAAT 27677133 27677107 NA 387 bp [A17]; 243+168 bp [A20] NA 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000879.1 t3880 AA661025 1 CAPS t3880.G001 v4 chr8 CAAACCATACTTAAGCAAACCTACAATGC 14831150 14831178 CTTCGGACCTTCAGCAAAACACAG 14831833 14831810 NA 351+277 bp [A17]; 628 bp [A20] EcoRV 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000880.1 t3880 AAT 1 CAPS t3880.G001 v4 chr5 TCCGACATTAGGATCATCAAGTAGG 14335872 14335896 TGCTTCACGATGCCACCAA 14336859 14336841 NA 500+500 bp [A17]; 300+200+500 bp [A20] ApoI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000884.1 t3880 AI974451 1 CAPS t3880.G001 v4 chr8 CGATGGGTTTTTCCAGTTTTCTATTACA 14794724 14794751 GCAACAAGAGTCAAATTCAGTTCCA 14795714 14795690 NA 470 bp [A17]; 400+70 bp [A20] HphI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000888.1 t3880 APX 1 CAPS t3880.G001 v4 chr4 GCTTTGCCAAACACATCCCTC 22581789 22581809 ATCTTCGCCATTTTCCTTCTTAG 22583553 22583531 NA 2000 bp [A17]; 650+1350 bp [A20] SpeI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000889.1 t3880 APYR1 1 CAPS t3880.G001 v4 chr7 AACCCTTGCCTTTTGGCTGGATTTGATGG 32912218 32912246 TCTGAAATTATCATAGCCGAAATAGTGTG 32912351 32912323 NA 95+38 bp [A17]; 143 bp [A20] AluI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000895.1 t3880 AW125982 1 CAPS t3880.G001 v4 chr5 CCTTACCAGGTCTGGCAACTTCTCTAATATC 16413063 16413093 GCTTCAACCTCATTCCCAACAACTTC 16413360 16413335 NA 133+166 bp [A17]; 299 bp [A20] MboII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000896.1 t3880 AW256557 1 CAPS t3880.G001 v4 chr1 TGCTTCATCCCACTTATCATCAATACC 51910947 51910973 GATATTTTCATTACTCAGCAACTTTTTCACAG 51911279 51911248 NA 334 bp [A17]; 300+34 bp [A20] AlwNI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000897.1 t3880 AW256637 1 CAPS t3880.G001 v4 chr4 TATTTGTTAGCTTTAGTGATCGCTGCTACAC 6593836 6593864 TTCACCTAATTTCCATCTATACCATCCATGT 6594359 6594329 NA 525 bp [A17]; 404+121 bp [A20] ScaI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000898.1 t3880 AW256656 1 CAPS t3880.G001 v4 chr8 CCCAGACAACATTTCCTTACTATCGTCA 32635376 32635403 CCAAGTAGTAGGCAAAACCCAACAAATT 32635874 32635847 NA 505 bp [A17]; 190+315 bp [A20] BsmAI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000899.1 t3880 AW257033 1 CAPS t3880.G001 v4 chr8 TGCGTCATTAACCAAAGATGATGTTGTAA 2989557 2989585 CCAACAGTAACATCCCCAAAGACAATATTC 2989868 2989839 NA 314 bp [A17]; 260+54 bp [A20] MboII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000906.1 t3880 AW736703 1 CAPS t3880.G001 v4 chr3 AGCAAGGTATTCAACTTCTTTTCATCTT 4388162 4388189 GCAAATATTTCTTACCAGTTAGTTTGTGC 4388681 4388653 NA 160+290 bp [A17]; 450 bp [A20] TaqI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000907.1 t3880 AW774053 1 CAPS t3880.G001 v4 chr3 CACAGCCATTTTATTATCTCCTCTCAAC 23405079 23405106 CCGGGTAGTAGGGTCATCATTACA 23405480 23405457 NA 365 bp [A17]; 250+115 bp [A20] HindIII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000910.1 t3880 BE187590 1 CAPS t3880.G001 v4 chr3 CAATTGTCCGGTCTGCTCTTCC 22635923 22635944 ATGCGGATAGAAGGGCTGATGA 22636372 22636351 NA 370 bp [A17]; 80+290 bp [A20] BamHI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000911.1 t3880 BE325283 1 CAPS t3880.G001 v4 chr6 TCGCATTCAATTCTCTTCCTTGC 29695417 29695439 GTCCATCAATTTCAATGTTCCTGTTT 29695864 29695839 NA 72+275 bp [A17]; 357 bp [A20] BsrI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000914.1 t3880 CAF 1 CAPS t3880.G001 v4 chr4 AATTACAACCAGAAATTAAGTATTCGACC 33453803 33453831 TGGAAATTGGTGTCTACACTGGCTAC 33453998 33453973 NA 195 bp [A17]; 30+165 bp [A20] BsiEI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000915.1 t3880 CAK 1 CAPS t3880.G001 v4 chr7 TTCAACCCCTCTGCGAACC 35037152 35037170 CATCTATAGCAATTGCTGTTGTCATCT 35038006 35037982 NA 345+200+210+110 bp [A17]; 545+210+110 bp [A20] ApoI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000917.1 t3880 CDC16 1 CAPS t3880.G001 v4 chr8 GGTAATGGTGGCCGAGGAATA 20111175 20111195 CCTCCCGCTTCACTTCACTTT 20111440 20111420 NA 260 bp [A17]; 210+50 bp [A20] AlwI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000923.1 t3880 CoA-O 1 CAPS t3880.G001 v4 chr4 TTTGGGGGAAATAATGGAAGTCT 41514709 41514731 CTCGGGCAATGTTGAAAAATC 41515427 41515407 NA 10+410+60+210 bp [A17]; 10+410+270 bp [A20] ApoI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000929.1 t3880 CYS 1 CAPS t3880.G001 v4 chr7 ACCTTAATATTGAATTGCATGTGAAAGT 29506087 29506114 CGAAGCATATTTTTATTTACAGCRTCTC 29506328 29506301 NA 30+210 bp [A17]; 30+55+155 bp [A20] ApoI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000932.1 t3880 CysPr1 1 CAPS t3880.G001 v4 chr3 GAAGAATTCATGGGGAGCAAAGT 54277862 54277884 GAGAATTCAAAGAAGAAATTAAGACAAAGA 54278058 54278029 NA 230 bp [A17]; 60+170 bp [A20] AclI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000938.1 t3880 DK009R 1 CAPS t3880.G001 v4 chr5 GGGCAGGCAGCACCAGATA 12519220 12519238 TAGCATCATCTTTCCCATACAA 12519670 12519649 NA 450 bp [A17]; 280+170 bp [A20] DraI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000944.1 t3880 DK024R 1 CAPS t3880.G001 v4 chr4 GACGATTTTACCCTTTATCTAAGC 20110718 20110741 GCCGCGCCATCTTTATTGA 20111106 20111088 NA 440 bp [A17]; 130+310 bp [A20] BglII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000945.1 t3880 DK039R 1 CAPS t3880.G001 v4 chr5 ACCACAAGCAGAGGGAGGATAGT 37423749 37423771 CAATTACTAGATCTATTTTATTTTCAAGC 37424200 37424173 NA 370+80 bp [A17]; 450 bp [A20] DraI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000946.1 t3880 DK043R 1 CAPS t3880.G001 v4 chr4 CGCGTGAGCCTCTTGAGCTTGATGC 23836701 23836725 GGGACTAATTAAAAGAGAGAAAAAGAAAA 23837060 23837034 NA 40+310 bp [A17]; 350 bp [A20] RsaI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000949.1 t3880 DK103L 1 CAPS t3880.G001 v4 chr8 GAAACTGCGCTGCTCTGGAATCTC 38822004 38822027 TCGATCCCAAAACGAAAACTCC 38822440 38822419 NA 430 bp [A17]; 80+350 bp [A20] BglII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000951.1 t3880 DK132L 1 CAPS t3880.G001 v4 chr3 TGGACCTAAGACTTCAAAGATTCAGA 19638071 19638096 CCTATTAAGCATATTTGCAGCATGAACAATTT 19638368 19638337 NA 320 bp [A17]; 290+30 bp [A20] XmnI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000952.1 t3880 DK139L 1 CAPS t3880.G001 v4 chr5 CTAGCAAAACTCAGAAAACCAAGAA 34360551 34360575 CGTTTTAGAGGAAATATGATGAGCA 34360903 34360879 NA 260 bp [A17]; 130+130 bp [A20] EcoRV 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000953.1 t3880 DK140L 1 CAPS t3880.G001 v4 chr1 ACCATGGCCAATGCGAGTTA 2132816 2132835 AAATGAATCTGAGCTTGGTAACGCCAGTAT 2132953 2132924 NA 139 bp [A17]; 29+110 bp [A20] AlwNI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000954.1 t3880 DK201R 1 CAPS t3880.G001 v4 chr3 AGACTATTGGTGATTTCATTGCACGAAGT 31761628 31761656 GGACGCGAGAAATGGCAAAC 31761728 31761709 NA 110 bp [A17]; 30+80 bp [A20] DraIII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000956.1 t3880 DK224R 1 CAPS t3880.G001 v4 chr7 CGAAACAATAATCACAAAACAAATCAG 2206806 2206832 ATCTTGTTTATATGTGTTTGTTGAAGACAGAATT 2206923 2206890 NA 80+30 bp [A17]; 110 bp [A20] EcoRI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000957.1 t3880 DK225L 1 CAPS t3880.G001 v4 chr7 TGTCCTTGCTTCTTATCCTTCCTTCA 2004256 2004281 AGCAGCACAACAACTTACAACAACTC 2004517 2004492 NA 270 bp [A17]; 60+210 bp [A20] NcoI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000958.1 t3880 DK229L 1 CAPS t3880.G001 v4 chr6 ACCAGCCAGAAATCGAAACAGAA 3283227 3283249 TGGCAAGTGGAGGAGAAGACG 3283475 3283455 NA 250 bp [A17]; 200+50 bp [A20] StyI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000959.1 t3880 DK236R 1 CAPS t3880.G001 v4 chr4 GCAATTTAAATGTAATCCATTGAACCA 28335331 28335357 GTATTGTATTGTGAAGGGCATTGCTAGTA 28335463 28335435 NA 125 bp [A17]; 25+100 bp [A20] MwoI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000959.2 t3880 DK236R 2 CAPS t3880.G001 v4 chr4 GCAATTTAAATGTAATCCATTGAACCA 44787286 44787312 GTATTGTATTGTGAAGGGCATTGCTAGTA 44787418 44787390 NA 125 bp [A17]; 25+100 bp [A20] MwoI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000960.1 t3880 DK238R 1 CAPS t3880.G001 v4 chr4 GCAATTTAAATGTAATCCATTGAACCA 28335331 28335357 TTATGCTTCTGATTCTAACTAACCCCA 28335705 28335679 NA 50+250 bp [A17]; 300 bp [A20] SacI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000960.2 t3880 DK238R 2 CAPS t3880.G001 v4 chr4 GCAATTTAAATGTAATCCATTGAACCA 44787286 44787312 TTATGCTTCTGATTCTAACTAACCCCA 44787660 44787634 NA 50+250 bp [A17]; 300 bp [A20] SacI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000961.1 t3880 DK242R 1 CAPS t3880.G001 v4 chr5 CGTATGTTTAATCCGTTAGTCCGTCTT 15970217 15970243 GCTTGCTTAGATATTTGGCACTTCA 15970540 15970516 NA 230+100 bp [A17]; 330 bp [A20] HincII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000962.1 t3880 DK258L 1 CAPS t3880.G001 v4 chr3 GTATTCAGGGATTGAGTAAGAAAAAGGA 9417625 9417652 ACAAAATCCGTGGATGTATAAAAGTGTA 9418073 9418046 NA 470 bp [A17]; 100+360 bp [A20] XbaI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000963.1 t3880 DK264L 1 CAPS t3880.G001 v4 chr4 TGATCGAGGAACCAAAATAAAGAAA 31837629 31837653 GGGGAGTGTTGAGATATGCGTAAT 31838023 31838000 NA 290+110 bp [A17]; 400 bp [A20] BsrI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000965.1 t3880 DK273L 1 CAPS t3880.G001 v4 chr3 GCCCGTCCACCGCTTTTA 47400156 47400173 TATGCCTGGTCTGTTCTTTCTTTACG 47400502 47400477 NA 30+100+220 bp [A17]; 350 bp [A20] BcgI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000968.1 t3880 DK287R 1 CAPS t3880.G001 v4 chr7 AGCCGCCCTCTTGAACCTCC 30096649 30096668 TAGCTGCAACAAAGAAACCAAAACC 30096919 30096895 NA 270 bp [A17]; 135+135 bp [A20] DdeI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000969.1 t3880 DK293R 1 CAPS t3880.G001 v4 chr2 GCTATCCCACCTTAAAATTTCTTCACAA 32118014 32118041 ACTTACAAGGTTAGCGTCATTCTCCATC 32118303 32118276 NA 80+210 bp [A17]; 290 bp [A20] DraI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000972.1 t3880 DK298R 1 CAPS t3880.G001 v4 chr5 GAAACTTGAGAGTGAAGAAAGTGATAGAAC 14370977 14371006 ATAAGATAAGGGCCAACATAAGTAGAAAA 14371399 14371371 NA 430 bp [A17]; 215+215 bp [A20] Bsu36I 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000975.1 t3880 DK321L 1 CAPS t3880.G001 v4 chr6 GAGCGAGCTCAGGATAGACTTTAGAA 20497738 20497763 TCCCACCTCCAATTTGTAGACGAT 20498109 20498086 NA 120+250 bp [A17]; 370 bp [A20] MslI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000977.1 t3880 DK326R 1 CAPS t3880.G001 v4 chr2 GTTGAACGGCTTAAATATCGCACTA 13031975 13031999 CCAGCATGTAAACAATTGAAAGGCA 13032320 13032296 NA 130+220 bp [A17]; 80+130+140 bp [A20] DdeI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000978.1 t3880 DK332R 1 CAPS t3880.G001 v4 chr2 GATGATAACAATCGGGGAAAATAATG 8812683 8812708 GGAAAATTATAAGCCAAACAACAGTAAAG 8813031 8813003 NA 90+120+140 bp [A17]; 90+260 bp [A20] DraI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000979.1 t3880 DK340R 1 CAPS t3880.G001 v4 chr1 GAGAGAGAGAAGAAATAGTTTGTTTTGCTT 7419129 7419158 GTCTTTTTTTTAAGGAGTTTTTCTAGAGATTTAAA 7419359 7419325 NA 230 bp [A17]; 205+25 bp [A20] SwaI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000980.1 t3880 DK347L 1 CAPS t3880.G001 v4 chr2 TTTAGGTGATGGTGGCGTTGTTC 44440221 44440243 AGATTTCATACCAGACGGAGGATAGTTC 44440608 44440581 NA 390 bp [A17]; 40+350 bp [A20] BsiHKAI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000982.1 t3880 Dk351L 1 CAPS t3880.G001 v4 chr4 TGCTTGGGCTTGAGCTTTTAGAA 37429270 37429292 CTGTTTGGGTATTAGTTTTTGTTGGG 37429733 37429708 NA 50+280+140 bp [A17]; 330+140 bp [A20] BfaI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000983.1 t3880 DK353L 1 CAPS t3880.G001 v4 chr4 CCATGCCATGGAAGGGTGTTT 37404802 37404822 GCAAGAACCAGATACCCTTGACATTT 37405132 37405107 NA 90+240 bp [A17]; 330 bp [A20] SphI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000985.1 t3880 DK358L 1 CAPS t3880.G001 v4 chr2 GTTTGCGCCACTTAAGGTTATCTCATT 39738019 39738045 TGTCACCATGTGGCACATTCATT 39738326 39738304 NA 70+230 bp [A17]; 300 bp [A20] EcoNI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000986.1 t3880 DK360R 1 CAPS t3880.G001 v4 chr3 AAGATAGTGCGCTGGTGTGTCAT 34939862 34939884 TTAGCCCATTTGTATATTTGGTCTTTT 34940198 34940172 NA 45+305 bp [A17]; 350 bp [A20] MboI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000989.1 t3880 DK369R 1 CAPS t3880.G001 v4 chr1 GGAACGTGGAGTTGTTGATGGTATTAT 33089636 33089662 GATGTAAAAACCTTTACACTTGATTGATTG 33089943 33089914 NA 150+160 bp [A17]; 310 bp [A20] NlaIV 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000990.1 t3880 DK377R 1 CAPS t3880.G001 v4 chr1 AGCAGCTAGCACGTGTCCTTTGA 46615748 46615770 CCGACTAATTATCAATATTGTCAACTACATCT 46616239 46616208 NA 360+55+85 bp [A17]; 325+35+55+85 bp [A20] BfaI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000991.1 t3880 DK379L 1 CAPS t3880.G001 v4 chr4 AGCTTGTTGAGGTGGAAGGAAGTC 17347222 17347245 GTGTGTATGAGTGTCGTAAGCCCCT 17347631 17347607 NA 50+40+80+70+170 bp [A17]; 50+40+80+240 bp [A20] ClaI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000992.1 t3880 DK381L 1 CAPS t3880.G001 v4 chr4 TGTTACAAAAAGAGTTGGTTGTCGTTC 17331177 17331203 GTGCACTTTTCAATTTGTCCATCATA 17331506 17331481 NA 250+80 bp [A17]; 40+210+80 bp [A20] HinfI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000994.1 t3880 DK407L 1 CAPS t3880.G001 v4 chr2 TTAATTTTATCAACCCACCATATTAGTCAA 2115058 2115087 CCAGTGCTGGAAAAGACAATCAATC 2115374 2115350 NA 320 bp [A17]; 250+70 bp [A20] AluI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000995.1 t3880 DK412L 1 CAPS t3880.G001 v4 chr8 GCTGCATTCCTTCAAAACTTCATCA 31870481 31870505 CGGCGCCATTCTTCACCTTAT 31870871 31870851 NA 390 bp [A17]; 170+220 bp [A20] BsmI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M000997.1 t3880 DK417L 1 CAPS t3880.G001 v4 chr3 ACTCGTCGCCTAACAATATCAACCAG 22209101 22209126 GAATTCCATATCCAACACCTTTAGACTTA 22209506 22209478 NA 410 bp [A17]; 180+230 bp [A20] BbvI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001000.1 t3880 DK427R 1 CAPS t3880.G001 v4 chr7 ATGAGAAACTTTTGAAATTTAGGATACGATAG 33659917 33659948 CCAAACAAGGAAAAGTGTTGGTGTCA 33660349 33660324 NA 60+440 bp [A17]; 500 bp [A20] BsmAI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001001.1 t3880 DK439L 1 CAPS t3880.G001 v4 chr7 GCATTTTCTCTTGAACAAATTATAGTAGTCG 1019040 1019070 CTCAGAGCAATAACACAGATCGATTTATTT 1019143 1019114 NA 60+32+8 bp [A17]; 100 bp [A20] BcgI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001002.1 t3880 DK445R 1 CAPS t3880.G001 v4 chr2 AAAGGCGAGCGACAGTAGCAGGAC 43494745 43494768 AGCACGCGACGCACAAATAACT 43495151 43495130 NA 410 bp [A17]; 350+60 bp [A20] PmlI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001003.1 t3880 DK447R 1 CAPS t3880.G001 v4 chr4 TGAGCAAATTTCGATTTACCCCTT 31226354 31226377 GTGGACGGCGACCACTTTGA 31226707 31226688 NA 100+270 bp [A17]; 370 bp [A20] BglI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001004.1 t3880 DK453L 1 CAPS t3880.G001 v4 chr5 GAGATCCGAAACAACGTCCAAAAAT 37224494 37224518 GGCACTACCCAACTCAGCAAACT 37224959 37224937 NA 150+320 bp [A17]; 470 bp [A20] XmnI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001005.1 t3880 DK455L 1 CAPS t3880.G001 v4 chr8 CACATACAGAGTTTCCAGGATTACCATT 10512824 10512851 AAGGTTGTGTTGCAGGCGGTTTTAGT 10513148 10513123 NA 330 bp [A17]; 220+90 bp [A20] BspHI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001007.1 t3880 Dk473L 1 CAPS t3880.G001 v4 chr3 AACTGGTTAACTCGCTAATTGCTACATA 35012933 35012960 CAATCCTAAACCTCCCAAAAAGC 35013286 35013264 NA 130+230 bp [A17]; 360 bp [A20] BclI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001008.1 t3880 DK490L 1 CAPS t3880.G001 v4 chr2 TGGTTCCAAATTCCACTCAAAAGC 13249098 13249121 AAAAATTGTGTTGTGGTTTAGTGGTAGAC 13249439 13249411 NA 350 bp [A17]; 100+250 bp [A20] HinfI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001010.1 t3880 DK497R 1 CAPS t3880.G001 v4 chr2 GGGAAAAAGCCAAAGGGAATGAAG 16564308 16564331 AAATGTGAAGGGTGGTGGATAGGATGATA 16564784 16564756 NA 20+60+400 bp [A17]; 20+60+110+290 bp [A20] MseI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001011.1 t3880 DK500R 1 CAPS t3880.G001 v4 chr3 TGCAACAAAGCTTAAGAAATAGGAGAT 3885354 3885380 GGTAAGCCATCACACTTTTTCACAA 3885669 3885645 NA 40+280 bp [A17]; 320 bp [A20] ApoI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001013.1 t3880 DK501R 1 CAPS t3880.G001 v4 chr3 TATTTGGGATGGAAGCTATGTTGATTGG 3885400 3885427 TGCTTTAAAGGAGAAGGTAGATGATGAT 3885825 3885798 NA 200+220 bp [A17]; 420 bp [A20] ApoI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001014.1 t3880 DK505R 1 CAPS t3880.G001 v4 chr8 GCCGCCGCTCCCAAACTT 14429260 14429277 CAATTCCCTCCGGCGTCACTT 14429642 14429622 NA 200+180 bp [A17]; 380 bp [A20] AseI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001016.1 t3880 DMY 1 CAPS t3880.G001 v4 chr6 ACAATATAACAAATTTTGAGGTCTATGC 5461919 5461946 TCAAAGTCTCTTTTGCCGAACA 5462290 5462269 NA 130+243 bp [A17]; 130+66+177 bp [A20] DraI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001018.1 t3880 DNABP 1 CAPS t3880.G001 v4 chr4 CCCTATGAGCTTGGGTTTGTCT 26713799 26713820 CTCATGGCATACGTGTTCAGC 26714971 26714951 NA 280+580+260 bp [A17]; 860+260 bp [A20] AflII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001021.1 t3880 DSI 1 CAPS t3880.G001 v4 chr1 ACTGCAGAATCACTTGCCGAGTT 39204684 39204706 CCAAGACATCTTTGGTTTCATCC 39205187 39205165 NA 510 bp [A17]; 100+410 bp [A20] SspI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001023.1 t3880 EIF5A 1 CAPS t3880.G001 v4 chr4 CACAATTGTGGGACGAAGGAAC 54580705 54580726 CGCGCAGAGAAAGCATCAA 54581756 54581738 NA 980 bp [A17]; 360+620 bp [A20] DdeI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001024.1 t3880 ENOD16 1 CAPS t3880.G001 v4 chr4 AAGGACACTCTTCAAGCACACTTTAGATA 54495857 54495885 GTGTCCCGATGACACTATTTAAGGATTC 54495988 54495961 NA 100 bp [A17]; 75 bp [A20] MseI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001026.1 t3880 ENOD8 1 CAPS t3880.G001 v4 chr1 CCATGCCCATTCCTACTTTTCA 10506151 10506172 GTGGATTCCACGGACTTTACTTACT 10507089 10507065 NA 900 bp [A17]; 400+500 bp [A20] ScaI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001027.1 t3880 ENOL 1 CAPS t3880.G001 v4 chr7 TTCCATCAAGGCCCGTCAGA 41939937 41939956 TTGCACCAACCCCATTCATT 41941438 41941419 NA 450+1050 bp [A17]; 1500 bp [A20] SphI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001028.1 t3880 EPS 1 CAPS t3880.G001 v4 chr4 ACGACATACGGAACAGAAATCAGT 8327673 8327695 GCTGTTGTGGAAGGCAGTGG 8329264 8329245 NA 1620 bp [A17]; 1050+570 bp [A20] BglII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001029.1 t3880 EST158 1 CAPS t3880.G001 v4 chr2 TTACAAACCACACCATAATTGCCAAATTG 14988739 14988767 TTGGTGACAACTGACACGAATGAAACTAC 14988919 14988891 NA 180 bp [A17]; 25+155 bp [A20] BglI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001031.1 t3880 EST671 1 CAPS t3880.G001 v4 chr4 TGTCCTTGGGTATGTAGAAAAGCCTTCAC 40828015 40828043 GGTGTTATCTATGAAAGAGGCCTCATTGG 40828252 40828224 NA 240 bp [A17]; 20+200 bp [A20] BglI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001032.1 t3880 EST718 1 CAPS t3880.G001 v4 chr4 TCTTGGAATGCCTTTGAATGAATA 37032714 37032737 CGGCGGCATGCTTAGTGG 37033027 37033010 NA 180+90 bp [A17]; 270 bp [A20] ScaI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001033.1 t3880 EST758 1 CAPS t3880.G001 v4 chr1 TCACTTCCCCTAAATACGCTTCT 38991651 38991673 CTTAATTTCAGCTGCCATTTCAAC 38991876 38991853 NA 230 bp [A17]; 80+150 bp [A20] SpeI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001035.1 t3880 EST948 1 CAPS t3880.G001 v4 chr8 GCAGGGGTTTCGCTCCAGTG 35373871 35373890 AACTTAATGAATGATTGGAAGGTTTAGCG 35374084 35374058 NA 25+190 bp [A17]; 215 bp [A20] HaeII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001037.1 t3880 FAL 1 CAPS t3880.G001 v4 chr5 ATGATAAGTATGCATGTTCAGAGTCA 29238152 29238177 TTATCGCCAATGCCGCCTACA 29238605 29238585 NA 450 bp [A17]; 110+340 bp [A20] BclI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001039.1 t3880 FIS-1 1 CAPS t3880.G001 v4 chr4 CTGTTTCATCAACTTCAGCAACTTT 44739076 44739100 TCAGTGATTGAGGGTTTTTCTACG 44740437 44740414 NA 1280+90 bp [A17]; 140+1140+90 bp [A20] BbsI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001043.1 t3880 GLO3 1 CAPS t3880.G001 v4 chr8 TTTACTTTTGATTCATGAATTAAGCGTGTCAA 27995127 27995158 GTGATAAGAATTTGGAAGTTAGAACCTGAT 27995369 27995340 NA 210+30 bp [A17]; 240 bp [A20] HincII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001045.1 t3880 GSb 1 CAPS t3880.G001 v4 chr3 GGAGAGAACAATATTATTATTTGCTTACC 29441258 29441286 CTATGAGAGAAGATGGTGGCTATGAAGTCATCTTG 29441437 29441403 NA 130+50 bp [A17]; 180 bp [A20] NA 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001047.1 t3880 HYPTE116 1 CAPS t3880.G001 v4 chr4 AACACAGAGGTAGCGTTTGGTTTAT 17747810 17747834 TCGGGTCAAGATCTCGTTCAA 17748165 17748145 NA 250+120 bp [A17]; 370 bp [A20] BsrI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001052.1 t3880 KCoAT 1 CAPS t3880.G001 v4 chr1 CTCCAGCACCATCACTCACCT 17820574 17820594 TGCTACTGCGGGTGGTAGATTTA 17820964 17820942 NA 400 bp [A17]; 130+270 bp [A20] EarI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001054.1 t3880 MDH2 1 CAPS t3880.G001 v4 chr1 GCATGCCTCGACAACATCAGT 16121130 16121150 CTTCCATTTTCGATTCCTTTCATT 16122375 16122352 NA 70+100+1080 bp [A17]; 70+1180 bp [A20] DraI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001055.1 t3880 MPP 1 CAPS t3880.G001 v4 chr8 TCCCCGAAACAATCCTCATCTG 42997223 42997244 GCAAATGTGTAGCCCCAAAAGTTA 42997653 42997630 NA 110+330 bp [A17]; 440 bp [A20] BstBI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001056.1 t3880 MRS 1 CAPS t3880.G001 v4 chr4 TTTTGACCGGTTCCAAGTAGAGTAG 29768296 29768320 GTCTGTGGTGGGATCATGGAGT 29770445 29770424 NA 210+856+55 bp [A17]; 210+720+136+55 bp [A20] DdeI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001063.1 t3880 MtEIL1 1 CAPS t3880.G001 v4 chr3 CACCTGCGAGGTATTCAAACTGTAA 35556395 35556419 GACATGTATCGGATTCTCACGAGC 35556703 35556680 NA 310 bp [A17]; 255+55 bp [A20] EcoRI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001064.1 t3880 MtEIL2 1 CAPS t3880.G001 v4 chr5 TATCTTTTATTTCGGTATTCATCTCCA 38138689 38138715 GGAGCATCCATAGCCACTGTTG 38138997 38138976 NA 160+145 bp [A17]; 305 bp [A20] FokI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001065.1 t3880 MTU04 1 CAPS t3880.G001 v4 chr5 ATGGGAAGAGGATTGCTGTGATA 19368925 19368947 AAGCGAACATTTTTGGCATCTAC 19370136 19370114 NA 310+855 bp [A17]; 1165 bp [A20] NsiI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001068.1 t3880 NAM 1 CAPS t3880.G001 v4 chr6 ATTCAGTGGCTCGATTGGTTCTA 31606158 31606180 TAACCTAAGTACACCATGTAACTAATTTTC 31606536 31606507 NA 130+7+120+33+96 bp [A17]; 130+7+153+96 bp [A20] MseI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001069.1 t3880 NCAS 1 CAPS t3880.G001 v4 chr1 TTCCCAAGCCCAAATCCTAAT 17065100 17065120 CATCACCAGGCCATCATCATAAGT 17065527 17065503 NA 440 bp [A17]; 80+360 bp [A20] AciI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001070.1 t3880 NPAC 1 CAPS t3880.G001 v4 chr3 TGGCTCCAGGTCCAGTTATTGA 42498074 42498095 TCGGCTCTTCTTCTCGCTTCT 42499369 42499349 NA 340+130+270+500 bp [A17]; 470+270+500 bp [A20] SspI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001073.1 t3880 NUM1 1 CAPS t3880.G001 v4 chr4 AAAACAAAGTAAAAACAATATCTTTAAAAATC 28566777 28566806 GATGCTGCTCCTGTTGTTGTTTC 28567122 28567100 NA 48+29+243 bp [A17]; 48+272 bp [A20] TaqI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001075.1 t3880 PAE 1 CAPS t3880.G001 v4 chr8 CTAAAAGCAGCAGAAGGGGTTAC 30385413 30385435 GATCCGGTCAAGGCAAGTAGTT 30386171 30386150 NA 610+190 bp [A17]; 340+270+190 bp [A20] FokI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001076.1 t3880 PCT 1 CAPS t3880.G001 v4 chr2 CACGGCACATCTGGAATAACTT 15190589 15190610 TTGGCAAAAACGATAAACCTGT 15192543 15192522 NA 240 bp [A17]; 150+90 bp [A20] RsaI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001077.1 t3880 PESR1 1 CAPS t3880.G001 v4 chr7 CATCTGAACAAACCCATCTCCA 17806757 17806778 GCTGTTAATTCGGCGTTTGA 17806990 17806971 NA 237 bp [A17]; 176+61 bp [A20] AciI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001078.1 t3880 PFK 1 CAPS t3880.G001 v4 chr2 TCCCACTGCAAATCATGTCAAAAC 8869661 8869684 ACACAAGTGGATATTGATGGTTAGACTAC 8870154 8870126 NA 500 bp [A17]; 80+420 bp [A20] SspI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001080.1 t3880 PGKI 1 CAPS t3880.G001 v4 chr2 GATGACTGTATTGGCGAGGAAGT 27710628 27710650 GTTCGACACGGCTCCAACTA 27711172 27711153 NA 550 bp [A17]; 210+340 bp [A20] DraI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001083.1 t3880 PPGM 1 CAPS t3880.G001 v4 chr7 ACCAAGCGCGTTATGACCAA 27864030 27864049 AAAGAAAGATGGGAAGCACTGATT 27864393 27864370 NA 165+210 bp [A17]; 375 bp [A20] BbvI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001086.1 t3880 PRTS 1 CAPS t3880.G001 v4 chr3 CATAGCTACTTGATCTGAAAACTTGACA 33945868 33945895 TGGTGAACTTCACTACCATTACAACC 33946110 33946085 NA 200+50 bp [A17]; 250 bp [A20] BsaJI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001088.1 t3880 QORlik 1 CAPS t3880.G001 v4 chr4 GATGGTCTGGCAACTGT 11807330 11807346 AGGGAGGACTTTTCTTAG 11807738 11807721 NA 119+290 bp [A17]; 409 bp [A20] RsaI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001089.1 t3880 RBBP 1 CAPS t3880.G001 v4 chr2 CACAATTCGCAATCACCAAAGTAT 17195555 17195578 CAAGAGGACGCAAACCTAAACC 17196643 17196622 NA 220+860 bp [A17]; 1080 bp [A20] BglII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001090.1 t3880 REP 1 CAPS t3880.G001 v4 chr8 CACCGGTTGCCCTCCAGAC 28819739 28819757 CTCCATTTCCCGTTCGTTCG 28820434 28820415 NA 30+690 bp [A17]; 30+105+585 bp [A20] HaeIII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001091.1 t3880 rip1 1 CAPS t3880.G001 v4 chr5 GCAATGCGTTGCTAGGGATTAATGATGTGACC 31799439 31799470 AGTTTATAAAGAGTAACACACATCTCACC 31800069 31800041 NA 81+320+37+134+59 bp [A17]; 81+320+171+53 bp [A20] SspI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001092.1 t3880 RL13 1 CAPS t3880.G001 v4 chr2 GCCAAGCAGGTATCTATTCTTCATCT 3980086 3980111 CGGTACACAACATAACCCTAAAATCA 3980265 3980240 NA 35+10+30+65+40 bp [A17]; 35+105+40 bp [A20] MseI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001093.1 t3880 RL3 1 CAPS t3880.G001 v4 chr1 CCTGGCTTTTCGACTTCTCTGAC 44369061 44369083 GACACGGTTCTTTGGGATTTCTC 44369681 44369659 NA 250+100+230 bp [A17]; 250+60+40+230 bp [A20] PacI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001094.1 t3880 RLPO 1 CAPS t3880.G001 v4 chr3 TCTTGGCCCTTTAATTTCCTCTC 50021302 50021324 AACCTTGTATTTAGCAACTTCTTCACTG 50022373 50022347 NA 320+740 bp [A17]; 1060 bp [A20] BspHI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001095.1 t3880 RNAH 1 CAPS t3880.G001 v4 chr7 TTAGCCCTAGCAAGAATGTCACTG 28974173 28974196 GCTTCCACCAGCTGATACACG 28975078 28975058 NA 940 bp [A17]; 280+660 bp [A20] ApaI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001096.1 t3880 SAMS 1 CAPS t3880.G001 v4 chr2 GTCAGCATCAAGACCAACATCATC 20525977 20526000 CATAGCAAAGCGGGTTCAATCT 20527080 20527059 NA 1050 bp [A17]; 525+525 bp [A20] BstBI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001099.1 t3880 SDP1 1 CAPS t3880.G001 v4 chr8 TGTGACGGTTGAATATCTGAATGTTT 17957492 17957517 TGGCTCTAAATCAGGGGAAGAATA 17958501 17958478 NA 76+829+62 bp [A17]; 76+726+103+62 bp [A20] SspI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001100.1 t3880 SQEX 1 CAPS t3880.G001 v4 chr4 CAATTCACCCACAATTCTATCAGG 36747834 36747857 TGCCGCTATAAAAAGTAAACAAAGAA 36748877 36748852 NA 810+260 bp [A17]; 190+620+260 bp [A20] EcoRV 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001104.1 t3880 TE001 1 CAPS t3880.G001 v4 chr6 CGGCGCCGGAGATTACACTG 34339977 34339996 AATCACAAACCCACCCAACATCTG 34340977 34340954 NA 500+500 bp [A17]; 1000 bp [A20] XmnI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001105.1 t3880 TE011 1 CAPS t3880.G001 v4 chr4 CAAGAAGAAGCCCTAGTCCTCCATT 9112689 9112713 GGAGAGAAACCGGACTGAAGAAACA 9114234 9114210 NA 1140+410 bp [A17]; 1140+220+190 bp [A20] AclI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001106.1 t3880 TE013 1 CAPS t3880.G001 v4 chr6 TCCGCATGTACGAGTTCAAGATAAG 34340165 34340189 AAATCACAAACCCACCCAACATC 34340978 34340956 NA 320+500 bp [A17]; 820 bp [A20] XmnI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001107.1 t3880 TE016 1 CAPS t3880.G001 v4 chr4 AAACACTCCCACGTCGCACTAAG 4622689 4622711 TCCCCAGGCCTTACAAGATGATTAT 4624737 4624713 NA 1300 bp [A17]; 400+900 bp [A20] SalI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001108.1 t3880 TE019 1 CAPS t3880.G001 v4 chr5 TTTTAGAATCAACAATGCAACCAGAAG 20701194 20701220 GCATGTGACCGATGAGGAAACC 20702564 20702543 NA 150+950 bp [A17]; 1100 bp [A20] AflII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001109.1 t3880 TGDH 1 CAPS t3880.G001 v4 chr4 GACGTGTATTGTAATCAGCAGGAGTA 20490312 20490337 CGGTGGCTTCATCGGTTCT 20490645 20490627 NA 340 bp [A17]; 60+280 bp [A20] MnlI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001112.1 t3880 TRPT 1 CAPS t3880.G001 v4 chr3 AACCACAATCTTTTCTCCCATCTT 18394859 18394882 AACATTCAAAGCCCACCAAGTT 18395142 18395121 NA 290 bp [A17]; 60+230 bp [A20] DdeI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001113.1 t3880 TUP 1 CAPS t3880.G001 v4 chr1 TGGATCAGTGGCACCATCTTTAT 37105476 37105498 GAATGGGATGCTATGGGAAGTG 37106091 37106070 NA 620 bp [A17]; 230+390 bp [A20] BclI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001114.1 t3880 UDPGD 1 CAPS t3880.G001 v4 chr7 ATCGTCAAGGCCAGGTTCATAG 3665107 3665128 CAAAAGCGTTTCATCACTCATCTCT 3666508 3666484 NA 1350 bp [A17]; 230+1120 bp [A20] MnlI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001115.1 t3880 UNK16 1 CAPS t3880.G001 v4 chr4 GAAGAAAATGATGAAAAGCCAAAAG 8611207 8611231 CCTTCCAATATCCCTCCCACAT 8611528 8611507 NA 330 bp [A17]; 150+180 bp [A20] FspI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001116.1 t3880 UNK21 1 CAPS t3880.G001 v4 chr7 TCGCCTCCATGTCCACCTC 44807667 44807685 CGGCCTTGCTAAATCAGTCAG 44808628 44808608 NA 90+830 bp [A17]; 920 bp [A20] EarI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001120.1 t3880 UNK3 1 CAPS t3880.G001 v4 chr4 GACCTAGGCAACACAACTCCATTA 9309950 9309973 CACCGGAAATTCAACAGCAAC 9310471 9310451 NA 470 bp [A17]; 80+390 bp [A20] MboII 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001121.1 t3880 UNK7 1 CAPS t3880.G001 v4 chr5 GAGAATCTTTCTCCATCGTATCTTACTT 2879798 2879825 AAAAAGCAGCAAGAGAAATGTCAAT 2881217 2881193 NA 1250+170 bp [A17]; 1420 bp [A20] XhoI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001122.1 t3880 VBP1 1 CAPS t3880.G001 v4 chr7 GCGAAAGCCTCCAATCCAC 35187444 35187462 CTGGAGAGCAGACCCATTCAAT 35188435 35188414 NA 950 bp [A17]; 110+840 bp [A20] DrdI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001125.1 t3880 zwilik 1 CAPS t3880.G001 v4 chr1 TTTTGAAGATTTATTTGTAGAGTA 15448008 15448031 ATTTGAGTGTACCCATTGAGAT 15448472 15448451 NA 475 bp [A17]; 350+125 bp [A20] XmnI 10.1534/genetics.166.3.1463 15082563 1 JCVI.Medtr.v4.20130313 t3880.M001127.1 t3880 TC90233 1 CAPS t3880.G001 v4 chr4 GAACACAGGCAGAACAACCA 6593985 6594004 CCGATCCAAAGAAGAGAAGG 6594274 6594255 NA 100+120 [SA27063]; 220 [SA3054] AluI 10.1186/1471-2229-8-30 18366746 1 JCVI.Medtr.v4.20130313 t3880.M001129.1 t3880 VR 1 CAPS t3880.G001 v4 chr7 AAGCTGTTCTTGAATTTGGTGA 27944796 27944817 TCCACGAGTTTCTTCGTGTTT 27945666 27945646 NA 800 [SA27063]; 600+300 [SA3054] XhoI 10.1186/1471-2229-8-30 18366746 1 JCVI.Medtr.v4.20130313