marker_id species_id marker_name sub_number marker_type mapped_genome_id reference_seq_name chr fwd_primer_seq fwd_primer_start_pos fwd_primer_end_pos rev_primer_seq rev_primer_start_pos rev_primer_end_pos target_seq target_chr target_start_pos target_end_pos allele enzyme comments doi pubmed f_active assembly_version t3711.M000375.1 t3711 KBrB046G18c 1 SCAR t3711.G001 BrapaV3.0 A09 TCAACTCTCCGTGGTACACT 44975141 44975160 CGTTCGGATTCGGATATCCA 44976903 44976884 NA + [‘Harusakari P04’ (DH line)]; + [‘STS32’ (homozygous line of S-32 haplotype)] NA 10.1007/s00122-010-1340-7 20414635 1 Brapa_sequence_v3.0 t3711.M000674.1 t3711 BraMAM1-1 1 SCAR t3711.G001 BrapaV3.0 A03 CTAAGCTCTTCGCATAGCTA 22093954 22093973 GTTTCCCTGCGTCATCAGA 22094415 22094397 NA - [B. oleracea white cauliflower accessionSnowball 76]; + [Chinese cabbage DH line RI16 (B.rapa)] NA 10.3389/fpls.2013.00055 23532458 1 Brapa_sequence_v3.0 t3711.M000675.1 t3711 BraAE2 1 SCAR t3711.G001 BrapaV3.0 A02 CAGTCAAATTTACCGCCTT 29595837 29595855 GGTGGCTTTCGCGGACAC 29596746 29596729 NA NA NA 10.3389/fpls.2013.00055 23532458 1 Brapa_sequence_v3.0 t3711.M000854.1 t3711 KBrH003N18c 1 SCAR t3711.G001 BrapaV3.0 A01 CAAGTTCCTGTACCTGCTGA 27314645 27314664 AATACTTGACAGCCACACGC 27316616 27316597 NA + [‘Harusakari P04’ (DH line)]; + [‘STS32’ (homozygous line of S-32 haplotype)] NA 10.1007/s00122-010-1340-7 20414635 1 Brapa_sequence_v3.0 t3711.M000855.1 t3711 KBrB022L12c 1 SCAR t3711.G001 BrapaV3.0 A09 GAATCGTGGATAGCTTCTGG 4951657 4951676 AGCTAGAGAGCGTCGTGTTA 4953663 4953644 NA + [‘Harusakari P04’ (DH line)]; + [‘STS32’ (homozygous line of S-32 haplotype)] NA 10.1007/s00122-010-1340-7 20414635 1 Brapa_sequence_v3.0 t3711.M000906.1 t3711 BrDAAc 1 SCAR t3711.G001 BrapaV3.0 A07 GAGACGACAAGGAACTGCGA 1012816 1012835 TTAGGGAATCCGGTGGAGAA 1015264 1015247 NA + [‘Harusakari P04’ (DH line)]; + [‘STS32’ (homozygous line of S-32 haplotype)] NA 10.1007/s00122-010-1340-7 20414635 1 Brapa_sequence_v3.0 t3711.M000907.1 t3711 BrMMDHc 1 SCAR t3711.G001 BrapaV3.0 A08 CTTGTCCGATCCTCCGCCTC 1179901 1179920 GGTTGGCAAACTTAACTCCC 1181493 1181474 NA + [‘Harusakari P04’ (DH line)]; + [‘STS32’ (homozygous line of S-32 haplotype)] NA 10.1007/s00122-010-1340-7 20414635 1 Brapa_sequence_v3.0 t3711.M000978.1 t3711 TCR08 1 SCAR t3711.G001 BrapaV3.0 A07 ATTACCGGAGTATGCGATCC 688094 688113 GCAGAATTATAACCTGAGCGTGT 688216 688194 NA - [94SK]; + [CR Shinki DH line] NA 10.1007/s00122-003-1577-5 14997298 1 Brapa_sequence_v3.0 t3711.M000981.1 t3711 TCR01 1 SCAR t3711.G001 BrapaV3.0 A03 GGCACGTGAGAAAAACGTAT 25204985 25205004 GAGACGAGTTGACGAAGTAA 25205177 25205158 NA NA NA 10.1007/s00122-003-1577-5 14997298 1 Brapa_sequence_v3.0 t3711.M001001.1 t3711 MR13-MR54 1 SCAR t3711.G001 BrapaV3.0 A09 TGCTCGTTCTTGACAACAC 25146677 25146695 GAGAATTGAGAGACAAAGC 25147056 25147038 NA 388/388 [Brown seeded]; 400/388 [F1 genotype]; 400/400 [Yellow or yellow-brown seeded] NA 10.1007/s00122-007-0636-8 17846742 1 Brapa_sequence_v3.0 t3711.M001196.1 t3711 BrM1c 1 SCAR t3711.G001 BrapaV3.0 A01 TCACCAAGGACCTCAACACT 8186392 8186411 TCGTAGTGAGCAGTGTCAGG 8187666 8187647 NA NA NA 10.1093/dnares/dsp020 19884167 1 Brapa_sequence_v3.0 t3711.M001198.1 t3711 BrHLS1c 1 SCAR t3711.G001 BrapaV3.0 A01 CCTCTTGGCACGATAACACT 659349 659368 TACGGAGGAGAAGGAGATAG 660580 660561 NA NA NA 10.1093/dnares/dsp020 19884167 1 Brapa_sequence_v3.0 t3711.M001199.1 t3711 BrPL2c 1 SCAR t3711.G001 BrapaV3.0 A05 CAATGTTCGAACTCAAGCGG 105242 105261 CAAGTGTCTGGAGATGATGG 107206 107187 NA NA NA 10.1093/dnares/dsp020 19884167 1 Brapa_sequence_v3.0 t3711.M001200.1 t3711 KBrB033O04c 1 SCAR t3711.G001 BrapaV3.0 A04 TGGAGATTGTCCTCCGATCA 18887965 18887984 CTCCGGACCGTATCTATCTA 18889975 18889956 NA NA NA 10.1093/dnares/dsp020 19884167 1 Brapa_sequence_v3.0 t3711.M001202.1 t3711 KBrB071K22c 1 SCAR t3711.G001 BrapaV3.0 A06 ATACGAGCGTTGTTTCCTCC 28708444 28708463 CTTCCAACACCTTCTCCAAG 28710428 28710409 NA NA NA 10.1093/dnares/dsp020 19884167 1 Brapa_sequence_v3.0 t3711.M001449.1 t3711 SCAR01 1 SCAR t3711.G001 BrapaV3.0 A04 CACGGATCATCAGCTCCATGT 8433219 8433239 GGTAGAAAACCAATCGAACCAAGA 8433474 8433451 NA + [AB01-1]; - [SD2] NA 10.1270/jsbbs.59.333 NA 1 Brapa_sequence_v3.0 t3711.M002306.1 t3711 trsSCAR_2 1 SCAR t3711.G001 BrapaV3.0 A04 GAAACAAGGTAGTTATCCATTCTAAGTGTG 7330459 7330488 GATGTCCCATTATTGTTTGATTATCCTGTTCC 7330656 7330625 NA - [SB18, SB22]; + [SB20, SB24, GJS2A]; GATGTCCCA [SB20, SB24, GJS2A] NA 10.1007/s11032-013-9878-0 NA 1 Brapa_sequence_v3.0 t3711.M002778.1 t3711 SC1233 1 SCAR t3711.G001 BrapaV3.0 A09 GGCTTGCGATACACCATCA 42149379 42149397 GAACTCACGAACACGGACAAA 42150943 42150923 NA NA NA 10.1111/pbr.12200 NA 1 Brapa_sequence_v3.0 t3711.M002780.1 t3711 SC2141 1 SCAR t3711.G001 BrapaV3.0 A09 CAGGCTATACTAGGCAGGCA 43545948 43545967 CGTTCGCCATTGTTTGTC 43546817 43546800 NA NA NA 10.1111/pbr.12200 NA 1 Brapa_sequence_v3.0 t3711.M003008.1 t3711 SCOR127 1 SCAR t3711.G001 BrapaV3.0 A09 GAGTCGCTACTGGTGAAAC 39997456 39997474 AAAGAATTATTGACGCATGA 39997582 39997563 NA not amplified [91-112]; amplified [T12-19] NA 10.1007/s10681-008-9721-6 NA 1 Brapa_sequence_v3.0 t3711.P0001931 t3711 K-1 1 SCAR t3711.G001 Brapa_sequence_v3.0 A03 AGATGGTGACGGCGAAGA 24979589 24979606 ACCTGGACATTGGATTGA 24980005 24979988 NA NA 0 0 NA NA 10.1111/pbr.12379 NA 1 Brapa_sequence_v3.0 t3711.P0001932 t3711 K-2 1 SCAR t3711.G001 Brapa_sequence_v3.0 NA CGTGTCAAAGAATCTCATC 0 0 TGCTACTATTTAGAAACCTC 0 0 NA NA 0 0 NA NA 10.1111/pbr.12379 NA 1 Brapa_sequence_v3.0 t3711.P0001933 t3711 K-3 1 SCAR t3711.G001 Brapa_sequence_v3.0 A03 ATGTTGATGCTACTGAGAC 24960034 24960052 CTTTGGATTGTTGACCTT 24960901 24960884 NA NA 0 0 NA NA 10.1111/pbr.12379 NA 1 Brapa_sequence_v3.0 t3711.P0001934 t3711 K-4 1 SCAR t3711.G001 Brapa_sequence_v3.0 A03 ATCCCAAATCAGCAACGC 24952481 24952498 CGCAAAGAGCCATCCTAC 24952964 24952947 NA NA 0 0 NA NA 10.1111/pbr.12379 NA 1 Brapa_sequence_v3.0 t3711.P0001935 t3711 K-5 1 SCAR t3711.G001 Brapa_sequence_v3.0 A03 TGAAGGTATGGGTTATGG 24944517 24944534 TCAGTTGTTTCTTGTGGG 24944739 24944722 NA NA 0 0 NA NA 10.1111/pbr.12379 NA 1 Brapa_sequence_v3.0 t3711.P0001936 t3711 K-6 1 SCAR t3711.G001 Brapa_sequence_v3.0 A03 AAAGTCAGTAGCCCAAAG 24936294 24936311 TAACGGGAAGTAAGCAAT 24936693 24936676 NA NA 0 0 NA NA 10.1111/pbr.12379 NA 1 Brapa_sequence_v3.0 t3711.P0001937 t3711 K-7 1 SCAR t3711.G001 Brapa_sequence_v3.0 A03 CACGAGACTCCCTCCTAA 24929420 24929437 GCACTTTGCTCATTGGTA 24929725 24929708 NA NA 0 0 NA NA 10.1111/pbr.12379 NA 1 Brapa_sequence_v3.0 t3711.P0001938 t3711 K-8 1 SCAR t3711.G001 Brapa_sequence_v3.0 NA CGTAAACCTCGTCAAATC 0 0 TGGTGCTAAGAGTGTAAGA 0 0 NA NA 0 0 NA NA 10.1111/pbr.12379 NA 1 Brapa_sequence_v3.0 t3711.P0001939 t3711 K-9 1 SCAR t3711.G001 Brapa_sequence_v3.0 A03 AATGTGGTGGGAAGGATG 24923860 24923877 TACCGTAGTCTGGAAAGC 24924650 24924633 NA NA 0 0 NA NA 10.1111/pbr.12379 NA 1 Brapa_sequence_v3.0 t3711.P001585.1 t3711 K-1 1 SCAR t3711.G001 Brapa_sequence_v3.0 A03 AGATGGTGACGGCGAAGA 24979589 24979606 ACCTGGACATTGGATTGA 24980005 24979988 10.1111/pbr.12379 1 Brapa_sequence_v3.0 t3711.P001586.1 t3711 K-3 1 SCAR t3711.G001 Brapa_sequence_v3.0 A03 ATGTTGATGCTACTGAGAC 24960034 24960052 CTTTGGATTGTTGACCTT 24960901 24960884 10.1111/pbr.12379 1 Brapa_sequence_v3.0 t3711.P001587.1 t3711 K-4 1 SCAR t3711.G001 Brapa_sequence_v3.0 A03 ATCCCAAATCAGCAACGC 24952481 24952498 CGCAAAGAGCCATCCTAC 24952964 24952947 10.1111/pbr.12379 1 Brapa_sequence_v3.0 t3711.P001588.1 t3711 K-5 1 SCAR t3711.G001 Brapa_sequence_v3.0 A03 TGAAGGTATGGGTTATGG 24944517 24944534 TCAGTTGTTTCTTGTGGG 24944739 24944722 10.1111/pbr.12379 1 Brapa_sequence_v3.0 t3711.P001589.1 t3711 K-6 1 SCAR t3711.G001 Brapa_sequence_v3.0 A03 AAAGTCAGTAGCCCAAAG 24936294 24936311 TAACGGGAAGTAAGCAAT 24936693 24936676 10.1111/pbr.12379 1 Brapa_sequence_v3.0 t3711.P001590.1 t3711 K-7 1 SCAR t3711.G001 Brapa_sequence_v3.0 A03 CACGAGACTCCCTCCTAA 24929420 24929437 GCACTTTGCTCATTGGTA 24929725 24929708 10.1111/pbr.12379 1 Brapa_sequence_v3.0 t3711.P001591.1 t3711 K-9 1 SCAR t3711.G001 Brapa_sequence_v3.0 A03 AATGTGGTGGGAAGGATG 24923860 24923877 TACCGTAGTCTGGAAAGC 24924650 24924633 10.1111/pbr.12379 1 Brapa_sequence_v3.0