marker_id species_id marker_name sub_number marker_type mapped_genome_id reference_seq_name chr fwd_primer_seq fwd_primer_start_pos fwd_primer_end_pos rev_primer_seq rev_primer_start_pos rev_primer_end_pos target_seq target_chr target_start_pos target_end_pos allele enzyme comments doi pubmed f_active assembly_version t3641.M000014.1 t3641 UENF/CEPLAC 10 1 SSR t3641.G001 V2 chr5 TGCAGCGGTGGCGGTGGA 1010439 1010456 TCGAGCCTTCTTCTTCT 1010509 1010493 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000018.1 t3641 UENF/CEPLAC 13 1 SSR t3641.G001 V2 chr9 TCGGCAGGAGAAGAGTGAGA 7831311 7831330 AACCCAAGCACCAGAT 7831370 7831355 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000019.1 t3641 UENF/CEPLAC 14 1 SSR t3641.G001 V2 chr3 AATTTAGAAGACACCCTGGAT 27105247 27105267 ACACCTTACATGCGTCCACA 27105525 27105508 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000020.1 t3641 UENF/CEPLAC 15 1 SSR t3641.G001 V2 chr2 ATCCTTGCTTGCTTCTCCT 1392541 1392559 TCACATTCCAACTGGCGAT 1392840 1392822 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000021.1 t3641 UENF/CEPLAC 16 1 SSR t3641.G001 V2 chr5 ACCGCCTTTCTTCACTCCTT 27064412 27064431 TTAACGCTGCTGTTGATA 27064594 27064577 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000027.1 t3641 UENF/CEPLAC 23 1 SSR t3641.G001 V2 chr10 ATATCATTACACAATA 8864522 8864537 ACCGGTGAGTGAACTTGCAT 8864714 8864695 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000027.2 t3641 UENF/CEPLAC 23 2 SSR t3641.G001 V2 chr10 ATATCATTACACAATA 16373679 16373694 ACCGGTGAGTGAACTTGCAT 16373872 16373853 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000028.1 t3641 UENF/CEPLAC 24 1 SSR t3641.G001 V2 chr10 AGTGGAGATGTGGGGTCT 14441408 14441425 TGCCAATTGAGTTGTTGTGA 14441472 14441453 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000030.1 t3641 UENF/CEPLAC 27 1 SSR t3641.G001 V2 chr2 ATATGTGATCTGTGTGT 40221420 40221436 AGGGAGCGAAGAGAGAG 40221555 40221539 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000044.1 t3641 UENF/CEPLAC 42 1 SSR t3641.G001 V2 chr9 TTGCCAAATGGTTTTATGTTGT 22721652 22721673 ACGGGCACTATCATCATCCA 22721847 22721828 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000046.1 t3641 UENF/CEPLAC 44 1 SSR t3641.G001 V2 chr9 TAGGGGAATCATCCCATCA 1973057 1973075 ACATGGACAACCCGAAAGT 1973243 1973225 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000055.1 t3641 UENF/CEPLAC 54 1 SSR t3641.G001 V2 chr7 ATTTCCTTGTTATTTTA 1503745 1503761 ACTCACTCTCCGCTGTTCCT 1504050 1504031 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000064.1 t3641 UENF/CEPLAC 63 1 SSR t3641.G001 V2 chr1 AAGAACAGCAACAACAACAA 24616111 24616130 AATTCATATCCTCCAA 24616315 24616300 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000070.1 t3641 UENF/CEPLAC 67 1 SSR t3641.G001 V2 chr1 ACAGCAACAACGCCGACTA 24616079 24616095 ATCCTCCAAAGGCAGA 24616308 24616293 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000072.1 t3641 UENF/CEPLAC 69 1 SSR t3641.G001 V2 chr1 ACGACGACAACAACAAGA 24616097 24616114 AGGCTGAGGTGGTGCTACA 24616293 24616275 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000076.1 t3641 UENF/CEPLAC 72 1 SSR t3641.G001 V2 chr1 ACAACAACAAGAACAGCA 24616103 24616120 AATTCATATCCTCCAA 24616315 24616300 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000077.1 t3641 UENF/CEPLAC 73 1 SSR t3641.G001 V2 chr9 TCGGCTAAGTAGACGG 34504230 34504245 ACGGGTCCTTTTCTT 34504338 34504324 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000078.1 t3641 UENF/CEPLAC 75 1 SSR t3641.G001 V2 chr1 AACAGCACTGCTCTGAACAA 24616162 24616181 ATATCCTCCAAAGGCA 24616310 24616295 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000082.1 t3641 UENF/CEPLAC 80 1 SSR t3641.G001 V2 chr9 TGGCAGACTCCTCTAAGT 3752422 3752437 TGCTGTGGCTGTGACTGT 3752568 3752551 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000083.1 t3641 UENF/CEPLAC 81 1 SSR t3641.G001 V2 chr1 AACAGCAACAACGCCGACGA 24616078 24616097 AATTCATATCCTCCAA 24616315 24616300 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000085.1 t3641 UENF/CEPLAC 83 1 SSR t3641.G001 V2 chr6 TCACGTGAAGAACTGGCTGT 19330233 19330252 AATGAAGTGCCGTCAAAT 19330414 19330397 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000087.1 t3641 UENF/CEPLAC 85 1 SSR t3641.G001 V2 chr9 TCTTGTCCATCACTTT 34504099 34504114 TGCCACCAACACAAACAA 34504196 34504179 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000097.1 t3641 UENF/CEPLAC 95 1 SSR t3641.G001 V2 chr2 AGAGAAAACATGGACAAA 39845502 39845519 AGGGGAGATTGCTGAA 39845666 39845651 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000111.1 t3641 UENF/CEPLAC 110 1 SSR t3641.G001 V2 chr1 ACGACAACAACAAGAA 24616100 24616115 TGGTGCTACAGCAGA 24616284 24616270 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000112.1 t3641 msEstTsh-1 1 SSR t3641.G001 V2 chr6 CACATGGCTTGACTGGAA 10316375 10316392 CACGAAGAAGTGGACGAT 10316568 10316551 NA NA NA 10.1007/s11032-008-9174-6 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000119.1 t3641 UENF/CEPLAC 121 1 SSR t3641.G001 V2 chr1 ACGACGACAACAACAAGA 24616097 24616114 ATCCTCCAAAGGCAGA 24616308 24616293 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000122.1 t3641 msEstTsh-2 1 SSR t3641.G001 V2 chr3 ATTCCCTGCCCTCTTACG 7302581 7302598 CCAGATGTGGATGCGGAT 7302751 7302734 NA NA NA 10.1007/s11032-008-9174-6 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000129.1 t3641 msEstTsh-4 1 SSR t3641.G001 V2 chr10 ATATCTCCACCACCACAG 4579795 4579810 CCGGAGAATGTAGAACCT 4579971 4579954 NA NA NA 10.1007/s11032-008-9174-6 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000131.1 t3641 UENF/CEPLAC 131 1 SSR t3641.G001 V2 chr9 ATGATGATGGGATGGTGT 12274369 12274386 AGCGAAATACAAGGCA 12274624 12274609 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000131.2 t3641 UENF/CEPLAC 131 2 SSR t3641.G001 V2 chr9 ATGATGATGGGATGGTGT 15495603 15495620 AGCGAAATACAAGGCA 15495845 15495830 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000133.1 t3641 msEstTsh-5 1 SSR t3641.G001 V2 chr2 ACGACTTTAGGAGCTGACC 40372111 40372129 AACTTCAACACCAAGACCAT 40372341 40372322 NA NA NA 10.1007/s11032-008-9174-6 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000136.1 t3641 msEstTsh-6 1 SSR t3641.G001 V2 chr2 ATGAATATTGTGGAGGAGGTT 10914640 10914660 TAGCAGTGCTTACAGCTCAA 10914845 10914826 NA NA NA 10.1007/s11032-008-9174-6 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000137.1 t3641 UENF/CEPLAC 135 1 SSR t3641.G001 V2 chr1 TGCTCTGAACAACACTGCT 24616170 24616188 AGGCTGAGGTGGTGCTACA 24616293 24616275 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000140.1 t3641 msEstTsh-7 1 SSR t3641.G001 V2 chr3 AGACCAGGAAAGAAGAGTCC 30478769 30478788 GGAGCTGTTAGGAGAATGC 30478920 30478902 NA NA NA 10.1007/s11032-008-9174-6 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000143.1 t3641 msEstTsh-8 1 SSR t3641.G001 V2 chr7 AACCCTTCATGAGACAATGA 6590742 6590761 CAGTCCCTTCTCTTCTGTGA 6590900 6590881 NA NA NA 10.1007/s11032-008-9174-6 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000146.1 t3641 msEstTsh-9 1 SSR t3641.G001 V2 chr5 TCAAATCTTGACCCCATAAC 1366751 1366770 CACTTTTGACACTTCAAGCA 1367056 1367037 NA NA NA 10.1007/s11032-008-9174-6 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000148.1 t3641 UENF/CEPLAC 144 1 SSR t3641.G001 V2 chr3 TAGTGGTGGTGGCATA 898865 898880 TGAGAATCATAGAGAGCCAT 899049 899030 NA NA NA 10.1007/s11032-006-9057-7 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000149.1 t3641 msEstTsh-11 1 SSR t3641.G001 V2 chr9 CTTTCTTCAAAGAAGGAAACAT 4466316 4466337 GGAGAAACACCTCTCATGTC 4466518 4466499 NA NA NA 10.1007/s11032-008-9174-6 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000163.1 t3641 TH1 1 SSR t3641.G001 V2 chr8 GGCTGGTTTCTTATTCACAG 2785519 2785538 CCAACTTAATATCTCCGCCT 2785962 2785943 NA NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000164.1 t3641 TH11 1 SSR t3641.G001 V2 chr6 GCCGTTATTAGTGACCAAAG 25641481 25641500 CGAGGCTTAACTGAAACAGA 25641584 25641565 NA NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000165.1 t3641 TH2 1 SSR t3641.G001 V2 chr4 TCTTCGTAACTATCGGAAACA 16603022 16603042 CTAGACGTGGAACTTTGAGG 16603406 16603387 NA NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000166.1 t3641 TH4 1 SSR t3641.G001 V2 chr4 CTTGTCGTCCTTCTTGTTTC 29197466 29197485 AACTGGAGGTCAGAGTCAAA 29197821 29197802 NA NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000167.1 t3641 TH8 1 SSR t3641.G001 V2 chr2 TCGACAACAACATTCTTTGA 30150162 30150181 TATTGCTGCTTCCTTCTTGT 30150309 30150290 NA NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000168.1 t3641 TH9 1 SSR t3641.G001 V2 chr1 GGATTTCTACTGCAAGCAAC 33823700 33823719 AACAAGATATCGAGGCAGAA 33823911 33823892 NA NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000169.1 t3641 TH10 1 SSR t3641.G001 V2 chr1 TTTGATCTCAAAGCAGGTTTA 4232916 4232936 GGTATGCATGTGCTAGTGTG 4233123 4233104 NA NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000001 t3641 mSI_26 1 SSR t3641.G001 V2 chr1 TGCTTTCAGGCCAATACA 3358259 3358275 CCTCTTGCTTCCGGTTT 3358403 3358386 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000002 t3641 mSI_88 1 SSR t3641.G001 V2 chr1 CGCCCTCCCCTTATTT 3480424 3480439 TCCTTTCCTTGCAGGTTT 3480661 3480644 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000003 t3641 mSI_89 1 SSR t3641.G001 V2 chr1 TTTTCCTTGTTCCTGCCT 3499660 3499677 ATTGAATGGGGTTGGTGT 3499829 3499812 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000004 t3641 mSI_32 1 SSR t3641.G001 V2 chr1 TGGGATGAATGAGAATGGT 3624707 3624727 TCATAACAACAACGGATTGAG 3624909 3624891 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000005 t3641 mTcCIR15 1 SSR t3641.G001 V2 chr1 CAGCCGCCTCTTGTTAG 3690788 3690805 TATTTGGGATTCTTGATG 3691023 3691007 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000006 t3641 mSI_73 1 SSR t3641.G001 V2 chr1 TTTACGGCTGCTTGTCC 3769203 3769219 AAGGTGCCCATAACTCAAA 3769480 3769462 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000007 t3641 mSI_101 1 SSR t3641.G001 V2 chr1 GATTGGCACGTCATCAAC 3926834 3926851 ATGCAATGAGAGGAGGAAA 3927067 3927049 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000008 t3641 mSI_102 1 SSR t3641.G001 V2 chr1 CAGTTTCCACTTCTAATCTTGT 3957862 3957883 TGTACTTTCCTATGTTTTACCC 3957976 3957955 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000009 t3641 mSI_140 1 SSR t3641.G001 V2 chr1 CTCTGCGGTGGAAGAAA 3978367 3978383 AGTCATTGCCGACCTCTT 3978595 3978578 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000010 t3641 mSI_141 1 SSR t3641.G001 V2 chr1 AACCTTGAAGCCAAGCA 4000967 4000983 GCATGTAGGGTAAAGCCA 4001227 4001210 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000011 t3641 mSI_103 1 SSR t3641.G001 V2 chr1 CAGGCTGCCATTTTCTC 4011422 4011438 TCAAGGACTGCTCCAAAA 4011630 4011613 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000012 t3641 mSI_366 1 SSR t3641.G001 V2 chr1 TCATCACACTCGAAAACCTC 4043445 4043464 ATCTTCTGACTTTTCAAACCCT 4043680 4043659 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000013 t3641 mSI_367 1 SSR t3641.G001 V2 chr1 TTGTGCAATCGAGAAGG 4044478 4044494 ATCCACGTCGTCAAACA 4044740 4044724 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000014 t3641 mSI_369 1 SSR t3641.G001 V2 chr1 CGATGCAGAAACTGATGAA 4047592 4047610 TGTCTTGCCTTTTGGGA 4047869 4047853 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000016 t3641 mSI_370 1 SSR t3641.G001 V2 chr1 CCTCAACCAAAACCCATC 4060534 4060551 TTTTGCCTGTTTTCTTGCT 4060765 4060747 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000017 t3641 mSI_372 1 SSR t3641.G001 V2 chr1 GCGCTCTCTCGCAGTT 4063645 4063660 AATTTACTCGGCGCATTT 4063784 4063767 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000018 t3641 mSI_375 1 SSR t3641.G001 V2 chr1 GTTGAAAGTTAGTCATTCCAGAG 4081637 4081659 TTGTGGAGACCAAGTGAAA 4081893 4081875 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000019 t3641 mSI_107 1 SSR t3641.G001 V2 chr1 GAAAATACTCCGTAACAACCA 4125178 4125198 ACCTTACCAACACCACACA 4125398 4125380 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000020 t3641 mTcCIR356 1 SSR t3641.G001 V2 NA GGGGTTGCTTTCTGCTT 0 0 AAAACTTGGCGGAGGAG 0 0 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000021 t3641 mSI_112 1 SSR t3641.G001 V2 chr1 GCTTGCACTGCTATCCCT 4222872 4222889 CGCCACTTACAAACCCA 4223140 4223124 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000022 t3641 mSI_113 1 SSR t3641.G001 V2 chr1 TTTCAGGATGTTAGATGGGA 4242303 4242322 ATGTCATCATCCAAGGCA 4242560 4242543 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000026 t3641 mSI_7 1 SSR t3641.G001 V2 chr4 TTTCATGGAGGTTGGGA 20680 20696 GTTGCACAAAGGATGGG 20856 20840 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000027 t3641 mSI_34 1 SSR t3641.G001 V2 chr4 CCCAACCAACCAATATCC 27538 27556 GAGGGATTCGACAGAGACA 27804 27787 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000028 t3641 mSI_8 1 SSR t3641.G001 V2 chr4 GAGGGATTCGACAGAGACA 27538 27556 CCCAACCAACCAATATCC 27804 27787 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000029 t3641 mTcCir312 1 SSR t3641.G001 V2 chr4 GCAACGCAACATTCTCC 31631 31647 ACGCAAAACCAAAACACA 31775 31758 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000030 t3641 mSI_35 1 SSR t3641.G001 V2 chr4 TCCCGATAGCCTCAACA 36770 36788 ACAAATTCCTTCATCCCCT 36891 36875 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000031 t3641 mSI_2 1 SSR t3641.G001 V2 chr4 CATCGAAAGTCAAGAAAAGG 42676 42695 ATTGAAATGGTGGTTTGGT 42943 42925 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000033 t3641 mSI_303 1 SSR t3641.G001 V2 chr4 CAAGTCGTTGGGAGGG 119841 119856 AAAGTTTCAATCCCATTTCC 120095 120076 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000034 t3641 mSI_458 1 SSR t3641.G001 V2 chr4 GACACGAGATGTATCCTGACCA 135926 135947 TGCAACCGTGAGCATTTTGT 136209 136190 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000035 t3641 mSI_460 1 SSR t3641.G001 V2 chr4 TGAGAACAAAGCCAAAGAAAGGA 138755 138777 CCGAGACAAAGCCCAGAAG 138871 138853 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000036 t3641 mSI_308 1 SSR t3641.G001 V2 chr4 GCTTCTGGGCTTTGTCTC 138852 138869 CAGCACGGTAGCCATAGA 139130 139113 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000037 t3641 mSI_309 1 SSR t3641.G001 V2 chr4 GGCTTGGAGGAGCAGA 140783 140798 GAGAAACAGAGAGCGACAGA 141042 141023 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000038 t3641 mSI_310 1 SSR t3641.G001 V2 chr4 GGCCTTCATGGGTTTTAG 141567 141584 TTCAAATCCCCATTTTCC 141818 141801 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000039 t3641 mSI_315 1 SSR t3641.G001 V2 chr4 CAAGGGGTCTTGGGTTT 232239 232255 AATGATGGCGATGGAGA 232444 232428 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000045 t3641 mSI_39 1 SSR t3641.G001 V2 chr4 CCATTTATTGACACTGGGG 275632 275650 CTCTGCCCATGCTTCAC 275870 275854 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000046 t3641 mSI_42 1 SSR t3641.G001 V2 chr4 AGCCTTCCAATGTGGTG 340093 340109 CAGTTGGGCTGGTGTCT 340301 340285 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000047 t3641 mSI_46 1 SSR t3641.G001 V2 chr4 CTGCCACAGAATCACTCAA 424396 424414 AAATCCCACCACCTTCC 424653 424637 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000048 t3641 mSI_54 1 SSR t3641.G001 V2 chr4 GCCAATGGACTCCTCAA 746761 746777 ACTGCTTTCCCACTCTCC 747017 747000 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000049 t3641 mSI_294 1 SSR t3641.G001 V2 chr4 ACAATGAGGTGAGGGGA 1699201 1699217 ATGTGAGATGTGGTGCCT 1699438 1699421 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000062 t3641 mEstTcCepec16-4 1 SSR t3641.G001 V2 chr1 TCAATTCCAACACCAAAAC 34965809 34965827 CTGATCTGGGTCTTTGTTCA 34966018 34965999 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000063 t3641 mEstTcCepecR20-4 1 SSR t3641.G001 V2 chr3 TCAGAACATTTGCACATCA 33905359 33905378 TACAGTTACCCCAAGGATGA 33905567 33905549 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000064 t3641 msEstTsh-10 1 SSR t3641.G001 V2 NA ACCCCTCAATCTCACACATA 0 0 GCTTGGCGCTCTTAGTATC 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000065 t3641 mEstTcCepec47 1 SSR t3641.G001 V2 chr9 CTATGATTTCACTCCCCAAC 1698891 1698910 ATCATAGCCTTATCGCATTC 1699110 1699091 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000066 t3641 mEstTcCepec60 1 SSR t3641.G001 V2 chr6 GGAAGGGCTTAGTTTTAGAG 22270141 22270160 GGATCGGAGAGTATTAGGAT 22270299 22270280 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000067 t3641 mEstTcCepec16-8 1 SSR t3641.G001 V2 chr2 TTCTTGTCCTTCCCTCTCTC 4585270 4585289 CCAGTCAAAACACCTAACCA 4585490 4585471 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000068 t3641 mEstTcCepec13-1 1 SSR t3641.G001 V2 chr3 ACTGATGAGAGGGTAGCTGT 2279505 2279524 AGTCCTCCTTTTCCTTCAAA 2279744 2279725 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000069 t3641 mEstTcCepec24 1 SSR t3641.G001 V2 NA GATTTCTTTTCTTCGCTTCC 0 0 AGACTGGGTTTTAGCTCCAC 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000070 t3641 mEstTcCepec13 1 SSR t3641.G001 V2 chr3 TGCTTAAGGAGGTGTTTGAC 26457224 26457243 GAATCACCCTCCTTGATTTC 26457419 26457400 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000071 t3641 mEstTcCepec13-4 1 SSR t3641.G001 V2 chr10 AAGCACAACCAAAGACAAAA 11046295 11046314 ACTTTGGGTGGAAAATGAAT 11046454 11046435 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000072 t3641 mEstTcCepec13-5 1 SSR t3641.G001 V2 chr6 GGGGAAAGAAGTTGGTTTTA 7547503 7547522 CTCAAATCTCTCCCTCCCTA 7547712 7547693 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000073 t3641 mEstTcCepec31 1 SSR t3641.G001 V2 chr3 ACTGATGAGAGGGTAGCTGT 2279505 2279524 AGTCCTCCTTTTCCTTCAAA 2279744 2279725 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000074 t3641 mEstTcCepec20-5 1 SSR t3641.G001 V2 chr5 AGAAAATGTTCCATCCACAA 39251975 39251994 GGAGAGGAAAGGCTACTTCA 39252237 39252218 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000075 t3641 mEstTcCepec1 1 SSR t3641.G001 V2 chr3 CAGGCCTTTATTTGTCACAC 5256202 5256221 TATTGTCGTCGCTGATACCT 5256621 5256602 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000076 t3641 mEstTcCepec13-3 1 SSR t3641.G001 V2 chr1 AATTCAAGCCCAAATCTACC 5502664 5502683 TGGAGACATGTTTCATAGGG 5502806 5502787 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000077 t3641 mEstTcCepec2 1 SSR t3641.G001 V2 chr2 AGGGGTGTTTTTATTGTCGT 3985849 3985868 TCTTCCTTTTCCTTTCATCC 3986059 3986042 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000078 t3641 mEstTcCepec6 1 SSR t3641.G001 V2 chr6 CAATCTCAAACGCTCAAAAC 22269650 22269669 TTGATCAGGGTTCTGTTGAC 22270243 22270224 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000079 t3641 mEstTcCepec9 1 SSR t3641.G001 V2 chr2 CGTTCAATCCTTCTCAGTTG 3985948 3985967 CCATGGAAATTGCAGATAAC 3986206 3986187 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000080 t3641 mEstTcCepec16-2 1 SSR t3641.G001 V2 NA TAAACCTTCCATCTCCCATT 0 0 TCCATAGCTCGCTTGAATTA 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000081 t3641 mEstTcCepec49 1 SSR t3641.G001 V2 chr5 AGGACGATGAAGAGGAAAG 22081530 22081549 ATTAGACACACACACGCACA 22081785 22081767 NA NA 0 0 NA NA 10.1371/journal.pone.0170799 28187131 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000152 t3641 c45A 1 SSR t3641.G001 V2 NA AGAAGGGTTAGCCCCAGTGT 0 0 TCCCGAAATCGAAATTCAAG 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000153 t3641 c5993 1 SSR t3641.G001 V2 chr5 TCAAACGCTTAAAAGATAAAGAAGA 35204217 35204241 TGGGGTTTTGGTTTTCTGAC 35204386 35204368 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000154 t3641 c2723 1 SSR t3641.G001 V2 NA AACTCTTCAGTCTGGCAAACAT 0 0 AAAGTAGCCTTTCCAGAGGAAC 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000155 t3641 c4949 1 SSR t3641.G001 V2 chr5 AGGTGATCAGAAAATGGGAAC 4570185 4570205 ACTGAGTCCACAACTGATCCTT 4570451 4570430 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000156 t3641 c8207 1 SSR t3641.G001 V2 NA GAGACGATATTGGGGAGTACAA 0 0 CTTCCCCTTTTGTCTCTACCTT 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000157 t3641 c2987 1 SSR t3641.G001 V2 NA GCTGCTACTTCTGCTTATGTTTG 0 0 TAGCTAGCCTTCTGGAAAATTG 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000158 t3641 c5718 1 SSR t3641.G001 V2 NA TAATGGTTCCTGCAAACTCTCT 0 0 CAGGCTCTTACTCTTCATCGTT 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000159 t3641 c4546 1 SSR t3641.G001 V2 NA TGCTTGGGAGAATAGTTTTCAG 0 0 TACATTGCATTTACCACCTGAG 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000160 t3641 c1773 1 SSR t3641.G001 V2 chr10 TATGCTTTGTGTCTGGCTATTG 3954902 3954923 CCTCCACTTCTCAAACAGACTT 3955024 3955003 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000161 t3641 c692A 1 SSR t3641.G001 V2 NA ATCAAGATCCCCAACATACAAC 0 0 AAACAAGGCAAGGAGGTAATGT 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000162 t3641 c692B 1 SSR t3641.G001 V2 chr1 ATCAAGATCCCCAACATACAAC 2940789 2940810 TCCCCTTTCTTTCTCCTTTT 2941076 2941057 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000163 t3641 c692C 1 SSR t3641.G001 V2 chr1 ATCAAGATCCCCAACATACAAC 2940789 2940810 TCCCCTTTCTTTCTCCTTTT 2941076 2941057 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000164 t3641 c3464 1 SSR t3641.G001 V2 chr1 TAAAGAGGCCACATCAGAGTTT 31835427 31835446 GCAGAAAAATATTGGCTACCAG 31835625 31835604 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000165 t3641 c806 1 SSR t3641.G001 V2 chr8 GAATCACATGAAACTCCTCCAT 11911202 11911223 AAAGATTCTTGGACCTGGACTT 11912098 11912077 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000166 t3641 c366 1 SSR t3641.G001 V2 NA TCACTATCAAACTCGTGCAAAC 0 0 GAGACATGTCACTGCATTTTGT 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000167 t3641 c4063 1 SSR t3641.G001 V2 chr3 GACGAGTGGGAGGAACAGTAT 35510415 35510436 AAGTCCGCAATCCTACTATCAA 35510554 35510534 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000168 t3641 c1143 1 SSR t3641.G001 V2 chr5 CCCTCCTTTACTTCTTGACCTT 37158989 37159010 CCCTCATGATCAAGCTACTTTT 37159181 37159160 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000169 t3641 c513 1 SSR t3641.G001 V2 NA AATTTCAAAGGGCTGGAGAC 0 0 TGGAGGGTTTAGGAATGTTATG 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000170 t3641 c45 1 SSR t3641.G001 V2 NA ATAACCCACTTCCCTTCAACTT 0 0 CGCCTTCTCTTCGATAAATTC 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000171 t3641 c573 1 SSR t3641.G001 V2 chr7 AACCAAACTCTGGTCTTTTTCC 1581083 1581104 GAATTGGGTGAATCTGAAGTGT 1581319 1581298 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000172 t3641 c70 1 SSR t3641.G001 V2 NA GAGAGAGACTTCAACAAAGGAGA 0 0 TCAAGTGGTCATCTACATACGC 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000173 t3641 c3202 1 SSR t3641.G001 V2 NA GAGCAGCACTAGGACAAGAGAT 0 0 ATGGTAAAGAGGAAGAGGAACC 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000174 t3641 c3202B 1 SSR t3641.G001 V2 NA AGAGATGAGGAGAACAACAGGA 0 0 ATGGTAAAGAGGAAGAGGAACC 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000175 t3641 c83 1 SSR t3641.G001 V2 NA CTAAGTTGCCTGAAGAAAGGAA 0 0 TCCCAAGCTTTAAACAGAGCTA 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000176 t3641 c4380 1 SSR t3641.G001 V2 NA GCTCTTCAATTGCAACTTATCC 0 0 CATATTTTCAACACCTCGCTCT 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000177 t3641 c4943 1 SSR t3641.G001 V2 chr4 ATCATCAGCACAGCTTCAAGTA 22973843 22973864 TAGAATATCGGAGCGAGTTCAT 22974231 22974210 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000178 t3641 c664 1 SSR t3641.G001 V2 NA CTACTAGCTTCCTTGCTTGCAT 0 0 CCATCTTGTAAGTCTCGAGGTC 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000179 t3641 c109 1 SSR t3641.G001 V2 NA AAAGGACCCAAGGTAATCAAGT 0 0 ATTACAAGGAAAAAGGGAGACC 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000180 t3641 c733 1 SSR t3641.G001 V2 NA TTGCCAGGTCTACTCAAAAGTT 0 0 GGTGGAAGATATCAACCTGAAA 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000181 t3641 c784 1 SSR t3641.G001 V2 NA TTTTCAATATGACCCCTACTGC 0 0 AGAAAGATCTGCGAGGTACTTG 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000182 t3641 c122 1 SSR t3641.G001 V2 chr7 GTACAATGCATCCAACAATGAG 1314895 1314916 ACCATAGTGCTGGAGATACCAC 1315003 1314982 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000183 t3641 c1410 1 SSR t3641.G001 V2 NA ACCTCGCGTTCATGATATCTAC 0 0 GACGGACACGACTTCTTCTAAC 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000184 t3641 c180 1 SSR t3641.G001 V2 NA AATGTAACCGTTCTTACGGATG 0 0 ATTTTCCTCTTCGAAGCCTTAC 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000185 t3641 c3128 1 SSR t3641.G001 V2 NA GTAGGGCAGGAGGAGTTCTATT 0 0 CTTCTCGGGGTAGTAATGACAG 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000186 t3641 c193A 1 SSR t3641.G001 V2 chr9 GTCACGGAATGGTTAGAGTGAT 38253340 38253361 GGAGCTATTACAAGTGCACACA 38253592 38253571 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000187 t3641 c193B 1 SSR t3641.G001 V2 chr9 TCAAACTCATCTCCTCCAGATT 38254335 38254356 CACAAAGAAGAAGGTTGAAAGG 38254631 38254610 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000188 t3641 c203A 1 SSR t3641.G001 V2 chr6 CCAAGAGAGAAACAAGGAGAGA 25210601 25210622 ATGCTCAAGGATACGATTATGG 25210817 25210796 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000189 t3641 c203B 1 SSR t3641.G001 V2 chr6 TAATACTGCAAATCTCCGATCC 25207298 25207319 AACAGTACCAATACCAGCAACC 25207514 25207493 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000190 t3641 c370A 1 SSR t3641.G001 V2 NA TTTCCCTGTTTCTTCTGTGTCT 0 0 ATCCTCAAGGACTCTCTCATCA 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000191 t3641 c370B 1 SSR t3641.G001 V2 chr3 TTTCGCTGTATCAACTGTATCG 394295 394316 GTATCAAAATTCGGTGACCACT 394536 394515 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000192 t3641 c1251 1 SSR t3641.G001 V2 NA AAGGTACCACTGAACCAAACAG 0 0 CAGAGTCATGGAGCCTACTACC 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000193 t3641 c1974 1 SSR t3641.G001 V2 chr3 GCTTCTGTTTCTGTTCCTGTTG 33389678 33389699 AACCGGAGGTTATTTGTTTCTC 33389862 33389842 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000194 t3641 c2674 1 SSR t3641.G001 V2 chr9 CTTGCACATGAAGTTGATTCTG 3178520 3178541 TCTAATGCCATACCAAAAGGAC 3178668 3178647 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000195 t3641 c3481 1 SSR t3641.G001 V2 chr3 GGAGGATGTTAGTGCGATAGAG 1805084 1805105 ACCTATGCTCTTCTTCTGTCCA 1805346 1805325 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000196 t3641 c239 1 SSR t3641.G001 V2 chr4 CACGAATTTTCTTCAACTCCTC 28239626 28239647 ACATGGATGATAGTGATGCAGA 28239869 28239848 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000197 t3641 c345 1 SSR t3641.G001 V2 chr10 CTATGAGCAAACGGATCTTTTC 740886 740905 TTCTTGGGTTAATACCCTTGTG 741062 741041 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000198 t3641 c339 1 SSR t3641.G001 V2 chr8 AAGGCATTGAGTTCTTCAGTGT 3111846 3111867 GGGGAAGATCCCATATCTAAAG 3111973 3111952 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000199 t3641 c430 1 SSR t3641.G001 V2 NA AAGCCTAGGGGATACAAAAGAG 0 0 CAGAAAATCCAGCTTTTAGTGG 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000200 t3641 c651 1 SSR t3641.G001 V2 chr2 GTTCAATCCTCTGTTTCTTTGG 10657516 10657537 AAGAAGAAGAAGGTGGGAAAAG 10657624 10657603 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000201 t3641 c513 1 SSR t3641.G001 V2 chr1 GCTTGTACACGTGAGAAGATGA 3098013 3098034 TTACTAACGGAGGGTATGATGG 3098171 3098150 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000202 t3641 c2763F 1 SSR t3641.G001 V2 chr5 CATATAAGGAGGCAGTGAGAGG 18866942 18866963 TTATGGGAAGTTTGACCATAGG 18867078 18867057 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000203 t3641 c2723 1 SSR t3641.G001 V2 chr6 GTCCATCAAATGGTTCGAGTAT 22350327 22350348 ATGTTTGCCAGACTGAAGAGTT 22350428 22350409 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000204 t3641 c3359 1 SSR t3641.G001 V2 chr9 CCTAAAGTTTTGTCCATGAAGG 31406348 31406369 CTTCAAAAGGACATGTTTCTCC 31407010 31406989 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000205 t3641 c4949 1 SSR t3641.G001 V2 chr5 CTGACCATCTTTCTAGGTGAGC 4570481 4570502 GATTTGAGAGGAAAATGAGCAG 4570618 4570597 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000206 t3641 c8207 1 SSR t3641.G001 V2 chr5 AACTCTCGGATTCTTTCTTTCC 26082663 26082684 CTTCCCCTTTTGTCTCTACCTT 26082766 26082746 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000207 t3641 c2987 1 SSR t3641.G001 V2 chr4 GTCCCCAAGAACTTTCTCTTCT 27068984 27069004 GGCATTGACCTATCATTCTTTC 27069162 27069141 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000208 t3641 c5718 1 SSR t3641.G001 V2 NA CGGAAAAACGATGAAGAGTAAG 0 0 ATGCCCTGATCAGTTTCTTCTA 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000209 t3641 c246 1 SSR t3641.G001 V2 NA ATCTATCCCCCATAGGAAACAC 0 0 TTTTATCTGAAGAGGGTTGGAG 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000210 t3641 c297 1 SSR t3641.G001 V2 NA ACCATGAAAAAGGCCTACTCTT 0 0 CCCTCTTCCGTTAGAGAGATTT 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000211 t3641 c295 1 SSR t3641.G001 V2 NA GTCATATACAACCCCGACGTAT 0 0 ATCTCTCACGAGGCCATAAAT 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000212 t3641 c351 1 SSR t3641.G001 V2 chr5 AGAGAGGGAAATTACAGCCTTC 36138656 36138677 ACAAAGGTATGAGAGCAGCATT 36138882 36138863 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000213 t3641 c431B 1 SSR t3641.G001 V2 NA GGAAATGTTTGGAACAGAGAAC 0 0 CAATATCTTGAAAGGCGAAGAG 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000214 t3641 c431A 1 SSR t3641.G001 V2 NA GAGAGTGCTGGAGAGAAGAGAA 0 0 GTTCTGGGGCCCTACTTACTAT 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000215 t3641 c399A 1 SSR t3641.G001 V2 NA TCTTATTCTGCCATATGCACTG 0 0 TGCTGAGGATGGATATACTGTG 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000216 t3641 c399B 1 SSR t3641.G001 V2 chr8 CTTCTTCCTTGACTTCAACAGG 17554950 17554971 TATTCAAGAGGCCCTTAACAAG 17555230 17555209 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000217 t3641 c432 1 SSR t3641.G001 V2 NA AATCGGTCTTCAAGTTGTCACT 0 0 ATATTCTCTCCCCCAGTTTCAT 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000218 t3641 c559 1 SSR t3641.G001 V2 chr2 TGTACCATAGCTCAGGACATCA 7966607 7966628 AAGCTGCCTTAACATCAGCTAC 7966858 7966837 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000219 t3641 c663A 1 SSR t3641.G001 V2 NA GCTCCTCTCGATCTTATTCGTA 0 0 CCCACGAAGATCTCTACGTACT 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000220 t3641 c663B 1 SSR t3641.G001 V2 NA TATGGTTTTGATATCCGGTAGG 0 0 AAACACCCATCCAAACAAGTAG 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000221 t3641 c8097 1 SSR t3641.G001 V2 chr1 GTGATGGGAAACAGACTAGGAG 31267988 31268007 CGGAAGTCTGAAACCATTAGAG 31269611 31269590 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000222 t3641 c618 1 SSR t3641.G001 V2 chr6 CATAAAATCAGCGGGTAGAGAG 18226102 18226123 GTGGAAAGACGAAAGTCTTCAG 18226284 18226263 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000223 t3641 c1149 1 SSR t3641.G001 V2 NA AAAAATGTCATTCCCACCAG 0 0 CTCGGGTATGGATCTTCTTGTA 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000224 t3641 c2564 1 SSR t3641.G001 V2 NA TTGCATAAAGTCATCACCAGAG 0 0 ACAATCCTCGAAAGGCATACTA 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000225 t3641 c1295 1 SSR t3641.G001 V2 chr9 TACATTCTCAAACGTCATCTCG 8330805 8330825 CTGCTGTTGTTGGGATATTTG 8330968 8330947 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000226 t3641 c7101 1 SSR t3641.G001 V2 NA ATGGACATAGGTTCTGCTTTTG 0 0 GTATGAGAAATGGGATGCTGAT 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000227 t3641 c7219 1 SSR t3641.G001 V2 chr3 TTAGCAGTTGTCAAAGTCGAAC 26762685 26762706 GGATTGTAAGAATTGGGGTTCT 26762789 26762768 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000228 t3641 c7297 1 SSR t3641.G001 V2 NA CGGTCTTTCAGTCTTTTCAATC 0 0 GACCCATTCAGCTTGAACTTAG 0 0 NA NA 0 0 NA NA 10.1371/journal.pone.0151074 26949967 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000229 t3641 mTcCIR1 1 SSR t3641.G001 V2 chr8 GCAGGGCAGGCTCAGTGAAGCA 271858 271876 TGGGCAACCAGAAAACGAT 271988 271967 NA NA 0 0 NA NA 10.1021/acs.jafc.5b01462 25892108 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000230 t3641 mTcCIR6 1 SSR t3641.G001 V2 chr6 TTCCCTCTAAACTACCCTAAAT 219714 219735 TAAAGCAAAGCAATCTAACATA 220037 220016 NA NA 0 0 NA NA 10.1021/acs.jafc.5b01462 25892108 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000231 t3641 mTcCIR8 1 SSR t3641.G001 V2 chr9 CTAGTTTCCCATTTACCA 22521863 22521880 TCCTCAGCATTTTCTTTC 22522167 22522150 NA NA 0 0 NA NA 10.1021/acs.jafc.5b01462 25892108 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000232 t3641 mTcCIR11 1 SSR t3641.G001 V2 chr2 TTTGGTGATTATTAGCAG 40092105 40092122 GATTCGATTTGATGTGAG 40092406 40092389 NA NA 0 0 NA NA 10.1021/acs.jafc.5b01462 25892108 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000233 t3641 mTcCIR12 1 SSR t3641.G001 V2 chr4 TCTGACCCCAAACCTGTA 24533112 24533129 ATTCCAGTTAAAGCACAT 24533299 24533282 NA NA 0 0 NA NA 10.1021/acs.jafc.5b01462 25892108 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000234 t3641 mTcCIR15 1 SSR t3641.G001 V2 chr1 CAGCCGCCTCTTGTTAG 3690788 3690805 TATTTGGGATTCTTGATG 3691023 3691007 NA NA 0 0 NA NA 10.1021/acs.jafc.5b01462 25892108 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000235 t3641 mTcCIR18 1 SSR t3641.G001 V2 chr4 GATAGCTAAGGGGATTGAGGA 15301589 15301609 GGTAATTCAATCATTTGAGGATA 15301919 15301899 NA NA 0 0 NA NA 10.1021/acs.jafc.5b01462 25892108 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000236 t3641 mTcCIR24 1 SSR t3641.G001 V2 chr9 TTTGGGGTGATTTCTTCTGA 6355181 6355200 TCTGTCTCGTCTTTTGGTGA 6355379 6355360 NA NA 0 0 NA NA 10.1021/acs.jafc.5b01462 25892108 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000237 t3641 mTcCIR25 1 SSR t3641.G001 V2 chr6 CTTCGTAGTGAATGTAGGAG 22448696 22448715 TTAGGTAGGTAGGGTTATCT 22448851 22448832 NA NA 0 0 NA NA 10.1021/acs.jafc.5b01462 25892108 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000238 t3641 mTcCIR60 1 SSR t3641.G001 V2 chr2 CGCTACTAACAAACATCAAA 19251916 19251935 AGAGCAACCATCACTAATCA 19252110 19252091 NA NA 0 0 NA NA 10.1021/acs.jafc.5b01462 25892108 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000239 t3641 mTcCIR1 1 SSR t3641.G001 V2 chr8 GCAGGGCAGGCTCAGTGAAGCA 271858 271876 TGGGCAACCAGAAAACGAT 271988 271967 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000240 t3641 mTcCIR2 1 SSR t3641.G001 V2 chr5 CAGGGAGCTGTGTTATTGGTCA 12434320 12434341 AGTTATTGTCGGCAAGGAGGAT 12434573 12434552 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000241 t3641 mTcCIR3 1 SSR t3641.G001 V2 chr2 CATCCCAGTATCTCATCCATTCAGT 3877423 3877443 CTGCTCATTTCTTTCATATCA 3877631 3877607 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000242 t3641 mTcCIR4 1 SSR t3641.G001 V2 NA CGACTAAAACCCAAACCATCAA 0 0 AATTATTAGGCAACCCGAACTT 0 0 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000243 t3641 mTcCIR6 1 SSR t3641.G001 V2 chr6 TTCCCTCTAAACTACCCTAAAT 219714 219735 TAAAGCAAAGCAATCTAACATA 220037 220016 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000244 t3641 mTcCIR7 1 SSR t3641.G001 V2 chr7 ATGCGAATGACAACTGGT 6182225 6182242 GCTTTCAGTCCTTTGCTT 6182382 6182365 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000245 t3641 mTcCIR8 1 SSR t3641.G001 V2 chr9 CTAGTTTCCCATTTACCA 22521863 22521880 TCCTCAGCATTTTCTTTC 22522167 22522150 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000246 t3641 mTcCIR9 1 SSR t3641.G001 V2 chr6 ACCATGCTTCCTCCTTCA 25804448 25804465 ACATTTATACCCCAACCA 25804702 25804685 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000247 t3641 mTcCIR10 1 SSR t3641.G001 V2 chr5 ACAGATGGCCTACACACT 6304779 6304796 CAAGCAAGCCTCATACTC 6304986 6304969 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000248 t3641 mTcCIR11 1 SSR t3641.G001 V2 chr2 TTTGGTGATTATTAGCAG 40092105 40092122 GATTCGATTTGATGTGAG 40092406 40092389 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000249 t3641 mTcCIR12 1 SSR t3641.G001 V2 chr4 TCTGACCCCAAACCTGTA 24533112 24533129 ATTCCAGTTAAAGCACAT 24533299 24533282 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000250 t3641 mTcCIR13 1 SSR t3641.G001 V2 chr7 CAGTCTAACAAAGGTGAG 2888565 2888582 TGCCCCACTTGACAACTA 2888824 2888807 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000251 t3641 mTcCIR15 1 SSR t3641.G001 V2 chr1 CAGCCGCCTCTTGTTAG 3690788 3690805 TATTTGGGATTCTTGATG 3691023 3691007 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000252 t3641 mTcCIR16 1 SSR t3641.G001 V2 NA ACCTTCACCAGCTCACC 0 0 TAAATTCTACTAGCAAATTACC 0 0 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000253 t3641 mTcCIR17 1 SSR t3641.G001 V2 chr4 AAGGATGAAGGATGTAAGAGAG 17418303 17418324 CCCATACGAGCTGTGAGT 17418581 17418566 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000254 t3641 mTcCIR18 1 SSR t3641.G001 V2 chr4 GATAGCTAAGGGGATTGAGGA 15301589 15301609 GGTAATTCAATCATTTGAGGATA 15301919 15301899 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000255 t3641 mTcCIR19 1 SSR t3641.G001 V2 chr2 CACAACCCGTGCTGATTA 1392298 1392317 GTTGTTGAGGTTGTTAGGAG 1392767 1392750 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000256 t3641 mTcCIR21 1 SSR t3641.G001 V2 chr3 GTCGTTGTTGATGTCGGT 20073333 20073350 GGTGAGTGTGTGTGTTTGTCT 20073499 20073479 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000257 t3641 mTcCIR22 1 SSR t3641.G001 V2 chr1 ATTCTCGCAAAAACTTAG 36352662 36352679 GATGGAAGGAGTGTAAATAG 36352954 36352935 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000258 t3641 mTcCIR24 1 SSR t3641.G001 V2 chr9 TTTGGGGTGATTTCTTCTGA 6355181 6355200 TCTGTCTCGTCTTTTGGTGA 6355379 6355360 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000259 t3641 mTcCIR25 1 SSR t3641.G001 V2 chr6 CTTCGTAGTGAATGTAGGAG 22448696 22448715 TTAGGTAGGTAGGGTTATCT 22448851 22448832 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000260 t3641 mTcCIR26 1 SSR t3641.G001 V2 chr8 GCATTCATCAATACATTC 5601110 5601127 GCACTCAAAGTTCATACTAC 5601413 5601394 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000261 t3641 mTcCIR28 1 SSR t3641.G001 V2 chr6 GATCAATCAGAAGCAAACACAT 24639739 24639760 TAAAGCAGCCTACCAAGAAAAG 24640074 24640053 NA NA 0 0 NA NA 10.1046/j.1365-294x.1999.00802.x 10632866 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000262 t3641 TH1 1 SSR t3641.G001 V2 chr8 CCAACTTAATATCTCCGCCT 2785519 2785538 GGCTGGTTTCTTATTCACAG 2785962 2785943 NA NA 0 0 NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000263 t3641 TH2 1 SSR t3641.G001 V2 chr4 TCTTCGTAACTATCGGAAACA 16603022 16603042 CTAGACGTGGAACTTTGAGG 16603406 16603387 NA NA 0 0 NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000264 t3641 TH3 1 SSR t3641.G001 V2 chr9 TTTAAACAATCAGTTTAACCC 604138 604158 ATTGTTGGTCGGATTACAAG 604393 604374 NA NA 0 0 NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000265 t3641 TH4 1 SSR t3641.G001 V2 chr4 AACTGGAGGTCAGAGTCAAA 29197466 29197485 CTTGTCGTCCTTCTTGTTTC 29197821 29197802 NA NA 0 0 NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000266 t3641 TH5 1 SSR t3641.G001 V2 chr5 TCTCTTCTTCTTGATTGATCG 18876182 18876202 GTCGTAGTCGGAGTCAAGTC 18876335 18876316 NA NA 0 0 NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000267 t3641 TH6 1 SSR t3641.G001 V2 NA ACAATCGCAGTCGTAATCTC 0 0 CTCTCCAGTGAAATTGCTTC 0 0 NA NA 0 0 NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000268 t3641 TH7 1 SSR t3641.G001 V2 NA AATTGGCACGAGTATCTTTG 0 0 GTCACTTGAACTCCGATCAT 0 0 NA NA 0 0 NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000269 t3641 TH8 1 SSR t3641.G001 V2 chr2 TCGACAACAACATTCTTTGA 30150162 30150181 TATTGCTGCTTCCTTCTTGT 30150309 30150290 NA NA 0 0 NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000270 t3641 TH9 1 SSR t3641.G001 V2 chr1 GGATTTCTACTGCAAGCAAC 33823700 33823719 AACAAGATATCGAGGCAGAA 33823911 33823892 NA NA 0 0 NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000271 t3641 TH10 1 SSR t3641.G001 V2 chr1 TTTGATCTCAAAGCAGGTTTA 4232916 4232936 GGTATGCATGTGCTAGTGTG 4233123 4233104 NA NA 0 0 NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000272 t3641 TH11 1 SSR t3641.G001 V2 chr6 CGAGGCTTAACTGAAACAGA 25641481 25641500 GCCGTTATTAGTGACCAAAG 25641584 25641565 NA NA 0 0 NA NA 10.1007/s12041-009-0030-1 19700860 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000273 t3641 MTcCIR7-Y16981 1 SSR t3641.G001 V2 chr7 ATGCGAATGACAACTGGT 6182225 6182242 GCTTTCAGTCCTTTGCTT 6182382 6182365 NA NA 0 0 NA NA 10.1007/s00122-004-1762-1 15551041 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000274 t3641 MTcCIR18-Y16991 1 SSR t3641.G001 V2 chr4 GATAGCTAAGGGGATTGAGGA 15301589 15301609 GGTAATTCAATCATTTGAGGATA 15301919 15301899 NA NA 0 0 NA NA 10.1007/s00122-004-1762-1 15551041 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000275 t3641 MTcCIR40-AJ271943 1 SSR t3641.G001 V2 chr3 AATCCGACAGTCTTTAATC 14462884 14462902 CCTAGGCCAGAGAATTGA 14463158 14463141 NA NA 0 0 NA NA 10.1007/s00122-004-1762-1 15551041 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000276 t3641 MTcCIR22-Y16995 1 SSR t3641.G001 V2 NA ATTCTCGCAAAAACTTAG 0 0 GATGAAGGAGTGTAAATAG 0 0 NA NA 0 0 NA NA 10.1007/s00122-004-1762-1 15551041 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000277 t3641 MTcCIR24-Y16996 1 SSR t3641.G001 V2 chr9 TTTGGGGTGATTTCTTCTGA 6355181 6355200 TCTGTCTCGTCTTTTGGTGA 6355379 6355360 NA NA 0 0 NA NA 10.1007/s00122-004-1762-1 15551041 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000278 t3641 MTcCIR15-Y16988 1 SSR t3641.G001 V2 chr1 CAGCCGCCTCTTGTTAG 3690788 3690805 TATTTGGGATTCTTGATG 3691023 3691007 NA NA 0 0 NA NA 10.1007/s00122-004-1762-1 15551041 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000279 t3641 MTcCIR33-AJ271826 1 SSR t3641.G001 V2 chr4 TGGGTTGAAGATTTGGT 28292991 28293007 CAACAATGAAAATAGGCA 28293285 28293268 NA NA 0 0 NA NA 10.1007/s00122-004-1762-1 15551041 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000280 t3641 MTcCIR1-Y16883 1 SSR t3641.G001 V2 chr8 GCAGGGCAGGCTCAGTGAAGCA 271858 271876 TGGGCAACCAGAAAACGAT 271988 271967 NA NA 0 0 NA NA 10.1007/s00122-004-1762-1 15551041 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000281 t3641 MTcCIR60-AJ271958 1 SSR t3641.G001 V2 chr2 CGCTACTAACAAACATCAAA 19251916 19251935 AGAGCAACCATCACTAATCA 19252110 19252091 NA NA 0 0 NA NA 10.1007/s00122-004-1762-1 15551041 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000282 t3641 MTcCIR11-Y16985 1 SSR t3641.G001 V2 chr2 TTTGGTGATTATTAGCAG 40092105 40092122 GATTCGATTTGATGTGAG 40092406 40092389 NA NA 0 0 NA NA 10.1007/s00122-004-1762-1 15551041 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000283 t3641 MTcCIR12-Y16986 1 SSR t3641.G001 V2 chr4 TCTGACCCCAAACCTGTA 24533112 24533129 ATTCCAGTTAAAGCACAT 24533299 24533282 NA NA 0 0 NA NA 10.1007/s00122-004-1762-1 15551041 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000284 t3641 MTcCIR26-Y16998 1 SSR t3641.G001 V2 chr8 GCATTCATCAATACATTC 5601110 5601127 GCACTCAAAGTTCATACTAC 5601413 5601394 NA NA 0 0 NA NA 10.1007/s00122-004-1762-1 15551041 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000285 t3641 MTcCIR37-AJ271942 1 SSR t3641.G001 V2 chr10 CTGGGTGCTGATAGATAA 20881693 20881709 AATACCCTCCACACAAAT 20881998 20881981 NA NA 0 0 NA NA 10.1007/s00122-004-1762-1 15551041 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000286 t3641 MTcCIR6-Y16980 1 SSR t3641.G001 V2 chr6 TTCCCTCTAAACTACCCTAAAT 219714 219735 TAAAGCAAAGCAATCTAACATA 220037 220016 NA NA 0 0 NA NA 10.1007/s00122-004-1762-1 15551041 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000287 t3641 MTcCIR8-Y16982 1 SSR t3641.G001 V2 chr9 CTAGTTTCCCATTTACCA 22521863 22521880 TCCTCAGCATTTTCTTTC 22522167 22522150 NA NA 0 0 NA NA 10.1007/s00122-004-1762-1 15551041 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000288 t3641 mTcCIR6 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_6 TAAAGCAAAGCAATCTAACATA 190871 190892 TTCCCTCTAAACTACCCTAAAT 191101 191080 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000289 t3641 mTcCIR9 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_6 ACATTTATACCCCAACCA 27178820 27178837 ACCATGCTTCCTCCTTCA 27179105 27179088 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000290 t3641 mTcCIR37 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_10 CTGGGTGCTGATAGATAAT 24948098 24948116 AATACCCTCCACACAAAT 24948259 24948242 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000291 t3641 mTcCIR61 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_10 GCAGTCTGAAACAAGATAA 15181745 15181764 TGACTATAATATAAGGCGAA 15181948 15181930 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000292 t3641 mTcCIR77 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_10 GTTCTCCCCCACTCTCT 3557331 3557347 AATAAATAAATAAACAATACG 3557617 3557597 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000293 t3641 mTcCIR81 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_3 ACAATCTGTCCATTATTCTG 35339456 35339475 TGAAACTCCCATACTACTGA 35339668 35339649 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000294 t3641 mTcCIR95 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_4 CATCGTCTTCCTCTCATC 30201525 30201541 CTCCTTCCCTTTCTCTC 30201749 30201732 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000295 t3641 mTcCIR118 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_1 TCTGCCTGAAAATGTCTC 2418520 2418537 TGGGGCACTAACTTTTG 2418686 2418670 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000296 t3641 mTcCIR131 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_3 GATCATCGGTAAAGTAAAAT 34395072 34395092 TGAGTAAGAAAAAGTAGAAAA 34395276 34395258 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000297 t3641 mTcCIR136 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_6 GAGGAGGTGAGAGCCA 648217 648236 GGTTTGTATTTTTGATTGAG 648448 648433 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000298 t3641 mTcCIR152 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_2 CAGTAGTCAAAACATCAAA 8480885 8480904 GTAATCCAAATAATAAGCAT 8481168 8481150 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000299 t3641 mTcCIR168 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_4 GGTAGTATTGAGGTGCGTAT 213568 213587 GTGAATGAATGGATGTGAAA 213742 213723 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000300 t3641 mTcCIR176 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_2 TCACCAATTCTCTGCTC 9407565 9407583 AATGAAATTACCTCCTTAC 9407668 9407652 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000301 t3641 mTcCIR183 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_4 GTTATCTTAGTTTCTAGCCAC 21398918 21398938 GTAGTCTTACACCTTGATTG 21399270 21399251 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000302 t3641 mTcCIR184 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_1 GGTTTTCTAGCTCCTCC 869393 869409 AGGAAAGAATGACTCATACTA 869535 869515 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000303 t3641 mTcCIR200 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_8 CTTAAAATAAGCCCAAATAC 4592402 4592416 GCCAATTTCTGACCCA 4592638 4592619 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000304 t3641 mTcCIR202 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_3 CCTGAGTCAAAGTGTCCT 34604868 34604885 TCTCTCATAGCTCAAGCA 34605039 34605022 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000305 t3641 mTcCIR208 1 SSR t3641.G002 Tcacao_523_v2.0 NA GCAAGCCCCTAAAACT 0 0 AAAAAGCAAAAGAAGAAGA 0 0 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000306 t3641 mTcCIR213 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_4 GATCTCGCAAAACTAACA 21171763 21171782 TAAGTAAAATGAAGGTGTGA 21172023 21172006 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000307 t3641 mTcCIR225 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_8 AAGACAAAGGGAAGAAGA 2433706 2433723 AGGGGAAGAGCAAATC 2434007 2433992 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000308 t3641 mTcCIR237 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_4 GAAGACAAGGATGGAGACT 31211403 31211419 GCAAAGAGAGCAGGAGA 31211505 31211487 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000309 t3641 mTcCIR240 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_2 AGTGATTTATGGGACTTT 2251351 2251370 CATACCTACTACTGCTCTCT 2251508 2251491 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000310 t3641 mTcCIR241 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_4 ACGAGTGAGAGAGTGAAGTT 33009928 33009947 CAGTTGGAGGGCATTT 33010073 33010058 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000311 t3641 mTcCIR252 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_2 AATGTGTGCTTTGTTTCTA 733183 733201 TTCAAGGGCGTAACTC 733337 733322 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000312 t3641 mTcCIR255 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_6 TTTACCTCCACCATCTT 24818028 24818047 TGGCACTTATCTATTACTGT 24818240 24818224 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000313 t3641 mTcCIR268 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_2 CAGTGAAGAGGCAAGAGA 8480884 8480904 TGTAATCCAAATAATAAGCAT 8481195 8481178 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000314 t3641 mTcCIR273 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_1 ACGGCATTAGAGAGAGA 32964267 32964283 AGAATGATCGCAGAGAG 32964433 32964417 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000315 t3641 mTcCIR275 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_1 GGTTTGGTTTTGGTAAGAC 37655694 37655712 TAAGAGAGAGTGATGCTGACA 37655839 37655819 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000316 t3641 mTcCIR276 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_6 GTCCTATCTGCCTCACT 22699222 22699239 TCCTGCTTTTTAATACAT 22699347 22699331 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000317 t3641 mTcCIR282 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_8 AGCAAAGGCAATAATAATG 1059135 1059153 TGGTGAGGGGAGAGAA 1059307 1059292 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000318 t3641 mTcCIR291 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_6 AGTCCCATAGGTTCCAAT 27518750 27518767 CGAGGTTATCCCCAAA 27518967 27518952 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000319 t3641 mTcCIR337 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_6 ACGAAGCCGTAACTTGG 27034239 27034257 TGCAGGACTCTCTGTCACT 27034449 27034433 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000320 t3641 mTcCIR343 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_4 GCTTTGCCCTTTCTTCTCT 33211336 33211354 AGCACTGAACCGAGCAA 33211603 33211587 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000321 t3641 mTcCIR410 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_3 TTTTGCCTCCCTTGTTCT 34196603 34196620 TGAATCGTTGAGCGAAAG 34196857 34196840 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000322 t3641 mTcCIR422 1 SSR t3641.G002 Tcacao_523_v2.0 Chromosome_1 ACATCCTTTTCTCTGCCTTT 35836900 35836919 CCCTTCCCATCCCTCT 35837107 35837092 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0 t3641.P0000323 t3641 mTcCIR444 1 SSR t3641.G002 Tcacao_523_v2.0 NA TGAACCGGATTGTTGGA 0 0 GGGACTTAATCTGGACATGC 0 0 NA NA 0 0 NA NA NA 10.3390/pathogens10080961 34451425 1 Tcacao_523_v2.0