marker_id species_id marker_name sub_number marker_type mapped_genome_id reference_seq_name chr fwd_primer_seq fwd_primer_start_pos fwd_primer_end_pos rev_primer_seq rev_primer_start_pos rev_primer_end_pos target_seq target_chr target_start_pos target_end_pos allele enzyme comments doi pubmed f_active assembly_version t3641.M000001.1 t3641 TcWRKY-13 1 Others t3641.G001 V2 chr5 CGCACATTGCACTTAAGACTCGT 2405141 2405163 AGCTGATAGGACCTCCTTTAGGC 2405465 2405443 NA 847: T, 930: A, 962: C [AY331174 (allele 1)]; 847: T, 930: C, 962: T [AY331175 (allele 2)]; 847: deletion, 930: C, 962: T [AY331176 (allele 3, reference sequence)] NA 10.1007/s00122-004-1662-4 15148571 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000002.1 t3641 TcWRKY-2 1 Others t3641.G001 V2 chr7 CGAGCTTACTACCGTTGCACCAT 1706627 1706649 CTGCACACCTTTGCACCTGTTG 1706795 1706774 NA 123: T, 124: T, 125: T, 135: G [AY331153 (allele 1)]; 123: T, 124: T, 125: T, 135: A [AY331154 (allele 2)]; 123: T, 124: T, 125: deletion, 135: A [AY331155 (allele 3, reference sequence)]; 123: C, 124: G, 125: deletion, 135: A [AY331156 (allele 4)] NA 10.1007/s00122-004-1662-4 15148571 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000003.1 t3641 TcWRKY-3 1 Others t3641.G001 V2 chr2 TCCTTACCCAAGGTAATGCCCCTG 39818302 39818325 TGCTTACGGACGTTGCATCCT 39818950 39818930 NA 41: G, 159: T, 215: A, 406: T 463: G, 558: G [AY331157 (allele 1, reference sequence)]; 41: T, 159: A, 215: G, 406: C, 463: C, 558: A [AY331158 (allele 2)] NA 10.1007/s00122-004-1662-4 15148571 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000004.1 t3641 TcWRKY-4 1 Others t3641.G001 V2 chr9 CCTGTAAGCACCAGCAGT 38253591 38253608 CCAAGGTAAATTTCAGCTTCATCG 38254021 38253998 NA 234: G, 277: C, 416: T [AY331159 (allele 1, reference sequence)]; 234: A, 277: G, 416: C [AY331160 (allele 2)] NA 10.1007/s00122-004-1662-4 15148571 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000006.1 t3641 TcWRKY-8 1 Others t3641.G001 V2 chr9 CGCTGAACCTAGAGCCAGATGA 823374 823395 GGATGCCCTGTCAAAAAGAAGGTACTG 823657 823631 NA 119: C, 131: C, 204: C [AY331165 (allele 1, reference sequence)]; 119: T, 131: C, 204: T [AY331166 (allele 2)]; 119: C, 131: T, 204: T [Allele 3] NA 10.1007/s00122-004-1662-4 15148571 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000007.1 t3641 TcWRKY-11 1 Others t3641.G001 V2 chr5 CTCTCTTTCTTGCTCCATCAC 30617586 30617606 CTTTCCACATGCTTTCTCACAG 30617855 30617834 NA 460: T [AY331171 (allele 1, reference sequence)]; 460: C [AY331172 (allele 2)] NA 10.1007/s00122-004-1662-4 15148571 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000008.1 t3641 TcWRKY-10 1 Others t3641.G001 V2 chr5 CCCTTCACCTAATTGTTCAGGA 251724 251745 CCCTCAAATCATGGGATGCT 251883 251864 NA 695:A, 700:A [AY331168 (allele 1, reference sequence)]; 695:G, 700:A [AY331169 (allele 2)]; 695:G, 700:C [AY331170 (allele 3)] NA 10.1007/s00122-004-1662-4 15148571 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000009.1 t3641 TcWRKY-14 1 Others t3641.G001 V2 chr1 GGTGGTGATGAGGATTGTTCGGT 11353909 11353930 GCCCAGTTAGAAAACAGGTACTCCCA 11354341 11354316 NA NA NA 10.1007/s00122-004-1662-4 15148571 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000038.1 t3641 CA795514 1 Others t3641.G001 V2 chr8 TGCCGTTGATTACTTGCC 6177038 6177055 GTCCGATCATAGCCTCAT 6177304 6177287 NA NA NA 10.1002/elps.200700937 18958880 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000057.1 t3641 CA797355 1 Others t3641.G001 V2 chr10 ACTTCTCTCACTGTCACCC 398008 398026 AAATTGCCAGGACGAGAC 398191 398174 NA NA NA 10.1002/elps.200700937 18958880 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000065.1 t3641 TIR1 1 Others t3641.G001 V2 chr6 GATCTTAGTGATTCCATCATCTA 2410951 2410973 GTTAGAGAGACTACTCAAGAAA 2411070 2411049 NA NA NA 10.1002/elps.200700937 18958880 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000069.1 t3641 TIR2 1 Others t3641.G001 V2 chr3 GGATCACTCAGTAAACATTGT 3130552 3130572 GGAATCACGAAGATCAAAGAAGT 3130718 3130696 NA C [NA] NA 10.1002/elps.200700937 18958880 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000073.1 t3641 WRKY2 1 Others t3641.G001 V2 chr7 CGAGCTTACTACCGTTGCACCAT 1706627 1706649 CTGCACACCTTTGCACCTGTTG 1706795 1706774 NA C [NA]; G [NA] NA 10.1002/elps.200700937 18958880 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000091.1 t3641 WRKY8_5' 1 Others t3641.G001 V2 chr9 GGAACCCTTTTACTGTTGCT 823511 823530 GGATGCCCTGTCAAAAAGAAGGTACTG 823657 823631 NA 262bp (CTTA) [NA]; C [NA] NA 10.1002/elps.200700937 18958880 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000150.1 t3641 CA797491 1 Others t3641.G001 V2 chr7 GCAGGCTATTCCCTTCTTTC 9794536 9794555 CTGGCAAATGTCCCACAA 9794834 9794817 NA NA NA 10.1002/elps.200700937 18958880 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000151.1 t3641 CA797698 1 Others t3641.G001 V2 chr9 TGCATTGCTTCTCCTCTT 38184028 38184045 CAGCCTGCTATTTATGTC 38184484 38184467 NA NA NA 10.1002/elps.200700937 18958880 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000152.1 t3641 CA797820 1 Others t3641.G001 V2 chr3 TCTTGACACGTTCCATGA 33521041 33521058 GAGAAAAAAGAGGAAGGG 33521215 33521198 NA NA NA 10.1002/elps.200700937 18958880 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000153.1 t3641 CA798090 1 Others t3641.G001 V2 chr2 GGGGAAACGAAGCTGTAGGAAA 15690358 15690379 GCTGCTCATCATAAATGAAGG 15690529 15690509 NA NA NA 10.1002/elps.200700937 18958880 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000155.1 t3641 CF972913 1 Others t3641.G001 V2 chr5 TACCAGATTGCTTTGGCCATC 34377802 34377822 AATGGTGATGACATCAGCATCC 34378177 34378156 NA NA NA 10.1002/elps.200700937 18958880 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000157.1 t3641 TIR7 1 Others t3641.G001 V2 chr5 CTTGCTAGTTATGATGATTTTACTTCCTAAAC 31624738 31624769 TTTTCTTGCTGATGTTAGAGAGATTATTGC 31624998 31624970 NA NA NA 10.1002/elps.200700937 18958880 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000158.1 t3641 TIR8 1 Others t3641.G001 V2 chr6 CATTAAGATCAAAGAATTTATACGCCATAGAAA 14138521 14138553 TACCAATTAAAAAGTGGAAGGGATTCATC 14138795 14138767 NA C [NA] NA 10.1002/elps.200700937 18958880 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000159.1 t3641 WRKY4 1 Others t3641.G001 V2 chr9 CCAAAAGGCAGACAGAGAC 38253783 38253801 CAAGGTAAATTTCAGCTTCATCG 38254020 38253998 NA NA NA 10.1002/elps.200700937 18958880 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000160.1 t3641 WRKY7 1 Others t3641.G001 V2 chr7 TCCAAATCCAAGGTTTTTGCC 94961 94981 CTCCTGCATTAAAGCAGTAGC 95106 95086 NA G [NA]; T [NA] NA 10.1002/elps.200700937 18958880 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000161.1 t3641 WRKY11 1 Others t3641.G001 V2 chr5 CTCTCTTTCTTGCTCCATCAC 30617586 30617606 CTTTCCACATGCTTTCTCACAG 30617855 30617834 NA C [NA] NA 10.1002/elps.200700937 18958880 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000162.1 t3641 WRKY17 1 Others t3641.G001 V2 chr1 GAGATGATTACACTGTTACACC 12935451 12935472 GCTGAGAGTCAACTTAAATCC 12935637 12935617 NA NA NA 10.1002/elps.200700937 18958880 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000170.1 t3641 w17s189 1 Others t3641.G001 V2 chr1 TGATTACACTGTTACACCAACTTTAGACG 12935455 12935483 ACGTGTAAAGAAAGGAGGAAAACTTT 12935595 12935570 NA NA NA 10.1007/s11032-010-9416-2 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000171.1 t3641 w3s558 1 Others t3641.G001 V2 chr2 GTTGTTGTTCTGTTCAATTCGTATGA 39818758 39818783 ATCAGGAATGCTCCAAAATAATCAA 39818884 39818860 NA NA NA 10.1007/s11032-010-9416-2 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000172.1 t3641 w3s463 1 Others t3641.G001 V2 chr2 TTCAACCTTAGACAATGGAGACATTTC 39818692 39818718 TCCAAAATAATCAATAGATCACATAAAAG 39818873 39818845 NA NA NA 10.1007/s11032-010-9416-2 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000173.1 t3641 Tir8s339 1 Others t3641.G001 V2 chr6 AGAATTTATACGCCATAGAAATGTGCT 14138533 14138559 CAAATACCTTGCATAAGTCTCCATAACT 14138746 14138719 NA NA NA 10.1007/s11032-010-9416-2 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000174.1 t3641 c4s123 1 Others t3641.G001 V2 chr10 TGCATTTGCATACTCATCATCAAT 347572 347595 GGTTTTTTTTGGTTATGTTCTGAGTCT 347718 347692 NA A [NA] NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000175.1 t3641 e4785s737 1 Others t3641.G001 V2 chr9 TGGAAATGCAGCCTCTGGA 38184217 38184235 ATGCCAATTATTGAACCAGTATCG 38184325 38184302 NA NA NA 10.1007/s11032-010-9416-2 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000176.1 t3641 c5s639 1 Others t3641.G001 V2 chr8 TGATGAGGCAGATGCTATGACAA 6730968 6730990 TCTTTGTGTATTTCTCGATAACTGCA 6731123 6731098 NA A [NA] NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000177.1 t3641 c4s536 1 Others t3641.G001 V2 chr10 CAATTTGATGCCGAATGAATCAT 347151 347173 TGATGCATGTGAGCTCTCCTAAA 347285 347263 NA G [NA] NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000178.1 t3641 Cir37s112 1 Others t3641.G001 V2 chr10 AAAGTGCGTGTGAAGAGTTCCTATC 20881269 20881293 GCATGGAACGATCCAAGTTAGTC 20881371 20881349 NA G [NA] NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000179.1 t3641 w11s867 1 Others t3641.G001 V2 chr5 AACTTGTCAGCTGTCTCTCTTTCTTG 30617572 30617597 CAGAACTGTGCATGCTTGAAGC 30617691 30617670 NA NA NA 10.1007/s11032-010-9416-2 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000180.1 t3641 Cir160s384 1 Others t3641.G001 V2 chr9 ATGATGGTGACAACAGCAAGAAA 10076240 10076262 ATGCCTATTAATCACCTAGGTGAGACT 10076370 10076344 NA A [NA] NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000181.1 t3641 w7s104 1 Others t3641.G001 V2 chr7 CCAAGGTTTTTGCCTTAAATCAA 94968 94990 GCATTAAAGCAGTAGCAAATGATGTT 95101 95076 NA NA NA 10.1007/s11032-010-9416-2 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000182.1 t3641 w8s119 1 Others t3641.G001 V2 chr9 TTACTGTTGCTTTCCATTTTCTAAGTG 823520 823546 GCCCTGTCAAAAAGAAGGTACTG 823653 823631 NA NA NA 10.1007/s11032-010-9416-2 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000183.1 t3641 Cir211s1036 1 Others t3641.G001 V2 chr8 CCAAACAAAATCTTAATGCACTGTG 2662932 2662956 ACCTTAATTTTATGGGAAACGAGGT 2663009 2662985 NA T [NA] NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000184.1 t3641 w8s131 1 Others t3641.G001 V2 chr9 TTACTGTTGCTTTCCATTTTCTAAGTG 823520 823546 GCCCTGTCAAAAAGAAGGTACTG 823653 823631 NA NA NA 10.1007/s11032-010-9416-2 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000185.1 t3641 Cir222s384 1 Others t3641.G001 V2 chr4 AGCAGTGCCTTCAACATACTCTGT 1056012 1056035 CCAGTTGGCTCAAAAGTTTGG 1056127 1056107 NA NA NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000186.1 t3641 Cir222s296 1 Others t3641.G001 V2 chr4 AGCAGTGCCTTCAACATACTCTGT 1056012 1056035 CCAGTTGGCTCAAAAGTTTGG 1056127 1056107 NA T [NA] NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000187.1 t3641 w8s204 1 Others t3641.G001 V2 chr9 ACCTAGAGCCAGATGATGAATTGTATT 823380 823406 CACTTAGAAAATGGAAAGCAACAGT 823546 823522 NA NA NA 10.1007/s11032-010-9416-2 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000188.1 t3641 w8s288 1 Others t3641.G001 V2 chr9 ACCTAGAGCCAGATGATGAATTGTATT 823380 823406 CTTGTACTTGATGAGATTTTGATTGTCA 823505 823478 NA NA NA 10.1007/s11032-010-9416-2 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000189.1 t3641 w17s189 1 Others t3641.G001 V2 chr1 TGATTACACTGTTACACCAACTTTAGACG 12935455 12935483 ACGTGTAAAGAAAGGAGGAAAACTTT 12935595 12935570 NA C [NA] NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000190.1 t3641 w3s41 1 Others t3641.G001 V2 chr2 AAAGGCAATCCTTACCCAAGGT 39818294 39818315 AAGAATGAACCACTTTGCAGTAGATAGT 39818372 39818345 NA NA NA 10.1007/s11032-010-9416-2 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000191.1 t3641 w3s41 1 Others t3641.G001 V2 chr2 AAAGGCAATCCTTACCCAAGGT 39818294 39818315 AAGAATGAACCACTTTGCAGTAGATAGT 39818372 39818345 NA G [NA] NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000192.1 t3641 w8s119 1 Others t3641.G001 V2 chr9 TTACTGTTGCTTTCCATTTTCTAAGTG 823520 823546 GCCCTGTCAAAAAGAAGGTACTG 823653 823631 NA C [NA] NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000193.1 t3641 w3s463 1 Others t3641.G001 V2 chr2 TTCAACCTTAGACAATGGAGACATTTC 39818692 39818718 TCCAAAATAATCAATAGATCACATAAAAG 39818873 39818845 NA C [NA] NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000194.1 t3641 w3s558 1 Others t3641.G001 V2 chr2 GTTGTTGTTCTGTTCAATTCGTATGA 39818758 39818783 ATCAGGAATGCTCCAAAATAATCAA 39818884 39818860 NA A [NA] NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000195.1 t3641 e0050s274 1 Others t3641.G001 V2 chr3 CCGAGATCCCATGGTTAACAA 33521065 33521085 CTCAGGTTCCAACCATTGATTTAA 33521196 33521173 NA C [NA] NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000196.1 t3641 e0050s274 1 Others t3641.G001 V2 chr3 CCGAGATCCCATGGTTAACAA 33521065 33521085 CTCAGGTTCCAACCATTGATTTAA 33521196 33521173 NA NA NA 10.1007/s11032-010-9416-2 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000197.1 t3641 e4785s737 1 Others t3641.G001 V2 chr9 TGGAAATGCAGCCTCTGGA 38184217 38184235 ATGCCAATTATTGAACCAGTATCG 38184325 38184302 NA C [NA] NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000198.1 t3641 w7s104 1 Others t3641.G001 V2 chr7 CCAAGGTTTTTGCCTTAAATCAA 94968 94990 GCATTAAAGCAGTAGCAAATGATGTT 95101 95076 NA A [NA] NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000199.1 t3641 w8s288 1 Others t3641.G001 V2 chr9 ACCTAGAGCCAGATGATGAATTGTATT 823380 823406 CTTGTACTTGATGAGATTTTGATTGTCA 823505 823478 NA G [NA] NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.M000200.1 t3641 w8s131 1 Others t3641.G001 V2 chr9 TTACTGTTGCTTTCCATTTTCTAAGTG 823520 823546 GCCCTGTCAAAAAGAAGGTACTG 823653 823631 NA C [NA] NA 10.1007/s11032-011-9596-4 NA 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000015 t3641 mSI_440 1 Others t3641.G001 V2 chr1 GTCACTCCCATTTTCAAGTCTATTC 4056096 4056116 AACGAGGAATGATGGCAAGGT 4056407 4056383 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000023 t3641 mSI_462 1 Others t3641.G001 V2 chr4 TTTAGGGTTTTTTAAAGGATGT 1367 1388 ATGCTTAAAAGTTTATGAATAAAACC 1564 1539 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000024 t3641 mSI_466 1 Others t3641.G001 V2 chr4 AAGGGCATTCTAAGCATTTTG 4713 4733 AATCCAAAAACTCCATAAAAACCA 4939 4916 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000025 t3641 mSI_474 1 Others t3641.G001 V2 chr4 AGGATGTTTAAGGTCATTCTAAGC 9978 10001 GGAGCTTCCAGTTTGTTTTCAC 10327 10306 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000032 t3641 mSI_542 1 Others t3641.G001 V2 chr4 CTTTCAGGAGAATCCAAGCCA 62686 62706 TCAGCTCGCCTCATTTTGTT 62890 62871 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000040 t3641 mSI_408 1 Others t3641.G001 V2 chr4 TGCAGAGGCCATGCGAGTAT 234674 234693 TGCACTTGAAAGAGGGGGAA 234917 234898 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000041 t3641 mSI_402 1 Others t3641.G001 V2 chr4 GCACATTCCCTTGCTGCT 244035 244052 CGTCATCTCCAACTACGCCA 244174 244155 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000042 t3641 mSI_535 1 Others t3641.G001 V2 chr4 AGTTGACTATCTTGCAAACCAATAC 250347 250371 GTTCGGCTAAGCAATGCACG 250659 250640 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000043 t3641 mSI_411 1 Others t3641.G001 V2 chr4 CGCCAGGCATTCTTACTCTT 256190 256209 ATACTGGACATCTTGTTGAATGAC 256463 256440 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000044 t3641 mS_413 1 Others t3641.G001 V2 chr4 TAAATGGTTGGGCTTTGGGGT 268478 268498 ACGCTTACCCTATTTTCACGATTCT 268594 268570 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000050 t3641 Tc04_g000050 1 Others t3641.G001 V2 chr4 GTTTCAATGATGTGAGATCATTATCTC 52632 52658 GGTTCAGATATGCAAGGGTTG 52874 52854 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000051 t3641 Tc08_g003640 1 Others t3641.G001 V2 chr8 ATTCCCCCGTCTTCACTTCT 1966702 1966722 TCTGCTCATCAACCTCTTTGG 1966913 1966894 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000052 t3641 Tc01_g007220 1 Others t3641.G001 V2 chr1 CCAACAATGAGGGAAGTGGT 4017690 4017710 GCTGGTCTTTCTGGTCCTTTG 4017840 4017821 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000053 t3641 Tc01_g007270 1 Others t3641.G001 V2 NA GAGGGTCATAGTGACGCTGTT 0 0 CATGATCTCAAAGGGGTGCT 0 0 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000054 t3641 Tc01_g007290 1 Others t3641.G001 V2 chr1 AGCCATTGCTTGATGGAAAT 4067117 4067136 TCACGTATCCCCGTCCTTTA 4067403 4067384 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000055 t3641 Tc04_g000160 1 Others t3641.G001 V2 chr4 GACTGGATCGGCTCTTTCAG 132842 132861 TTCTGGAACCGCTGGTAATC 133107 133088 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000056 t3641 Tc04_g000190 1 Others t3641.G001 V2 chr4 TTGTTGGCAGGACTATGTGC 149291 149310 CAACGCTTTGTTGCTTTGAA 149611 149592 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000057 t3641 Tc04_g000230 1 Others t3641.G001 V2 chr4 GGTTCTTCGCTTGACAACAA 185187 185207 TTGTGTTGGAAAAGGTTGTGA 185608 185589 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000058 t3641 Tc04_g000240 1 Others t3641.G001 V2 chr4 TTCTGGAGGATCCCCTTTTT 192534 192553 ATGCACTTGCACCAAAGTCA 192847 192828 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000059 t3641 Tc04_g000260 1 Others t3641.G001 V2 chr4 TGTGGATTGGTCTTCTTGGA 206256 206275 TCTGGCATCAATTTGCCATT 206555 206536 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000060 t3641 Tc04_g000320 1 Others t3641.G001 V2 NA CGGGGATCCTAAATTCCG 0 0 CCGATTTCAGGCATTCGT 0 0 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000061 t3641 Tc04_g000330 1 Others t3641.G001 V2 chr4 GAGCTGGTGAAGGTGGAGAG 249491 249510 CACATGACCCGTTCTTTCCT 249674 249655 NA NA 0 0 NA NA 10.1093/jxb/erx293 29048566 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000082 t3641 Actin_F_LSP 1 Others t3641.G001 V2 NA CTGACAGAATGAGCAAGGAAATCA 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000083 t3641 Actin_R_LSP 1 Others t3641.G001 V2 NA TACTCTGCCTTAGCAATCCACATC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000084 t3641 Actin_P 1 Others t3641.G001 V2 NA CCATCTTGGCATCTC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000085 t3641 Actin_F_STA 1 Others t3641.G001 V2 NA ACCATGTTCCCAGGAATTGCT 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000086 t3641 Actin_R_STA 1 Others t3641.G001 V2 NA TGAACGATTGATGGGCCAG 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000087 t3641 MDH_F_LSP 1 Others t3641.G001 V2 NA CCAGTTCGCGTCCTCGTTAC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000088 t3641 MDH_R_LSP 1 Others t3641.G001 V2 NA CATGGGCACCAGAGCATACC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000089 t3641 MDH_P 1 Others t3641.G001 V2 NA AGCTGCAGGACAAAT 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000090 t3641 MDH_F_STA 1 Others t3641.G001 V2 NA TCCGTCAATGGCAAAGGAA 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000091 t3641 MDH_R_STA 1 Others t3641.G001 V2 NA AGGATCACAGGCTGGTCAGC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000092 t3641 EF1a_t1_F_LSP 1 Others t3641.G001 V2 NA TGATAAAGCTTGGGAAATTCAAGTT 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000093 t3641 EF1a_t1_R_LSP 1 Others t3641.G001 V2 NA CCAATGACCACAATGTTAATGTGAA 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000094 t3641 EF1a_t1_P 1 Others t3641.G001 V2 NA AGTCGCTATGGGTAAGGA 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000095 t3641 EF1a_t1_F_STA 1 Others t3641.G001 V2 NA CTCGCCTGCCGATTGATAAA 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000096 t3641 EF1a_t1_R_STA 1 Others t3641.G001 V2 NA CAGGTGACCGGTGGTGGT 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000097 t3641 016564_Fw 1 Others t3641.G001 V2 NA TTATATTGGCTGTGTAAGAAGGCTTTT 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000098 t3641 016564_Rv 1 Others t3641.G001 V2 NA CAGAACATCGAGTTATTAGGATCAGAA 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000099 t3641 016564_probe 1 Others t3641.G001 V2 NA TGTTCCATGGCTTAACCT 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000100 t3641 016564_STA_F 1 Others t3641.G001 V2 NA TTATATTGGCTGTGTAAGAAGGCTTTT 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000101 t3641 016564_STA_R 1 Others t3641.G001 V2 NA CAGAACATCGAGTTATTAGGATCAGAA 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000102 t3641 028959_Fw 1 Others t3641.G001 V2 NA GCAGTTACAATGATTCGCCAAG 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000103 t3641 028959_Rv 1 Others t3641.G001 V2 NA AGATTTGATATGTAAGGAGCTATGTTTCC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000104 t3641 028959_probe 1 Others t3641.G001 V2 NA ATCTCCATGAATTTATCC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000105 t3641 028959_STA_F 1 Others t3641.G001 V2 NA ACTTGTGGAACGGTCTTAACTGC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000106 t3641 028959_STA_R 1 Others t3641.G001 V2 NA ATTGTTTGACAAATCCAGGAATTG 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000107 t3641 028960_Fw 1 Others t3641.G001 V2 NA TGAAGGTGGACTCATTTATGAATACAT 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000108 t3641 028960_Rv 1 Others t3641.G001 V2 NA CTCCCAATTCAAGAAATGTTTGC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000109 t3641 028960_probe 1 Others t3641.G001 V2 NA AGGAACTTCTGTTAGATAGC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000110 t3641 028960_STA_F 1 Others t3641.G001 V2 NA GCAATGAAGGTGGACTCATTTATG 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000111 t3641 028960_STA_R 1 Others t3641.G001 V2 NA GCTGCATCCAATGCTACTCGTAG 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000112 t3641 028968_Fw 1 Others t3641.G001 V2 NA GGCCATTGAACTTCTTTTCTGG 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000113 t3641 028968_Rv 1 Others t3641.G001 V2 NA CACAGTTTCAGTATCTTCTTCCCGT 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000114 t3641 028968_probe 1 Others t3641.G001 V2 NA CATTCCATGTTTCAACTAT 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000115 t3641 028968_STA_F 1 Others t3641.G001 V2 NA GAGTTGACGGTGTTTATGTGCAA 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000116 t3641 028968_STA_R 1 Others t3641.G001 V2 NA TGCTTTGGCATCACAGTTTCAG 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000117 t3641 32344_FW 1 Others t3641.G001 V2 NA TGCCGGACAAATTGATCGTA 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000118 t3641 32344_RV 1 Others t3641.G001 V2 NA GAGCACACCCTTCACAAGAATTG 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000119 t3641 32344_probe 1 Others t3641.G001 V2 NA AGCTGGAAGGATGTGAAA 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000120 t3641 32344_STA_F 1 Others t3641.G001 V2 NA GCTGATGACTCAGGACTTGCTTC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000121 t3641 32344_STA_R 1 Others t3641.G001 V2 NA CTTGTGTCTTCAGCAGTGAGCAC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000122 t3641 038249_t3_F_LSP 1 Others t3641.G001 V2 NA GGCACTACTGTTCTCACTGCAATC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000123 t3641 038249_t3_R_LSP 1 Others t3641.G001 V2 NA CTCTATAGCTGTTCCATGCCGTG 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000124 t3641 038249_t3_P 1 Others t3641.G001 V2 NA ATTTGGGAGGGCAGTACT 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000125 t3641 038249_t3_F_STA 1 Others t3641.G001 V2 NA CCTTGAGTCTGCCTTGGCTTC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000126 t3641 038249_t3_R_STA 1 Others t3641.G001 V2 NA AACAGGGCCTATGATCTTTGGA 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000127 t3641 038259_t1_F_LSP 1 Others t3641.G001 V2 NA GAGACTTAACCACCGACCCAAA 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000128 t3641 038259_t1_R_LSP 1 Others t3641.G001 V2 NA TTCAGCTGGATAATCTTCCATCTCA 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000129 t3641 038259_t1_P 1 Others t3641.G001 V2 NA CTTCATCTGCGGTGGC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000130 t3641 038259_t1_F_STA 1 Others t3641.G001 V2 NA GGTTCGAGTAGCAGTCGACTGG 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000131 t3641 038259_t1_R_STA 1 Others t3641.G001 V2 NA GCAGATCGAAGTAGATTCCTCCAG 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000132 t3641 038261_t1_F_LSP 1 Others t3641.G001 V2 NA CCAGACACAAAACAGATTAAGAAGAAGTT 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000133 t3641 038261_t1_R_LSP 1 Others t3641.G001 V2 NA CCATTTGAATTCGTGATAGCTCCT 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000134 t3641 038261_t1_P 1 Others t3641.G001 V2 NA TTCATTGACAAGGTTTTAGG 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000135 t3641 038261_t1_F_STA 1 Others t3641.G001 V2 NA GTCATGCCAGCTTGTTACCACTC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000136 t3641 038261_t1_R_STA 1 Others t3641.G001 V2 NA TCCATATCGATCACACCATGACTT 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000137 t3641 38262_F_LSP 1 Others t3641.G001 V2 NA AATTGGCTGGACAAGGAGGTC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000138 t3641 38262_R_LSP 1 Others t3641.G001 V2 NA CCTGATTTAATATGCTCCTTTGCTGT 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000139 t3641 38262_P 1 Others t3641.G001 V2 NA CAACCATGAAACTCA 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000140 t3641 38262_F_STA 1 Others t3641.G001 V2 NA TCTGATTCACCAAGCACGGTAC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000141 t3641 38262_R_STA 1 Others t3641.G001 V2 NA GCTACCTCTCCCAGCTTCTCATC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000142 t3641 038267_t1-3_F_LSP 1 Others t3641.G001 V2 NA GTCAATCTTCGAGATCCTCATCG 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000143 t3641 038267_t1-3_R_LSP 1 Others t3641.G001 V2 NA GATCAGAGTTTGACATTTCACCTTAGATAG 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000144 t3641 038267_t1-3_P 1 Others t3641.G001 V2 NA CAATATGCAAGGTTGGTGAT 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000145 t3641 038267_t1-3_F_STA 1 Others t3641.G001 V2 NA CTTTGGGATGGAGTACTTGCATG 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000146 t3641 038267_t1-3_R_STA 1 Others t3641.G001 V2 NA ACCAAATGAGAACACATCAACCTTC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000147 t3641 NPR1_t1_FW 1 Others t3641.G001 V2 NA GACCGTTTGTGCGTTGAGATAC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000148 t3641 NPR1_t1_RV 1 Others t3641.G001 V2 NA TAGCAATGTCCATCGCAACTTT 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000149 t3641 NPR1_t1_probe 1 Others t3641.G001 V2 NA AATAGAGTTGGATTGGCAAA 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000150 t3641 NPR1_t1_STA_F 1 Others t3641.G001 V2 NA AAGGCTTCTCCAAAGGACCG 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0 t3641.P0000151 t3641 NPR1_t1_STA_R 1 Others t3641.G001 V2 NA TGTTCCATCCACTTTAGCAATGTC 0 0 NA 0 0 NA NA 0 0 NA NA 10.1186/s12864-016-2415-x 26865216 1 Theobroma_cacao_criollo_chr.v2.0