marker_id species_id marker_name sub_number marker_type mapped_genome_id reference_seq_name chr fwd_primer_seq fwd_primer_start_pos fwd_primer_end_pos rev_primer_seq rev_primer_start_pos rev_primer_end_pos target_seq target_chr target_start_pos target_end_pos allele enzyme comments doi pubmed f_active assembly_version t29760.M000056.1 t29760 F3'H 1 Others t29760.G001 12X 17 ATTCGCCACCCTGAAATGAT 8013559 8013578 AGCCGTTGATCTCACAGCTC 8013754 8013735 NA NA NA F3'H_S: ATTCGCCACCCTGAAATGAT F3'H_AS: AGCCGTTGATCTCACAGCTC 10.1186/1471-2164-7-12 16433923 1 Vitis_vinifera.12X t29760.M000057.1 t29760 F35-1int 1 Others t29760.G001 12X 6 GCTCACTATTACCAACATTAAAGCA 15666117 15666141 GGCAAGTCAGACTCCACGAG 15666717 15666698 NA NA NA Vv3'5'H-1A-intron_S: GCTCACTATTACCAACATTAAAGCA Vv3'5'H-intron_AS: GGCAAGTCAGACTCCACGAG 10.1186/1471-2164-7-12 16433923 1 Vitis_vinifera.12X t29760.M000186.1 t29760 VVC2981A 1 Others t29760.G001 12X 18 TACACAAACACAGACCCAGA 94225 94244 TGGTGGAGGAAATAGAGATG 95048 95029 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000189.1 t29760 VVC2975A 1 Others t29760.G001 12X 18 TCAAACAAACTTGCTGAATG 176588 176607 AGCTTGATAAACCCAGATGA 177242 177223 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000194.1 t29760 VVC2973A 1 Others t29760.G001 12X 18 GCGTGTAGGCAGAAAAGA 227438 227455 AATTTACGAGATGGTGGATG 228092 228073 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000199.1 t29760 VVC2967B 1 Others t29760.G001 12X 18 ATGGATCACATAACGAAAGG 299181 299200 CAGGAAATAAGTCCAGGATG 299684 299665 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000200.1 t29760 VVC2966A 1 Others t29760.G001 12X 18 GGGTTAATCATGTGAAACGAC 307808 307828 TATTATGGACACACCCACCT 308389 308370 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000202.1 t29760 VVC2965A 1 Others t29760.G001 12X 18 GGAGCCTTCGTAAATGGT 314480 314497 GGGTGGATGTGTATCTTCTG 315044 315025 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000205.1 t29760 VVC2963A 1 Others t29760.G001 12X 18 GTAAGGGAGCTTATCGAACC 325602 325621 ACCAGGGTCCTACAATGAGT 326622 326603 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000207.1 t29760 VVC2961A 1 Others t29760.G001 12X 18 TCATTTCAATACCCAACCTC 337504 337523 CATTCCAATCTTCTTGCACT 338449 338430 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000213.1 t29760 VVC2955A 1 Others t29760.G001 12X 18 GGCAAGTGCTTCTAGTTTTC 389365 389384 CCAATGTGTTTTCCTTCTTC 390382 390363 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000216.1 t29760 VVC2951A 1 Others t29760.G001 12X 18 AGCACTTGGCTTCCATCT 412266 412283 ACTGCCTTTCCTCTCTTTCT 413075 413056 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000224.1 t29760 VVC2944A 1 Others t29760.G001 12X 18 ATAGATTGGAACACCAGCAC 475406 475425 CATCAAGCCACTCAACAAC 476107 476089 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000225.1 t29760 VVC2943A 1 Others t29760.G001 12X 18 CTTATTAGTTCTGTTCTTGTTTCC 492294 492317 AACTGCATGGGAGGTCTT 492713 492696 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000232.1 t29760 VVC2935A 1 Others t29760.G001 12X 18 ATCACCGATAAGAACACTGG 525619 525638 GGGTACATAAATCCTTGCTG 526652 526633 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000237.1 t29760 VVC2929A 1 Others t29760.G001 12X 18 CAAGGGGTTGATTTCTCTC 565477 565495 GCACTCACTTCTCCAGCTAC 566318 566299 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000238.1 t29760 VVC2927A 1 Others t29760.G001 12X 18 TGGAGAAAGTGTTGGATGTT 580972 580991 TCATTGCTTCCATCTTCATT 581773 581754 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000244.1 t29760 VVC2918A 1 Others t29760.G001 12X 18 CTGAATACGGAATGGAACAC 621872 621891 GAAAAAGGATGTGGGAATAA 622612 622593 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000247.1 t29760 VVC2914A 1 Others t29760.G001 12X 18 ACTCTCGACTTGACACTGCT 644668 644687 CATTCACAGATGGGATGTT 645532 645514 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000249.1 t29760 VVC2912A 1 Others t29760.G001 12X 18 GGTACTGATTGGACTGCTTC 654536 654555 CTTTGGGGGAACTATTCTTT 655419 655400 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000251.1 t29760 VVS56 1 Others t29760.G001 12X 18 GTGCTTTTAGCACCAAAGAGT 669994 670014 TGGGACAAGATTGTAGCCAAA 670221 670201 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000253.1 t29760 VVC2910A 1 Others t29760.G001 12X 18 CGGTATCTTGGTAGTTTGG 676120 676138 CATAGATGAATTTGGGCAGT 677034 677015 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000257.1 t29760 VVC2895A 1 Others t29760.G001 12X 18 TCATCCAACCATGTCAAAC 781234 781252 GGTCACAAGATCAGTAGCAG 781996 781977 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000269.1 t29760 VVC2899A 1 Others t29760.G001 12X 18 AGCCTCCAACTCAAAAATAG 757940 757959 AAGCGAGAATTAACACCAGA 758922 758903 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000270.1 t29760 VVC2884A 1 Others t29760.G001 12X 18 AACTTTCAGATTTTGGGTTG 861830 861849 CCATGTGGAGGAGTACGA 862602 862585 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.M000281.1 t29760 VVS58 1 Others t29760.G001 12X 18 GGGCTGAACATAAGTGAGCTG 901754 901774 TACGTAGGCGTGCAAATCG 901953 901935 NA NA NA 10.1186/1471-2229-10-284 21176183 1 Vitis_vinifera.12X t29760.P0000001 t29760 VvbZIP61-F1__VvbZIP61-R1 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000154F_004_arrow_pilon_ CCCTTCCATGGGGAACTTGG 92643 92662 CAATGGAGTCGCTGACGGAT 92761 92742 NA NA 0 0 NA NA NA 10.1093/hr/uhad151 37701455 1 Alternative_haplotypes_polished_genome t29760.P0000002 t29760 VvbZIP61-F2__VvbZIP61-R2 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000154F_004_arrow_pilon_ ATGGCGCAACTGCCTCCAAAG 91567 91591 ATGGTTTAGAACATCCTCCTCCTTA 92829 92809 NA NA 0 0 NA NA NA 10.1093/hr/uhad151 37701455 1 Alternative_haplotypes_polished_genome t29760.P0000003 t29760 pSAK277-VvbZIP61-F3__pSAK277-VvbZIP61-R3 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGTACCATGGCGCAACTGCCTCCAAAG 0 0 CTCGAGATGGTTTAGAACATCCTCCTCCTTA 0 0 NA NA 0 0 NA NA NA 10.1093/hr/uhad151 37701455 1 Alternative_haplotypes_polished_genome t29760.P0000004 t29760 Vvactin 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTACCGCGGGCAAGAGATAC 0 0 ATTCACACGCTCCTTTTGGG 0 0 NA NA 0 0 NA NA NA 10.1093/hr/uhad063 37249950 1 Alternative_haplotypes_polished_genome t29760.P0000005 t29760 PR1CDS 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000086F_004_arrow_pilon_ ATGGGGTTGTTTAAGATTTCACTAGTTTTTATTTGTCT 229 250 TCAATAAGGACGCTGTCCGACA 711 674 NA NA 0 0 NA NA NA 10.1093/hr/uhad063 37249950 1 Alternative_haplotypes_polished_genome t29760.P0000006 t29760 PR1promoter 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_5630 CATAAAATAGTGTATTTTTTTTTCCCCATTTTCCTCTTTTTCT 378915 378951 TTTCAGTTGTGAAGTTTAATGTAATTGATGTGGAATG 380914 380872 NA NA 0 0 NA NA NA 10.1093/hr/uhad063 37249950 1 Alternative_haplotypes_polished_genome t29760.P0000007 t29760 pBI121-VvPR1promoter 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GACCATGATTACGCCAAGCTTCATAAGATAGTGTATTTTTTTTTTTTTTCATTTTCC 0 0 GGACTGACCACCCGGGGATCCTTTCAGTTGTGAAGTTTAATGTAATTGATG 0 0 NA NA 0 0 NA NA NA 10.1093/hr/uhad063 37249950 1 Alternative_haplotypes_polished_genome t29760.P0000008 t29760 pBI121-VdPR1promoter 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GACCATGATTACGCCAAGCTTCACAAAATAATGTAATTTTTTTTTTCATTTTCCT 0 0 GGACTGACCACCCGGGGATCCTTTCAGTTGTGAAGTTTAATGTAATTGATG 0 0 NA NA 0 0 NA NA NA 10.1093/hr/uhad063 37249950 1 Alternative_haplotypes_polished_genome t29760.P0000009 t29760 qRTPCR-PR1 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_5630 TGGAACAACACCGTAGCCTC 378666 378685 CCAGGCAATGTTCTCCCCAT 378770 378751 NA NA 0 0 NA NA NA 10.1093/hr/uhad063 37249950 1 Alternative_haplotypes_polished_genome t29760.P0000010 t29760 PR1-no signal peptide 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_5630 GCTCAAAACTCACAGCAGGACT 378432 378453 TCAATAAGGACGCTGTCCGACA 378845 378824 NA NA 0 0 NA NA NA 10.1093/hr/uhad063 37249950 1 Alternative_haplotypes_polished_genome t29760.P0000011 t29760 PBI1302-VdPR1 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ACGGGGGACTCTTGACCATGGATGGGGTTGTTTAAGATTTCACTAGTTTTTATTTGTCT 0 0 AAGTTCTTCTCCTTTACTAGTATAAGGACGCTGTCCGACA 0 0 NA NA 0 0 NA NA NA 10.1093/hr/uhad063 37249950 1 Alternative_haplotypes_polished_genome t29760.P0000012 t29760 EDR2 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ACCTTTGCTATGTGCGTT 0 0 CCTCTTGTTCTGTCTCGG 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2023.1127206 36824203 1 Alternative_haplotypes_polished_genome t29760.P0000013 t29760 ERF039 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000046F_010_arrow_pilon_ AAGGTGATCAAGCGGAGCTA 813528 813547 TATTCCATGGCCTCAGTTCC 813735 813716 NA NA 0 0 NA NA NA 10.3389/fpls.2023.1127206 36824203 1 Alternative_haplotypes_polished_genome t29760.P0000014 t29760 NAC047 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGCATCCATGAGGTTGGATA 0 0 GAGTCCATGGCGTCCAGTAT 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2023.1127206 36824203 1 Alternative_haplotypes_polished_genome t29760.P0000015 t29760 WRKY51 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Pc000252F_arrow_pilon_obj CAGTGAAGAACAGCCCCAAT 17229 17248 CATCAAAGGAACCTGGTCGT 19226 19207 NA NA 0 0 NA NA NA 10.3389/fpls.2023.1127206 36824203 1 Alternative_haplotypes_polished_genome t29760.P0000031 t29760 Vitvi07g00283 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000033F_020_arrow_pilon_ GGTTTTCAAGCCCCAGAAGG 705239 705258 ATTGCTGAGCCTCTCTTCGT 705344 705325 NA NA 0 0 NA NA NA 10.1186/s12864-022-08788-y 35918639 1 Alternative_haplotypes_polished_genome t29760.P0000032 t29760 Vitvi07g02190 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000033F_020_arrow_pilon_ TCTCAGAAGCAAGCCGTTGTGTC 703072 703094 CTAAGTCAGGAGCCAAGCCATTCC 703195 703172 NA NA 0 0 NA NA NA 10.1186/s12864-022-08788-y 35918639 1 Alternative_haplotypes_polished_genome t29760.P0000033 t29760 Vitvi12g00080 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100218 GCAAGTACCTGGCTGGGGAT 543319 543338 ATCCCACCATGCCTTCACGT 543446 543427 NA NA 0 0 NA NA NA 10.1186/s12864-022-08788-y 35918639 1 Alternative_haplotypes_polished_genome t29760.P0000034 t29760 Vitvi07g02189 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CCAGTTCTTCGCGTTGCCTC 0 0 CCAGCCTGGCCTCATACACA 0 0 NA NA 0 0 NA NA NA 10.1186/s12864-022-08788-y 35918639 1 Alternative_haplotypes_polished_genome t29760.P0000035 t29760 Vitvi11g00301 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000003F_014_arrow_pilon_ AGCATCTTGGTGGGTCGGAG 649232 649251 CATAGGCTTTGGCGACTGCG 649323 649304 NA NA 0 0 NA NA NA 10.1186/s12864-022-08788-y 35918639 1 Alternative_haplotypes_polished_genome t29760.P0000036 t29760 Vitvi08g02133 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000013F_026_arrow_pilon_ CTGCTGCTGCTGTTGATGATGATTG 1623112 1623136 CTGAACCACAAAGTGTCCCTCCTTC 1623194 1623170 NA NA 0 0 NA NA NA 10.1186/s12864-022-08788-y 35918639 1 Alternative_haplotypes_polished_genome t29760.P0000037 t29760 Vitvi09g00108 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100311 TGCGCTCTGATGGCTCTCTC 1031295 1031314 TCTCCGCTTGGATCAGTGCC 1031564 1031545 NA NA 0 0 NA NA NA 10.1186/s12864-022-08788-y 35918639 1 Alternative_haplotypes_polished_genome t29760.P0000038 t29760 Vitvi06g00024 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000098F_008_arrow_pilon_ AGAGACCAGCCCTCTCGACT 304845 304864 TCAGCACACAGACCTGGCAA 304939 304920 NA NA 0 0 NA NA NA 10.1186/s12864-022-08788-y 35918639 1 Alternative_haplotypes_polished_genome t29760.P0000039 t29760 Vitvi17g00036 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000115F_003_arrow_pilon_ TGGTGACTGTGCCTCGTGAG 64770 64789 CTGCTGGTCCGACACCTGAT 65270 65251 NA NA 0 0 NA NA NA 10.1186/s12864-022-08788-y 35918639 1 Alternative_haplotypes_polished_genome t29760.P0000040 t29760 Vitvi17g00037 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTGACACCAACCCCTCCTAC 0 0 GCCCTAACTTCAACCCTTGC 0 0 NA NA 0 0 NA NA NA 10.1186/s12864-022-08788-y 35918639 1 Alternative_haplotypes_polished_genome t29760.P0000041 t29760 Vitvi09g00339 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AGAGGGTTGTGCCTGGTTCC 0 0 CACAGCCACACATGTACCGC 0 0 NA NA 0 0 NA NA NA 10.1186/s12864-022-08788-y 35918639 1 Alternative_haplotypes_polished_genome t29760.P0000042 t29760 Vitvi02g00202 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000012F_014_arrow_pilon_ TGTGTTGGGTTACAGATGTGGGAAC 675185 675207 ACAGGTTATGGCAGGAGGTGGAG 675294 675270 NA NA 0 0 NA NA NA 10.1186/s12864-022-08788-y 35918639 1 Alternative_haplotypes_polished_genome t29760.P0000043 t29760 Vitvi17g00238 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGTTTTGCAAGGACGGACAG 0 0 GCATCACGGCTACCTTCAAG 0 0 NA NA 0 0 NA NA NA 10.1186/s12864-022-08788-y 35918639 1 Alternative_haplotypes_polished_genome t29760.P0000044 t29760 Vitvi07g00046 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_1682 TGGAAGAGAATGTTGGGGCT 885426 885445 TTGTCTGGGGCTTGATCAGT 885557 885538 NA NA 0 0 NA NA NA 10.1186/s12864-022-08788-y 35918639 1 Alternative_haplotypes_polished_genome t29760.P0000045 t29760 Vitvi11g00320 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000003F_014_arrow_pilon_ ACACCTGGGAAGGGAACAGAGAAG 821813 821836 AAGAGCATGAGCACAGCAGAAGAC 821953 821930 NA NA 0 0 NA NA NA 10.1186/s12864-022-08788-y 35918639 1 Alternative_haplotypes_polished_genome t29760.P0000046 t29760 Vitvi01g00232 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000027F_012_arrow_pilon_ TGGAGGTGGAGGAGGAAGGT 52835 52854 CGGGTTTGCAGCGAAGTGAG 52949 52930 NA NA 0 0 NA NA NA 10.1186/s12864-022-08788-y 35918639 1 Alternative_haplotypes_polished_genome t29760.P0000047 t29760 Vitvi14g01907 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGCACCATCTTGCCCAGTGA 0 0 GCATGGAAGCTGCAGCAGAG 0 0 NA NA 0 0 NA NA NA 10.1186/s12864-022-08788-y 35918639 1 Alternative_haplotypes_polished_genome t29760.P0000048 t29760 GST4_PCRgenomic 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000117F_003_arrow_pilon_ ATATCAAGCAGCGAGCTCCA 328889 328908 CCTCTTGGGAAAAAGCTTGG 329282 329263 NA NA 0 0 NA NA NA 10.1093/g3journal/jkac060 35302606 1 Alternative_haplotypes_polished_genome t29760.P0000049 t29760 GST4_PCRcDNA 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ATATCAAGCAGCGAGCTCCA 0 0 GGTGGAAGATGGTGATGAA 0 0 NA NA 0 0 NA NA NA 10.1093/g3journal/jkac060 35302606 1 Alternative_haplotypes_polished_genome t29760.P0000050 t29760 VrGSTF12_PCRfirst 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ATGGTGGTGAAGGTGTATGGTG 0 0 TCAAGAAGCAAGGTTCATGACTTTC 0 0 NA NA 0 0 NA NA NA 10.1093/g3journal/jkac060 35302606 1 Alternative_haplotypes_polished_genome t29760.P0000051 t29760 VrGSTF12_PCRsecond 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AATGGAAGATGGTGGTGAAG 0 0 GGATCTCAAGAAGCAAGGTT 0 0 NA NA 0 0 NA NA NA 10.1093/g3journal/jkac060 35302606 1 Alternative_haplotypes_polished_genome t29760.P0000052 t29760 VrGST4_KASP1 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000117F_003_arrow_pilon_ CTCGCTGATCTGAGTCATCTTCT 328992 329017 CCAGCTTCCTTCACCAAGTTTCTGAT 329044 329023 NA NA 0 0 NA NA NA 10.1093/g3journal/jkac060 35302606 1 Alternative_haplotypes_polished_genome t29760.P0000053 t29760 VrGST4_KASP2 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000117F_003_arrow_pilon_ CTCGCTGATCTGAGTCATCTTCC 328992 329017 CCAGCTTCCTTCACCAAGTTTCTGAT 329044 329022 NA NA 0 0 NA NA NA 10.1093/g3journal/jkac060 35302606 1 Alternative_haplotypes_polished_genome t29760.P0000054 t29760 ISSR1 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CACACACACACACAGATC 0 0 NA 0 0 NA NA 0 0 NA NA ISSR 10.3390/plants11030397 35161378 1 Alternative_haplotypes_polished_genome t29760.P0000055 t29760 ISSR2 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CACACACACACACAATCT 0 0 NA 0 0 NA NA 0 0 NA NA ISSR 10.3390/plants11030397 35161378 1 Alternative_haplotypes_polished_genome t29760.P0000056 t29760 ISSR3 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CACACACACACACAAGTC 0 0 NA 0 0 NA NA 0 0 NA NA ISSR 10.3390/plants11030397 35161378 1 Alternative_haplotypes_polished_genome t29760.P0000057 t29760 ISSR4 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TCTCTCTCTCTCTCACAT 0 0 NA 0 0 NA NA 0 0 NA NA ISSR 10.3390/plants11030397 35161378 1 Alternative_haplotypes_polished_genome t29760.P0000058 t29760 ISSR5 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TCTCTCTCTCTCTCAGTC 0 0 NA 0 0 NA NA 0 0 NA NA ISSR 10.3390/plants11030397 35161378 1 Alternative_haplotypes_polished_genome t29760.P0000059 t29760 ISSR6 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TCTCTCTCTCTCTCACGG 0 0 NA 0 0 NA NA 0 0 NA NA ISSR 10.3390/plants11030397 35161378 1 Alternative_haplotypes_polished_genome t29760.P0000060 t29760 ISSR7 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGTCACACACACACACAC 0 0 NA 0 0 NA NA 0 0 NA NA ISSR 10.3390/plants11030397 35161378 1 Alternative_haplotypes_polished_genome t29760.P0000061 t29760 ISSR8 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CGTCACACACACACACAC 0 0 NA 0 0 NA NA 0 0 NA NA ISSR 10.3390/plants11030397 35161378 1 Alternative_haplotypes_polished_genome t29760.P0000062 t29760 ISSR9 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AGATTCTCTCTCTCTCTC 0 0 NA 0 0 NA NA 0 0 NA NA ISSR 10.3390/plants11030397 35161378 1 Alternative_haplotypes_polished_genome t29760.P0000063 t29760 ISSR10 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GTGCTCTCTCTCTCTCTC 0 0 NA 0 0 NA NA 0 0 NA NA ISSR 10.3390/plants11030397 35161378 1 Alternative_haplotypes_polished_genome t29760.P0000064 t29760 ISSR11 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CAGCTCTCTCTCTCTCTC 0 0 NA 0 0 NA NA 0 0 NA NA ISSR 10.3390/plants11030397 35161378 1 Alternative_haplotypes_polished_genome t29760.P0000065 t29760 Indel-19 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100208 ATTGTAACATTTATGATGTGTCC 207336 207354 TAGCCTCTCCGGGATTTAG 207516 207496 NA NA 0 0 234, 182, 182, 181 NA NA 10.3390/plants10010024 33374373 1 Alternative_haplotypes_polished_genome t29760.P0000066 t29760 Indel-20 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100026 GAGACATAAGATTTTCTCTTGAGAGG 264494 264519 CCATCATTGCAATAAAAGCCAC 264690 264669 NA NA 0 0 169, 197, 197, 197, 197 NA NA 10.3390/plants10010024 33374373 1 Alternative_haplotypes_polished_genome t29760.P0000067 t29760 Indel-24 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100026 ATGTATGGACTGATGGATGA 460463 460482 ACCATTTCTAGCCCTTTG 461160 461143 NA NA 0 0 692, 772, 772, 771 NA NA 10.3390/plants10010024 33374373 1 Alternative_haplotypes_polished_genome t29760.P0000068 t29760 Indel-29 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100026 ACATCCTCTATCACCCATTTTC 542577 542598 GCCCAGCTTTACGCCTTT 543636 543619 NA NA 0 0 532, 1060, 1060, 1060 NA NA 10.3390/plants10010024 33374373 1 Alternative_haplotypes_polished_genome t29760.P0000069 t29760 Indel-27 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100026 AAGCAAATAAGAGCGACAGA 657401 657420 TTGATGGTGATGTGGGGG 657788 657771 NA NA 0 0 230, 297, 297, 297, 279 NA NA 10.3390/plants10010024 33374373 1 Alternative_haplotypes_polished_genome t29760.P0000070 t29760 Indel-23 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100026 ATTTATGCGCTAGGGGGG 814082 814099 TGGGCCAGAGAGATAATTTGTTGA 814569 814546 NA NA 0 0 488, 560, 560, 560, 560 NA NA 10.3390/plants10010024 33374373 1 Alternative_haplotypes_polished_genome t29760.P0000071 t29760 Indel-17 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100026 TCCTGCTGCTACTCGGTTC 882112 882130 GTAAGACAGAAGGCACAAAAATGC 882637 882614 NA NA 0 0 475, 527, 527, 166, 166 NA NA 10.3390/plants10010024 33374373 1 Alternative_haplotypes_polished_genome t29760.P0000072 t29760 indel-13 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTGAATAAGCCAGGAAGCGTT 0 0 TTGGATTTGGAAGGTTGAGGT 0 0 NA NA 0 0 361, 3160, 3161, 3160, 3182 NA NA 10.3390/plants10010024 33374373 1 Alternative_haplotypes_polished_genome t29760.P0000085 t29760 TSRNASNP120729221 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GTGAGCCCAGGGATTATGAA 0 0 TGAAGAACCAGCACGAACAG 0 0 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000086 t29760 TSRNASNP120731088 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_518 GGGAAGTTTAGCGAGGCTCT 2508997 2509016 CACAGGTGAAAACTCCAGCA 2509076 2509057 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000087 t29760 TSRNASNP120735535 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CTCCTGGTCAGGCTTCTCAG 0 0 CCTGAATTTGAGGAGCAGGT 0 0 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000088 t29760 TSRNASNP120728591 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000053F_008_arrow_pilon_ GTAAAACGGATGCCCTTCAA 73180 73199 CCGGTTGGGTTTCGATTTAT 73301 73282 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000089 t29760 TSRNASNP120729235 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTCTCGGGACTTCTCTTCCA 0 0 GCTGGATGCAGAGCCACTAT 0 0 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000090 t29760 TSRNASNP120731107 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GTCACCCGGTTAGGGACTCT 0 0 TCAAATGCTCTCCAGGGACT 0 0 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000091 t29760 TSRNASNPS120185697 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TAGAACGGAATCCGCAAATC 0 0 GGGAAATTCCACCGTTATGA 0 0 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000092 t29760 TSRNASNPS120206217 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_1109 ACAGGAGCTAATGGAACTGAG 112520 112539 CCCCCTCTCATCTTACGCTT 112668 112648 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000093 t29760 TSRNASNPS120206366 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000093F_007_arrow_pilon_ GCTCAATCTGGGATTCAGGA 55153 55172 TGGAAACTGGAGCAAACACA 55302 55283 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000094 t29760 TSRNASNPS120206375 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000093F_007_arrow_pilon_ GCAGTAAGTTATGAGGCACC 43062 43081 GGGTTTCCACGTTGAGAAGA 43216 43197 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000095 t29760 TSRNASNPS120206839 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000009F_005_arrow_pilon_ CCTGGCTAAAGAAACAACCA 95538 95557 TGCCACGTAATAAACGCAGA 95700 95681 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000096 t29760 TSRNASNPS120206984 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGGCTTTTGTGTACCCTTCA 0 0 CCTGTACTCTCTTCTTTTCCAC 0 0 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000097 t29760 TSRNASNPS120273500 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTGTGGCAGTGGTTGGACA 0 0 CCATTGATGCAGCGACACT 0 0 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000098 t29760 TSRNASNPS120275548 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_4897 GCAAGAAAAGCATGAGACCA 748415 748434 TCAAACATCCAACAGCAAGC 748533 748514 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000099 t29760 TSRNASNPS120275823 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_4897 ACCTGCTTTACTCTCTCCACT 1008681 1008701 GGAAGAAAACATCATCAAGGGT 1008845 1008824 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000100 t29760 TSRNASNPS120277213 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000048F_014_arrow_pilon_ GGGACATCAGTTGCTTAACAGT 136795 136814 TAGCCTCCATCTTGACACAG 136934 136913 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000101 t29760 TSRNASNPS120278360 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100540 TGGGGGCAAAACTAAGAAAA 363834 363853 ACATGAGCGGGAAGATGAAG 363957 363938 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000102 t29760 TSRNASNPS120279487 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100406 TCACCCTTCTCGGCCTTT 24181 24202 ACAGCGACTAAAACTAGAACAC 24354 24337 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000103 t29760 TSRNASNPS120280865 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_95 CCTCTGATAAAGGCAAAACCA 216531 216551 TAGACAGTTGTATGCTCCTGC 216665 216645 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000104 t29760 TSRNASNPS120346601 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Pc000282F_arrow_pilon_obj GATGCCAAGAAGCAGCAATC 606023 606042 TGACGCCTAAATCCCATGAT 606150 606131 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000105 t29760 TSRNASNPS120468689 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTCATACCCACCAAATTCAGG 0 0 AAAAGGAAATCACCTGGAGGA 0 0 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000106 t29760 TSRNASNPS120570749 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000098F_008_arrow_pilon_ TCCATGGCATTCCCTTATGT 117604 117623 GAGCATGACTCCAGGAAAGC 117734 117715 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000107 t29760 TSRNASNPS120571906 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000098F_008_arrow_pilon_ AACACAAGCCGACTGACCA 664198 664216 CAGACGCTACCACCTTCCAC 664366 664347 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000108 t29760 TSRNASNPS120572210 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000098F_008_arrow_pilon_ TTTCAAGATCAGGTAGTGCGTT 747222 747241 AAACAAGTATGCAGGGGGTCA 747374 747354 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000109 t29760 TSRNASNPS120668018 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_104 ACACGCTGTTCTTCAACCAG 3545207 3545226 GGAAAAAGGCCGAGGAAT 3545322 3545305 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000110 t29760 TSRNASNPS120671217 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000013F_026_arrow_pilon_ CAGCGAAAGTGTGACGAAAC 598960 598979 TTGAAAATGCGTTGAGGACT 599117 599098 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000111 t29760 TSRNASNPS120671218 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000013F_026_arrow_pilon_ TGCCTAAAAATTGAAGTGCGGA 599197 599218 CCTTATCCCCCTTGCTCTGC 599356 599337 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000112 t29760 TSRNASNPS120671409 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000013F_026_arrow_pilon_ GCATGCTGCTTCTCTGGAAT 734473 734492 CTGCATGCTGCTCCTACTTG 734635 734616 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000113 t29760 TSRNASNPS120730012 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000022F_009_arrow_pilon_ AAATGGCTTTGCCCGTGG 56535 56552 GAGGAACACAAGGAGGATGG 56672 56653 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000114 t29760 TSRNASNPS120734745 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_518 GCTGCTACTGAAACTACCGA 362570 362591 GCTTGGAATACCTACAAATGCT 362725 362706 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000115 t29760 TSRNAINDELS120025818 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_1109 GATGGACCCTGGAGAGACAA 106989 107008 CAGAGAAAGGGAACCGAAGA 107287 107268 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000116 t29760 TSRNAINDELS120073669 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000098F_008_arrow_pilon_ TGAGAGGAGCCTGAGGGTTA 506544 506563 AGAGATGAGAGAGGCCACCA 506718 506699 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000117 t29760 TSRNAINDELS120073728 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000098F_008_arrow_pilon_ CAACCTCACACACCCTCAAA 643767 643786 GGCACTGATCACACAAAACG 644107 644088 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000118 t29760 TSRNAINDELS120073761 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000098F_008_arrow_pilon_ TGAAACCCCATATCCGAAAA 722302 722321 TTGTGTATTGGCTGCAGAGC 722548 722529 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000119 t29760 TSRNAINDELS120073788 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CGCCGTTCATCCACACTACT 0 0 GAAGCCTTGCTGGGACAATA 0 0 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000120 t29760 TSRNAINDELS120095050 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AAGCGTGCAACTCACTGATG 0 0 ATCCTTGGGGAAATGGATTC 0 0 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000121 t29760 TSRNAINDELS120095636 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_518 GAAGAGCGAAGATCGGTGTC 398864 398883 CAGAAACTTCCACCCAGCAT 399079 399060 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000122 t29760 TSRNAINDELS120095711 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_518 TTCTCCAATCTTTGGCATCA 56290 56309 GAGGCAGGGTATGCTTTGAG 56484 56465 NA NA 0 0 NA NA NA 10.1186/s12870-020-02564-4 32746778 1 Alternative_haplotypes_polished_genome t29760.P0000123 t29760 MYBA1-F__MYBA1-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000051F_013_arrow_pilon_ TAGTCACCACTTCAAAAAGG 22343 22362 GAATGTGTTTGGGGTTTATC 22408 22389 NA NA 0 0 66 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000124 t29760 MYB-F__MYB-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GATGTTAATACAAGGCTGGTCCG 0 0 TTCTGATTGGATGAGAGGGAGAG 0 0 NA NA 0 0 137 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000125 t29760 PAL-F__PAL-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000017F_006_arrow_pilon_ TTGAAGCTGCGGCTATTA 99642 99659 TCTGAGGACCCAACCACT 99788 99771 NA NA 0 0 147 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000126 t29760 C4H-F__C4H-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CTTGAGGAGAGGAAGAAGCTGG 0 0 CAATGTAAAGGACGTTGTCCTCG 0 0 NA NA 0 0 127 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000127 t29760 4CL-F__4CL-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GTTATCGATGTGCCTAGCCTTC 0 0 CGGGATCGTTCAAGTATCCTTTC 0 0 NA NA 0 0 188 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000128 t29760 CHS1-F__CHS1-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100458 CCCTAAAGCCCGAGAAGT 227465 227483 AATAAACAACACGCAAGCA 227547 227530 NA NA 0 0 83 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000129 t29760 CHI-F__CHI-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000171F_004_arrow_pilon_ CACCAACGACCTCTTCCT 54543 54560 ACAGTCTTGCCCTTCCAC 54757 54740 NA NA 0 0 215 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000130 t29760 F3'H-F__F3'H-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GCCTCCGTTGCTGCTCAGTT 0 0 GAGAAGAGGTGGACGGAGCAAATC 0 0 NA NA 0 0 167 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000131 t29760 F3'5'H-F__F3'5'H-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AAACCGCTCAGACCAAAACC 0 0 ACTAAGCCACAGGAAACTAA 0 0 NA NA 0 0 100 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000132 t29760 F3H-F__F3H-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_5553 CTCCTACCCACTACGAACC 777435 777453 CAGACAACACCTCCAGCA 777562 777545 NA NA 0 0 128 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000133 t29760 DFR-F__DFR-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Pc000089F_arrow_pilon_subs TTCACCTGGATGACCTCT 276149 276166 ATGATACAATCGTGGGAG 276242 276225 NA NA 0 0 94 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000134 t29760 LDOX-F__LDOX-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AGGATTTCATGGGCAGTT 0 0 GAGGTGGGAAGAGTGGTG 0 0 NA NA 0 0 103 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000135 t29760 UFGT-F__UFGT-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100048 ACCCACCTCGGTCGTGTA 1541224 1541241 CCCTTGCCTTGTCCCTTA 1541354 1541337 NA NA 0 0 131 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000136 t29760 OMT-F__OMT-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGGTCTTCCAATCATCGAGAAAG 0 0 GTTCAGGTAGTTGTCCTTGTCAG 0 0 NA NA 0 0 157 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000137 t29760 3AT-F__3AT-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_755 CACCATTACCAGGCATTT 1350072 1350090 CCTCCCTTAGTAGACCCAC 1350191 1350174 NA NA 0 0 120 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000138 t29760 GST-F__GST-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000117F_003_arrow_pilon_ GAGGAGAAAGCGGTAGTTG 329160 329177 CCCATTCGAGGTAGGATC 329263 329245 NA NA 0 0 104 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000139 t29760 GST2-F__GST2-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AGCCCATTTGTGAGTCTCTGATA 0 0 TCCAAGTTCATAGAGCTTCTTGTC 0 0 NA NA 0 0 146 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000140 t29760 MATE-F__MATE-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_284 ACGATCATAGTCCTTCTCACTGG 4510730 4510752 GATGTCCATATCCGAGCTCATTG 4511107 4511085 NA NA 0 0 160 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000141 t29760 ABCC-F__ABCC-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_11 TCAGTCCCCATGGATACTAACAG 1355998 1356020 CTTTCACCTATTTCCGTGAGGTC 1356153 1356131 NA NA 0 0 156 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000142 t29760 HY5-F__HY5-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGAACAAGCTACGAGTTCTCTTG 0 0 CTCCATTCCTTCCTTTACTTCGG 0 0 NA NA 0 0 100 NA NA 10.1186/s12870-020-02517-x 32605636 1 Alternative_haplotypes_polished_genome t29760.P0000143 t29760 fw01/rv01 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GACTTCATAATACCATTGTTTCAAA 0 0 GACTTCGTAATACCATTGTCTCAAA 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000144 t29760 fw02/rv02 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GACGCGTGTTAGATTGCATTCTCTATAACA 0 0 GACACGTGTTAGATTGCATTCTCTATTACA 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000145 t29760 fw03/rv03 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GTTGGTACGGAATTGGCCAT 0 0 GTTGGTACAGAATTGGCCAT 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000146 t29760 fw04/rv04 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTTGGTTAGGTAGAGTCTTTTCCTTTTGAGCATGTGA 0 0 TTTGGTTAGGAAGAGTCTTTTCCTTTTGAGCATGTGG 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000147 t29760 fw06/rv06 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGCGTTTTTGTTCATTTC 0 0 TGCGTTTTTGTTAATTTC 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000148 t29760 fw08/rv08 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CAGTGACTATGACACTGTTTG 0 0 CAGTGACTATAACACTGTTTG 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000149 t29760 fw09/rv09 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CTTTCATTTCCGACAAACATC 0 0 CTTTCATTTCTGACAAACATC 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000150 t29760 fw10/rv10 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AAAACCAAAAACAT 0 0 AAAACCGAAAACAT 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000151 t29760 fw11/rv11 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CCACATACCCGGGTCGCCAAA 0 0 CCACATACCCCGGTCGCCAAA 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000152 t29760 fw12/rv12 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AAGACAGCAAGGTTAGACCTT 0 0 AAGACAGCAAAGTTAGACCTT 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000153 t29760 fw14/rv14 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GCTTCTTCAACACTGTAAGCT 0 0 GCTTCTTCAATACTGTAAGCT 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000154 t29760 fw15/rv15 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGTAGCTAGATGTTGTGTAAA 0 0 TGTAGCTAGAGGTTGTGTAAA 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000155 t29760 fw17/rv17 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ACATTCATAACGCAACTCTTC 0 0 ACATTCATAATGCAACTCTTC 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000156 t29760 fw18/rv18 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GAAATATCTATATAAAG 0 0 GAAATATATATATAAAG 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000157 t29760 fw20/rv20 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CTTGAGAACACGTGTTTGACA 0 0 CTTGAGAACATGTGTTTGACA 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000158 t29760 fw21/rv21 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AGAAAATAATCATCAAGATGA 0 0 AGAAAATAATTATCAAGATGA 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000159 t29760 fw23/rv23 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TCCTCCCGCTTGCAAC 0 0 TCCTCTCGCTTGCAAC 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000160 t29760 fw25/rv25 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CTAAAACATTTATCAGTTCCA 0 0 CTAAAACATTCATCAGTTCCA 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000161 t29760 fw53/rv54 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CTTTATTTATATGTGTGTAGAAG 0 0 CTTTATTTATACGTGTGTAGAAG 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000162 t29760 PN97-chr19_690_F__PN98-chr19_690_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_208 TATCTTTGTTCCGGTGTTTGTG 784908 784929 CGTCCAAGTTACAACCCTAACC 785096 785075 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000163 t29760 PN95-chr19_401_F__PN96-chr19_401_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AATAAGGCATGCAACTCTCCAT 0 0 AAGCACATGCAAATTATTGTGG 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000164 t29760 PN93-chr18_122_F__PN94-chr18_122_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ACCTCAAGGCTTTCCTTTCTTT 0 0 TGAGATGCTCATTCTCACTCTTT 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000165 t29760 PN91-chr18_1196_F__PN92-chr18_1196_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AATAGTTTGTCTTCGGACCATTG 0 0 TCAATTGCTTTCATCATCATCC 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000166 t29760 PN89-chr17_2278_F__PN90-chr17_2278_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TCATAATAAATGGCTATATGTGGAAAA 0 0 AAAGTTGTCATCAAGAAAGAATCAAA 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000167 t29760 PN87-chr17_1755_2_F__PN88-chr17_1755_2_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_4897 TGGCCCCAAGTTGTTTATTCTA 1799753 1799774 GGGTAGTGGGTACTGAGTCCTG 1799962 1799941 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000168 t29760 PN85-chr16_2536_3_F__PN86-chr16_2536_3_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AAATATCGAAGCAGGAGAGGTG 0 0 ATGCTGCAACATTCTTCTTCTG 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000169 t29760 PN83-chr16_2469_F__PN84-chr16_2469_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000011F_003_arrow_pilon_ GGAAAATTGGGTTCATTTCCTT 27743 27764 ATGAGCTGGTCGACCTATGTTT 27918 27897 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000170 t29760 PN81-chr15_2695_1_F__PN82-chr15_2695_1_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_148 CCCTTTAGGGTTCATACATACCA 140296 140318 TGACAAAGATTCAATTGCGATAA 140547 140525 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000171 t29760 PN79-chr15_1739_F__PN80-chr15_1739_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Pc000347F_arrow_pilon_obj TGCTCATGTTCATTTGCTCTCT 192926 192950 AAAATGGACAACTTTTGTTTATCTC 193115 193094 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000172 t29760 PN77-chr14_3981_F__PN78-chr14_3981_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000110F_010_arrow_pilon_ TTCCACCAAAACTTATGAATGC 77650 77671 GCTCGATGACCCTCTCTTAGAA 77922 77901 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000173 t29760 PN75-chr14_3338_F__PN76-chr14_3338_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100532 CTTGTTTTAGCCTTTTGGCAGT 831233 831254 GAGAACTCAGATTGCACCCTTC 831504 831483 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000174 t29760 PN73-chr14_3302_F__PN74-chr14_3302_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100532 TAGTCCGAAGAAGGATTTGGAA 649433 649454 CTTTCTCCCCTATTTGATGTGC 649682 649661 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000175 t29760 PN71-chr13_4488_3_F__PN72-chr13_4488_3_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_150 TAACCCCATTTGCTCTCTCAAT 999352 999373 ATTTTCCCTCACTGAATTGGAA 999541 999520 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000176 t29760 PN69-chr13_4443_F__PN70-chr13_4443_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGCTTTTCATTACGTGATCTCC 0 0 TTGTTTTGGTTGTTGAGTTTCG 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000177 t29760 PN67-chr13_4442_F__PN68-chr13_4442_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CCACTTCCTGAACCACTACCTC 0 0 GTCTTTGATTGGTTGGGTTCTC 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000178 t29760 PN65-chr12_1720_1_F__PN66-chr12_1720_1_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100531 GCGGGGTACAGGGTATACTTTT 225687 225709 GTTTTACGAATTGGGAATGATTT 225933 225912 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000179 t29760 PN63-chr12_1571_F__PN64-chr12_1571_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CGGGTTGATTAAGTTGCAAGA 0 0 TGAGCTCAGGTCAAAGTTCAAA 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000180 t29760 PN61-chr11_1508_F__PN62-chr11_1508_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_1916 GCAAATGATGGCTTTCACTCTT 1229417 1229438 TGAGAGCGAAATTTTAGATTCAAG 1229930 1229907 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000181 t29760 PN59-chr11_1476_F__PN60-chr11_1476_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ATTTGAATTCACGGATCTTGCT 0 0 CCAGCCCACTGTCATTTCTTAT 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000182 t29760 PN57-chr10_1737_2_F__PN58-chr10_1737_2_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TCATTCACGCTCATTCACTTGT 0 0 TGGCCATTACCTTTCTTCCTTA 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000183 t29760 PN55-chr10_1699_3_F__PN56-chr10_1699_3_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CTCGAGTTTCGAACATCTCCTC 0 0 CCCCGATGTACAAGTAAGGAAC 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000184 t29760 PN53-chr09_620_F__PN54-chr09_620_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Pc000429F_arrow_pilon_obj CTGGTATCCCCATACCCTGATA 51739 51760 ACTGAAGAACTGGCCTGAGAAG 52003 51982 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000185 t29760 PN51-chr09_615_F__PN52-chr09_615_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Pc000429F_arrow_pilon_obj TGGTGAACGGAAGAAAGGTAAT 34307 34328 GAGATCAACATTTCCAACACCA 34522 34501 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000186 t29760 PN49-chr09_608_3_F__PN50-chr09_608_3_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ATGGTCCTCAAGTGTTCTCACA 0 0 CAGGAAGGCTCTGCTTAATGAT 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000187 t29760 PN47-chr09_603_1_F__PN48-chr09_603_1_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGGATTTTGTTCATTGGTTGAG 0 0 TGTGGAATGACAAAGAAACAGG 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000188 t29760 PN45-chr08_2042_2_F__PN46-chr08_2042_2_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000013F_026_arrow_pilon_ TTGCTCTATTCTTTTAATGTCTCTCA 1838726 1838751 TCTTAATGGGATCGAGCTGTTT 1839064 1839043 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000189 t29760 PN43-chr07_1555_F__PN44-chr07_1555_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_497 TAGAGTGCCTTGAGCTTCTTCC 4082592 4082614 TGCCTATGTCTATGCTCCTCTTT 4082906 4082885 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000190 t29760 PN41-chr07_1443_F__PN42-chr07_1443_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGTGGAGTGTTCCATTCTTCTC 0 0 CCACTCAAGTTGAATTGTTCCA 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000191 t29760 PN39-chr07_1372_F__PN40-chr07_1372_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGCATGTAATAACAATGTGACCA 0 0 GGACTTTGCCATAAAAGACGAG 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000192 t29760 PN37-chr06_800_1_F__PN38-chr06_800_1_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Pc000130F_arrow_pilon_subs TGACAAAATCATTCTTCAAAGC 1459832 1459855 CAAACATCTTTAATTGTGTTTCCA 1460065 1460044 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000193 t29760 PN35-chr06_1433_F__PN36-chr06_1433_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_159 CACATTCCCATAAAATCCACCT 1185401 1185422 AAGAGGTCTGATGCTTGGTGTT 1185617 1185596 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000194 t29760 PN33-chr05_1219_F__PN34-chr05_1219_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TCGGATTATTTCATTGTTTGTTG 0 0 TGAATTAACCCTCATTTGAACG 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000195 t29760 PN31-chr05_1208_3_F__PN32-chr05_1208_3_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TATAGGTAGGGTGGCTTTGCTC 0 0 TATTCATGTGACCCCAAAATCA 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000196 t29760 PN29-chr05_1108_F__PN30-chr05_1108_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000019F_006_arrow_pilon_ GGGATGGTGGTTAGTAGCACTC 62787 62808 AAGAAACAACAAGAGCCCAAA 63023 63003 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000197 t29760 PN27-chr04_1618_F__PN28-chr04_1618_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_1453 CCCATTTATAGATTGGTCACAATG 1768652 1768672 GCATGCTCGATCTAGTTTTCCT 1768950 1768927 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000198 t29760 PN25-chr03_747_F__PN26-chr03_747_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTGTGGCTGCACTCTAAGAAAA 0 0 GGGATTGAGATGTTAGGTCAGC 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000199 t29760 PN23-chr02_760_F__PN24-chr02_760_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CAAAATGCCCTTCATCAATTTT 0 0 GGCTCTGCTACTATCAACCACA 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000200 t29760 PN21-chr02_729_F__PN22-chr02_729_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGCTTCTTGGAGAAACACTTGA 0 0 ATGATTGTGGGGATGATTTCTC 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000201 t29760 PN19-chr1_380046_F__PN20-chr1_380046_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_81 ACCAAAAGAAGGAACAAGGTCA 401864 401885 TATGCAGGAATCAATTGCAAAC 402078 402057 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000202 t29760 PN17-chr1_366752_F__PN18-chr1_366752_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_81 ATTAGTGCCCTTGCTCTCTCAC 382204 382225 AAAGAATGTTCGAGGGACTTGA 382587 382566 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000203 t29760 PN15-chr1_305625_F__PN16-chr1_305625_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TCAGTACCCAACAAAATTCAGG 0 0 AACTCACAAAATGCCATTAGCC 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000204 t29760 PN13-chr1_222992_1_F__PN14-chr1_222992_1_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_81 TTGGATTAGGGTTTGTGGAAAG 239643 239664 TGGAAGTGCATCAATGAGAGAT 239945 239924 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000205 t29760 PN11-chr1_210007_F__PN12-chr1_210007_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_81 TTTCCGAGCTTGTACTGACTGA 227517 227538 GATTGCGATGCTACATCTCTTG 227724 227703 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000206 t29760 PN09-chr1_107807_F__PN10-chr1_107807_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_81 AACTGTGATTGGGCTTGTTCTT 132658 132679 ATTGGTGGATGTGGAGAGAGTT 132948 132927 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000207 t29760 PN07-chr1_106582_F__PN08-chr1_106582_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_81 GGGAAATTCAATATCATGCACA 131467 131488 TTTTGTTTCCCTTTTCTTTTCA 131695 131674 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000208 t29760 PN05-chr1_100137_2_F__PN06-chr1_100137_2_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_81 GTTGCACAGGCATGAAAGATAG 124957 124978 AGGTTCTATGATTGGCTGGTGT 125260 125239 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000209 t29760 PN03-chr1_98474_F__PN04-chr1_98474_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_81 CTTCTGACGCTCTTCCTGAAAT 123315 123336 TGGACGGAATTGTAGTCAACAC 123504 123483 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000210 t29760 PN01-chr1_43023_F__PN02-chr1_43023_r 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_81 GCATCGACCAACTACAATTCAA 76899 76920 TGCCTGGTTTCTATGAATGATG 77192 77171 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000211 t29760 ccrv__ccfw 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CTCGTATGTTGTGTGGAATTGTGAGC 0 0 GGATGTGCTGCAAGGCGATTAAGTTGG 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2020.00156 32194587 1 Alternative_haplotypes_polished_genome t29760.P0000216 t29760 GSLP1 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CCAGTTCGCCCGTAAATG 0 0 NA 0 0 NA NA 0 0 NA NA DNA probe 10.1007/s13205-019-1993-0 31824815 1 Alternative_haplotypes_polished_genome t29760.P0000218 t29760 OPB 151274 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CGGCAGACCTTACTGAAAGGATGAGT 0 0 CAACCACCATCCAATGATGGCGGGCTTC 0 0 NA NA 0 0 1274 NA NA 10.1007/s13205-019-1993-0 31824815 1 Alternative_haplotypes_polished_genome t29760.P0000219 t29760 S382-615 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGGGCGTCAA 0 0 NA 0 0 NA NA 0 0 NA NA NA 10.1007/s13205-019-1993-0 31824815 1 Alternative_haplotypes_polished_genome t29760.P0000220 t29760 VvGNAT10-F__VvGNAT10-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGATCCATCGCCAACTCTTCTGATGTTCCC 0 0 CTCGAGACTAAAACTTTCGTAAGCTTGAAGAGC 0 0 NA NA 0 0 NA NA NA 10.1186/s12864-019-6085-3 31747891 1 Alternative_haplotypes_polished_genome t29760.P0000221 t29760 VvGNAT15-F__VvGNAT15-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGATCCGCGGCGGTGGAAGAGGATG 0 0 CTCGAGGATGGATCTCCTGAAGCAAGAGC 0 0 NA NA 0 0 NA NA NA 10.1186/s12864-019-6085-3 31747891 1 Alternative_haplotypes_polished_genome t29760.P0000222 t29760 VvGNAT16-F__VvGNAT16-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGATCCGCTTCCGCCCGGCCCTCCCA 0 0 CTCGAGCTTGTTTCGCTTCCTGGAATACACC 0 0 NA NA 0 0 NA NA NA 10.1186/s12864-019-6085-3 31747891 1 Alternative_haplotypes_polished_genome t29760.P0000223 t29760 VvGNAT17-F__VvGNAT17-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGATCCGCCGAAACTGTATCCGAGGACCA 0 0 CTCGAGCACATCATAGTTGACAGGGAGACC 0 0 NA NA 0 0 NA NA NA 10.1186/s12864-019-6085-3 31747891 1 Alternative_haplotypes_polished_genome t29760.P0000224 t29760 SubVvSNAT-F__SubVvSNAT-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGTACCATGTTGCTACGTGGCATCGTAT 0 0 TCTAGAAAATTTATTGTTTCGCTTCCTGG 0 0 NA NA 0 0 NA NA NA 10.1186/s12864-019-6085-3 31747891 1 Alternative_haplotypes_polished_genome t29760.P0000225 t29760 De-Kana-F__De- VvSANT-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AGCAAGGTGAGATGACAGGAGA 0 0 GAGAGGGTTGAGGGTAGAGGG 0 0 NA NA 0 0 NA NA NA 10.1186/s12864-019-6085-3 31747891 1 Alternative_haplotypes_polished_genome t29760.P0000226 t29760 qAtPR1-F__qAtPR1-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGAGCTACGCAGAACAACTAAGA 0 0 CCCACGAGGATCATAGTTGCAACTGA 0 0 NA NA 0 0 NA NA NA 10.1186/s12864-019-6085-3 31747891 1 Alternative_haplotypes_polished_genome t29760.P0000227 t29760 qAtNPR1-F__qAtNPR1-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GCTCTGCTCGTCAATGGTTATC 0 0 GAGGAGTCGGTGTTATCGGTAG 0 0 NA NA 0 0 NA NA NA 10.1186/s12864-019-6085-3 31747891 1 Alternative_haplotypes_polished_genome t29760.P0000228 t29760 qAtPDF1.2-F__qAtPDF1.2-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TCATGGCTAAGTTTGCTTCC 0 0 AATACACACGATTTAGCACC 0 0 NA NA 0 0 NA NA NA 10.1186/s12864-019-6085-3 31747891 1 Alternative_haplotypes_polished_genome t29760.P0000229 t29760 qAtCOI-F__qAtCOI-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GTGTCCTAATTTGGAAGTTCTCG 0 0 CTCCATTCCTTGTTCATCTGC 0 0 NA NA 0 0 NA NA NA 10.1186/s12864-019-6085-3 31747891 1 Alternative_haplotypes_polished_genome t29760.P0000230 t29760 β-TUB 4-F__β-TUB 4-R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GAGGGAGCCATTGACAACATCTT 0 0 GCGAACAGTTCACAGCTATGTTCA 0 0 NA NA 0 0 NA NA NA 10.1186/s12864-019-6085-3 31747891 1 Alternative_haplotypes_polished_genome t29760.P0000231 t29760 WS15__XY89 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000148F_004_arrow_pilon_ TCCCACCTGATCTTGTGCTT 295038 295057 AAGTTTTGCAGGGGAAGGTT 296334 296315 NA NA 0 0 NA NA NA 10.1111/tpj.14588 31663642 1 Alternative_haplotypes_polished_genome t29760.P0000232 t29760 WS12__XY89 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AAAGGCGAGTCCATCTGAAG 0 0 AAGTTTTGCAGGGGAAGGTT 0 0 NA NA 0 0 NA NA NA 10.1111/tpj.14588 31663642 1 Alternative_haplotypes_polished_genome t29760.P0000233 t29760 WS35__WS36 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000148F_004_arrow_pilon_ ACCAACCAATCCCAATTCCA 296366 296385 TTCGCCTACCTCGGGTTT 297945 297928 NA NA 0 0 NA NA NA 10.1111/tpj.14588 31663642 1 Alternative_haplotypes_polished_genome t29760.P0000234 t29760 XY41__XY42 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100406 TTCTCGTTGAGGGCTATTCCA 20101 20121 CCACAGACTTCATCGGTGACA 20589 20569 NA NA 0 0 NA NA NA 10.1111/tpj.14588 31663642 1 Alternative_haplotypes_polished_genome t29760.P0000235 t29760 PP2A_F__PP2A_R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TAACGTGGCCAAAATGATGC 0 0 GTTCTCCACAACCGCTTGGT 0 0 NA NA 0 0 NA NA NA 10.1111/tpj.14588 31663642 1 Alternative_haplotypes_polished_genome t29760.P0000236 t29760 XY96__XY97 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AACAGGTCTCAGGCTCCATGGCAACAGGGATGATGGTG 0 0 AACAGGTCTCACTGAGTTATCGTGGGGTGACCGAGA 0 0 NA NA 0 0 NA NA NA 10.1111/tpj.14588 31663642 1 Alternative_haplotypes_polished_genome t29760.P0000237 t29760 XY98__SA01 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AACAGGTCTCACATCATTCCCCCCATCAAAATC 0 0 ACCTGAGTTATCGTGGGGTG 0 0 NA NA 0 0 NA NA NA 10.1111/tpj.14588 31663642 1 Alternative_haplotypes_polished_genome t29760.P0000238 t29760 AtLs3233F__AtLs3297R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ATGGCGATCTTTGATTCGTT 0 0 CCACCGTTGCTCTAGGGTTA 0 0 NA NA 0 0 NA NA NA 10.1111/tpj.14588 31663642 1 Alternative_haplotypes_polished_genome t29760.P0000239 t29760 WS98__WS99 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ACCCCACGATAACTCAGGTG 0 0 CAGAGACGAGATGCAGGGTA 0 0 NA NA 0 0 NA NA NA 10.1111/tpj.14588 31663642 1 Alternative_haplotypes_polished_genome t29760.P0000240 t29760 v19p__v19q 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTGCTGCTGTTTGTGCTCTT 0 0 CCTTGGCTCTCAGTCTGCTA 0 0 NA NA 0 0 4784 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000241 t29760 v19h__v19i 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Pc000373F_arrow_pilon_obj CATTTTGAAAATCGGGCCGC 341026 341045 TCTAGATTGAGCTGGGCCTG 343012 342993 NA NA 0 0 1988 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000242 t29760 v23a__v23b 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ACCAATTCCCTCCTTCCCTG 0 0 CTAAAGCCTACAACGCCGTC 0 0 NA NA 0 0 3994 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000243 t29760 BA44__BA45 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AGCACTTTCCAGAAATACCCTG 0 0 GTTTTCTGATGCTCTGCCCTG 0 0 NA NA 0 0 2385 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000244 t29760 BA36__BA73 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGGGTATAAATGCAGGGCCTT 0 0 GGGTGCTGACTCCTTGTACC 0 0 NA NA 0 0 3273 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000245 t29760 BA28__BA29 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100343 TCAGAGGTACCTTGCAGTTGAG 507423 507444 TCTCCATGGATCACACTAGTTTT 508732 508710 NA NA 0 0 1309 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000246 t29760 v07O__v07P 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AAAAGCTAGGTGTTATGGGCAA 0 0 GGGAATTGAGAGATGGCTAACA 0 0 NA NA 0 0 5900 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000247 t29760 v07R__v07S 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTGAATTTGTTACCGGTTGATG 0 0 GATTTAAATGTCCCAAGCCAAA 0 0 NA NA 0 0 6484 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000248 t29760 v07T__v07U 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TCAAAGTTCAAAGGAGTTGTGC 0 0 TTTAGGAAAAGGACAAGGACCA 0 0 NA NA 0 0 6620 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000249 t29760 v08X__v08Y 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GTATGGCCAGGTTTTACTCAGC 0 0 TTAGAGTCCCTGCAACTAACCC 0 0 NA NA 0 0 6757 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000250 t29760 v08Z__v09A 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGGTTAGTTGCAGGGACTCTAA 0 0 CTATGTAGATCCCTCGAAGCCT 0 0 NA NA 0 0 6837 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000251 t29760 v08R__v08S 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGTGGCTGCTCCAGTTAAAGTA 0 0 CTGTCTAAGCCAATGTTGGATATT 0 0 NA NA 0 0 4913 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000252 t29760 v08N__v08O 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CCACATCGAGTGATTATTTAGATTT 0 0 CACCCAGCAATCTCTATTCCTC 0 0 NA NA 0 0 4259 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000253 t29760 v08P__v08Q 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GAGGAATAGAGATTGCTGGGTG 0 0 GACCAATTCAAGACGGAGAAAG 0 0 NA NA 0 0 4282 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000254 t29760 BA26__BA27 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CCAAGCAAGGAAAAGGGCATAA 0 0 GGAACAAAAGTGACATAGGGAGA 0 0 NA NA 0 0 2884 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000255 t29760 v08J__v08K 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ACAGCAAACCGTAGAGAAGAGG 0 0 CCTGGTTAGAATAAAGCAGGAGG 0 0 NA NA 0 0 6357 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000256 t29760 v12T__v12U 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AGACAATCGTTCAATTTCGGAT 0 0 ATTTCCGAGGACTATGGGAGAT 0 0 NA NA 0 0 6119 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000257 t29760 v12P__v12Q 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AGGAGGTTTGTGAACGTTGG 0 0 CCCATGACACCTCTGGACTT 0 0 NA NA 0 0 3097 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000258 t29760 v13L__v13M 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTGTGTTTATTCCTGAAAGGGG 0 0 AATCGAAAGTAGTGTTTGGGGA 0 0 NA NA 0 0 6523 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000259 t29760 v12J__v12K 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000027F_001_arrow_pilon_ TAGCCAGGAAAGGATGGATG 825464 825483 ACGATTCCCCACTGAGTTTG 827099 827080 NA NA 0 0 1633 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000260 t29760 v12L__v12M 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000027F_001_arrow_pilon_ GGCCTGACTGCTTGGTATGT 824313 824332 GGCCTGGCCATAAATCATTA 825655 825636 NA NA 0 0 1369 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000261 t29760 v030__v031 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ACGAAACTCGGACTTGCACT 0 0 GAAGCACTCCCATGAAAAGC 0 0 NA NA 0 0 6590 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000262 t29760 v08F__v08G 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ACATAGTCCAATCCATAGGGGA 0 0 GAGAGTGTCAGTCAGTTGGGG 0 0 NA NA 0 0 4572 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000263 t29760 v08D__v08E 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GAGGATTTTGGGTGAGATCTGT 0 0 TTTTCTTTCTCTTATTGTCTCCCAA 0 0 NA NA 0 0 5971 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000264 t29760 BA30__BA31 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ATTCTCATCATTCTCGCCACTC 0 0 AATTCGCATGTGGATCTGTGA 0 0 NA NA 0 0 3812 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000265 t29760 v16K__v16L 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CCCTTGGGTTGCTGTTTCAA 0 0 TTAGTTCACCCATGCTTGCC 0 0 NA NA 0 0 5166 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000266 t29760 BA34__BA72 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000002F_002_arrow_pilon_ TTGAGTCGAGGGTCATCTACAG 183509 183528 CCCACTTGACATGGTCCCTC 184435 184414 NA NA 0 0 926 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000267 t29760 BA32__BA33 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CTGACCTGTCTTCCCTCTTTCT 0 0 ATAGTGCTAGGAAGGGGAGTTG 0 0 NA NA 0 0 3515 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000268 t29760 v205__v206 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TATTGTTCCTTCCCCGTGCT 0 0 GCACAAGTACAACCACCCTG 0 0 NA NA 0 0 10365 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000269 t29760 v207__v208 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CGGGAACTGCATTTTAGTGTCA 0 0 CCAACACCCATGCAAACTCA 0 0 NA NA 0 0 6222 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000270 t29760 v20s__v20t 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AGGTCGGTTAGGCGTGTAAA 0 0 CGGAAGGTTTTGAAGGCGAA 0 0 NA NA 0 0 6204 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000271 t29760 v20w__v20x 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGCATCATTTTCCATTCCCTCT 0 0 GCGAAATCTCTCTTGCAGCA 0 0 NA NA 0 0 5644 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000272 t29760 v21x__v21y 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ACTGACCAGGGACGTGAATT 0 0 ACATCCCAACATCCAAGCATG 0 0 NA NA 0 0 3100 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000273 t29760 v22m__v22n 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGGGAGTGACTCGAATGCAT 0 0 CTTCAATGGTGTCTGGGTGC 0 0 NA NA 0 0 3883 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000274 t29760 v23e__v23f 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AGCGGAGATGGACAGAAACA 0 0 CTGAGGTTGAGGGTTCGAGT 0 0 NA NA 0 0 4690 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000275 t29760 v203__v204 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TCGGTGCGTTGGATTGTTTT 0 0 GTGAAGGGACAGGCAAGTTG 0 0 NA NA 0 0 7965 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000276 t29760 v23g__v23h 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ATTTGGTGGTCTTGGCAACC 0 0 TGCAAAGAAACGTGTCAGGG 0 0 NA NA 0 0 4817 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000277 t29760 v22a__v22b 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGGATTGTGAGAAACGGTGG 0 0 AAGTACCCTTGCTCTGCTGT 0 0 NA NA 0 0 5093 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000278 t29760 v23m__v23n 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GCTCTTCACTGCCAAACACA 0 0 CGAGCACTCTTCCATGCTTC 0 0 NA NA 0 0 6046 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000279 t29760 v23k__v23l 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ATTCCGTTGCTTGACCGATG 0 0 TTCCTGCCAAAAGTGACAGC 0 0 NA NA 0 0 6149 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000280 t29760 v232__v233 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000123F_010_arrow_pilon_ GGACACACACACAAGCACAT 146129 146148 GCCAGCCAAATTAAACCCCA 147712 147693 NA NA 0 0 1583 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000281 t29760 v22c__v22d 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ATTTGCTCCAACTCCCCTCA 0 0 GTGCACCAACCACGAATTCT 0 0 NA NA 0 0 2851 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000282 t29760 v23t__v23u 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTTAGATACAGGCCGCCACA 0 0 CAACGTCTTGTGGTCCAGTG 0 0 NA NA 0 0 5297 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000283 t29760 v19z__v191 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GAAGAGCTCATTGGACAGCA 0 0 CTCTTGTGCAACTGTGGAACA 0 0 NA NA 0 0 6646 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000284 t29760 v192__v193 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GATGGGTTCTGGGGAGAGTC 0 0 GAAGAACATGGCATCAGGGG 0 0 NA NA 0 0 4501 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000285 t29760 v194__v195 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ATGAGGGAGAGGGCAAAGTC 0 0 GGGGTTGGTGTGGTCAAATC 0 0 NA NA 0 0 8491 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000286 t29760 v196__v197 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100272 CCACACCTCAGTCGTCAGTA 138930 138949 AAGGTGGGTGAGAGCCAATT 140564 140545 NA NA 0 0 1631 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000287 t29760 v20a__v20b 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100482 GTGGGGCTCTTGGGAATTTG 368857 368876 ACCTGCCCACAAACGATTTC 370874 370855 NA NA 0 0 2005 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000288 t29760 v23v__v23w 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GTGAGAACGGAGCCAAACAG 0 0 CACACCCTGAAGCTAGACCA 0 0 NA NA 0 0 6625 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000289 t29760 v20c__v20d 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CGGACCCCTTCAGATTGTCT 0 0 ATTGTGAATGGGGCTGTTCC 0 0 NA NA 0 0 4327 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000290 t29760 v22w__v22x 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CTCAGCTCGCATGTTGTCTC 0 0 TAGATCAGCCTGCCAACCAA 0 0 NA NA 0 0 3949 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000291 t29760 v09Z__v10A 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTTGGTGCGTACCACTTACATC 0 0 ATCTATGCCAAGTCACGCTTCT 0 0 NA NA 0 0 3379 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000292 t29760 v16O__v16P 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CCAGAGCAGCACATTCGTTT 0 0 CCGTTCACCCTAGTCGTTCT 0 0 NA NA 0 0 5218 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000293 t29760 v09V__v09W 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGGGCATGACTAAATACATTCG 0 0 CCTCAAAGGACCCTTCTCATAA 0 0 NA NA 0 0 5465 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000294 t29760 v10H__v10I 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CATGCATGTGTTTGGTAACTGA 0 0 ATTGCGTATTCTCAATTCTGGC 0 0 NA NA 0 0 4266 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000295 t29760 v10D__v10E 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGTAGGGAGGATTAGGACGTTT 0 0 CCCACCTCTCTCTCAATCAAAA 0 0 NA NA 0 0 6798 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000296 t29760 v16Q__v16R 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AGAGAAGCTGACCCAAGACC 0 0 ATGGGCACAAAGGTCCTACA 0 0 NA NA 0 0 5131 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000297 t29760 v234__v235 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AGCTTCTGATCACCATGCCT 0 0 AAAATGCGGGGTCCACAATC 0 0 NA NA 0 0 / NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000298 t29760 v10T__v10U 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGATCTAACTCTTGCTAGAGACCCT 0 0 AGTCTGGTTGCTTGAGAATGGT 0 0 NA NA 0 0 5768 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000299 t29760 v17A__v17B 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GAGGAGTCAGAGGCGTAGAC 0 0 TGCCCTCTTTGCTGTTCATG 0 0 NA NA 0 0 5563 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000300 t29760 v10Z__V11A 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AAGTCATCCAAAAGGACCTTGA 0 0 AAACCATTACCTTGAGCCCTCT 0 0 NA NA 0 0 6267 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000301 t29760 v17E__v17F 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TCGACGGAGAATCAGGACTG 0 0 ACCGTGACTTGACAAGACCA 0 0 NA NA 0 0 6044 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000302 t29760 V11F__v06Z 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100499 GGTTTTGTTGTATGGGTAGGGA 889325 889347 GAGTCCGCTCTGCAGTAAATAGT 890787 890766 NA NA 0 0 1485 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000303 t29760 V11H__V11I 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTACAACAACAATCTGTGTGGCT 0 0 AATTTTAACGCCACCCCAAG 0 0 NA NA 0 0 5726 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000304 t29760 V11P__V11Q 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ATGAATGAAAGCTTCGGGTCT 0 0 AAGCTTTAAGATCACGCTTCAAA 0 0 NA NA 0 0 6100 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000305 t29760 V11R__V11S 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GAAAGCTTTGAAGCGTGATCTT 0 0 TCATATGAGGCCACACATATCAG 0 0 NA NA 0 0 6164 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000306 t29760 v07X__v07Y 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTACAAATGGGACATGGCATAA 0 0 GCAATAGGTCTGATTTGGTTCAG 0 0 NA NA 0 0 5878 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000307 t29760 v08B__v08C 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGAAAATTAGTATTATGCAAAAGCAA 0 0 GTATCAAAAGCCACCTGCCTAC 0 0 NA NA 0 0 5152 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000308 t29760 v238__v239 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTGGTCTTCAGGCCATGGAT 0 0 CCATTCCCTCACCACCTCTT 0 0 NA NA 0 0 5147 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000309 t29760 v23z__v231 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AATGAACGGCCTTGGCTTTT 0 0 AGCTGACCTCATTTGCCTCT 0 0 NA NA 0 0 2020 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000310 t29760 v21p__v21q 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGTTTGAAGGGCTGTGTGTT 0 0 GCTCATGCCAATTCTAGGCC 0 0 NA NA 0 0 6501 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000311 t29760 v21r__v21s 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ATGCATGGCCTAGAATTGGC 0 0 CATGGATGCAAGTCAACAGTT 0 0 NA NA 0 0 6602 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000312 t29760 v14J__v14K 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGGGAACAATAGCAATAGCAAA 0 0 TACCTGTTCAGGCTGTGATCTG 0 0 NA NA 0 0 4004 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000313 t29760 v19j__v19k 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CGCAGAGGGTGTTGATCATG 0 0 AGGATGGAGCAGTTATGGGG 0 0 NA NA 0 0 2311 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000314 t29760 v18s__v18t 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CGCTCGGACGATTGAATCAG 0 0 ACTCAACTCAGTCCAACCTCA 0 0 NA NA 0 0 4025 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000315 t29760 v18u__v18v 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGAGGTTGGACTGAGTTGAGT 0 0 GGAAGCATGTGTCACGGAAG 0 0 NA NA 0 0 6924 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000316 t29760 v18w__v18x 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CTTCCGTGACACATGCTTCC 0 0 CCATCACAACCAAAGGCACA 0 0 NA NA 0 0 4664 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000317 t29760 v18y__v18z 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ACCCCTCAGCTAGTTGTTGT 0 0 CAATATAGCGGTGTGTGGCC 0 0 NA NA 0 0 4591 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000318 t29760 v181__v182 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TAACGCCTCCACAGTTCCTT 0 0 AAGTGGAACTGGAGCCTACC 0 0 NA NA 0 0 7955 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000319 t29760 v19r__v19s 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_4897 GGGAGAATGGGTGATTTGAGAC 861143 861162 CCCAATTTACGGCCCCAATT 862872 862851 NA NA 0 0 1733 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000320 t29760 v19t__v19u 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AAAGTTCGTGGGGAGGGAAA 0 0 TGAGTTACAGTTGCCAGGCT 0 0 NA NA 0 0 2165 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000321 t29760 v21d__v21b 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CATATCCCCACCCCAATCCT 0 0 CGCCTCCAATAAGACCCAGA 0 0 NA NA 0 0 4385 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000322 t29760 v21g__v21h 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CTGTGGTGTCCTGGCCTT 0 0 CTGGGAAGATTTGTGGTGGG 0 0 NA NA 0 0 5340 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000323 t29760 v21k__v21c 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ACGTGGAGAGACATAGGCAC 0 0 TGTGCGGGAATAGGAAGGTT 0 0 NA NA 0 0 5041 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000324 t29760 v183__v184 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGCTAACTGTACGGAAAGCG 0 0 TGGTAGTTTTGGCTCCCGAT 0 0 NA NA 0 0 7672 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000325 t29760 v185__v186 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CTAGCATCGGGAGCCAAAAC 0 0 GATGGTGAGGGGTGACAAGA 0 0 NA NA 0 0 4401 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000326 t29760 v187__v188 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TCTTGTCACCCCTCACCATC 0 0 CCACCCCAAGAGCAGAGTAA 0 0 NA NA 0 0 5312 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000327 t29760 v20k__v20l 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CCATCTGAGGCCCAATCTGA 0 0 AAAGAGCGCGACCCAAATTT 0 0 NA NA 0 0 3416 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000328 t29760 v20g__v20h 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_62 CGTGTTCTTCCAAAGCCCTC 1087795 1087814 CACAGGTCGCTGAAATGGTT 1089833 1089814 NA NA 0 0 2038 NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000329 t29760 GAVBInd_009 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_64 GAAGGACCTACTCTTGATTGAAGG 856258 856281 GGCATGCTTGGAAAAGATGT 856405 856386 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000330 t29760 GAVBInd_010 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_64 AAGCCCTCCCAAGACAAAAT 858870 858889 TGGGCCTCTCTCTGTTTCAG 859102 859083 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000331 t29760 GAVBInd_001 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGATTATTAGAGCATTTTTGTGTGTG 0 0 AACCTAGGGTTCTGCATTCG 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000332 t29760 GAVBInd_004 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000027F_001_arrow_pilon_ TGCAATCTATCAACATAGTTCTGTAA 136044 136065 TGAGACCACAACTGCATAATCC 136240 136215 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000333 t29760 GAVBInd_004 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000027F_001_arrow_pilon_ TGCAATCTATCAACATAGTTCTGTAA 136044 136065 TGAGACCACAACTGCATAATCC 136240 136215 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000334 t29760 GAVBInd_005 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000027F_001_arrow_pilon_ GATGGATTGCTTCCCTGAAA 135622 135644 TCACACTCTGCTCTTCTCACTTG 135736 135717 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000335 t29760 GAVBInd_019 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_992 CTGCTTGCAGTTGAATTCATGT 145455 145476 CACAGTCTTGAATGCGCCTT 145670 145651 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000336 t29760 GAVBInd_019 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_992 CTGCTTGCAGTTGAATTCATGT 145455 145476 CACAGTCTTGAATGCGCCTT 145670 145651 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000337 t29760 GAVBInd_007 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_89 GGGAGAGTTGTTGTGATTCCA 78320 78339 TCAAAGAAAACGCGACAAAA 78681 78661 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000338 t29760 GAVBInd_014 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGGAGGTCAATTCTTTACTGACA 0 0 CCCCATTCCCCATTTCTCTA 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000339 t29760 GAVBInd_014 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGGAGGTCAATTCTTTACTGACA 0 0 CCCCATTCCCCATTTCTCTA 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000340 t29760 GAVBInd_015 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100272 GTTGTCCCAGATGGGAACTG 139386 139405 CTGGAGGCGTATCTGATGGT 139591 139572 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000341 t29760 GAVBInd_016 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_936 TGAAGCCATGTAAACTGATCATAA 944566 944589 ATTCACACCCCATCACTTCA 944839 944820 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000342 t29760 GAVBInd_017 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_936 GAAATAGAAGCCGCAAGGTC 942599 942618 GCTTTGTCATATGCCCTGAA 942737 942718 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000343 t29760 GAVBInd_018 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGCAGGAAGCTGAAACACAC 0 0 TGGAATGAGAGAGCAAACACC 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000344 t29760 GAVBInd_006 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000073F_010_arrow_pilon_ TTCACATGCAAATTCCAACG 49414 49433 CATTCTACAGTGCCCAGTGC 49649 49630 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000345 t29760 GAVBInd_012 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100001 TCTCATCCCTGGGAATCTTG 876812 876831 TGAAAAAGCAGCCTGTACCA 876993 876974 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000346 t29760 GAVBInd_013 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GAGCACTACTCCAGCCCAAG 0 0 TCCACACTCTTCCCACCAAT 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000347 t29760 GAVBInd_020 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100499 CATTGCCTCTCCTAGTGCCT 173280 173299 ATCCATCGACCAGTTTCCCT 173715 173696 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000348 t29760 GAVBInd_008 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GAGCAGTTGCGGCATACTAA 0 0 CAAATTACACTATACCTCGCCTAGA 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0214703 31269026 1 Alternative_haplotypes_polished_genome t29760.P0000349 t29760 RUN1MG 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ATAAAGCTCTTCGTATAAAT 0 0 CGATATGTGCTGACCCACA 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2017.00758 28553300 1 Alternative_haplotypes_polished_genome t29760.P0000350 t29760 VvCalS1 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_150 CAAAGGTGGAAAATCAAAGC 280629 280648 AGGCAGACGAAAGAAATCAG 280838 280819 NA NA 0 0 NA NA NA 10.3389/fpls.2017.00758 28553300 1 Alternative_haplotypes_polished_genome t29760.P0000351 t29760 VvWRKY27 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000004F_026_arrow_pilon_ GACTTTGTGCTTGGGTGTCT 583389 583408 TGGGGGTTTTCTACATTTCT 583506 583487 NA NA 0 0 NA NA NA 10.3389/fpls.2017.00758 28553300 1 Alternative_haplotypes_polished_genome t29760.P0000352 t29760 VvPR5 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000012F_033_arrow_pilon_ CTCAGGATGACAAAACCAG 55770 55789 CACCAAGAAAGTGAAGGAAA 55874 55856 NA NA 0 0 NA NA NA 10.3389/fpls.2017.00758 28553300 1 Alternative_haplotypes_polished_genome t29760.P0000353 t29760 VvSTS36 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_284 CTTGAAGGGGGAAAATGCT 5878715 5878733 TTACTGCATTGAAGGGTAAACC 5878874 5878853 NA NA 0 0 NA NA NA 10.3389/fpls.2017.00758 28553300 1 Alternative_haplotypes_polished_genome t29760.P0000354 t29760 MrRUN1 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CCTGAAGCGGAAATTCTCAG 0 0 TGCATGGAAATCACAAGCATCT 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2017.00758 28553300 1 Alternative_haplotypes_polished_genome t29760.P0000355 t29760 VvPEN1 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CTTCGCAAGAAGCTCAGGGA 0 0 TGCTCTTGGATCGCCTTCTG 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2017.00758 28553300 1 Alternative_haplotypes_polished_genome t29760.P0000356 t29760 Vv60SRP 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ATCTACCTCAAGCTCCTAGTC 0 0 CAATCTTGTCCTCCTTTCCT 0 0 NA NA 0 0 NA NA NA 10.3389/fpls.2017.00758 28553300 1 Alternative_haplotypes_polished_genome t29760.P0000357 t29760 chr1_1423017 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGCCTGGTTATTCCAGCGTAA 0 0 TAGTGGTCCGGATGCCTGTA 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000358 t29760 chr1_8486612 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTAGTCGTGGTGTTGTGGCA 0 0 AGAGAAAAGCAGCAGGGCAG 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000359 t29760 chr10_1443943 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000026F_011_arrow_pilon_ AACCATTAGAGCCGGCGAAA 303598 303617 TAGAACCGCGACGAATCGAG 303949 303931 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000360 t29760 chr10_621423 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100243 CGCTCTGACTGGGACGAAG 542386 542404 TGTGTGCGCATGTTATTGGG 542706 542687 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000361 t29760 chr10_6806666 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGCGTAATGCGGGTACTCAA 0 0 TCTCGTGGCGTAGCAATGAT 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000362 t29760 chr11_12294392 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100098 GTCATGGATCGTACCCCGTC 261963 261982 TGATCGTATAAGCGCAGTCAA 262403 262383 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000363 t29760 chr11_2421710 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGAGGACTGAAGCACCCACT 0 0 GGGTCCTGGCAAAACCAAAC 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000364 t29760 chr11_4729126 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_255 AACTACGGTGTGCCTGATGG 3458748 3458767 AACAAGGCAAGGAGTGGAGG 3459213 3459194 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000365 t29760 chr12_17167728 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TCCTGACGCATGCGAATGAT 0 0 CACAGCTGTGTATGGCAACCT 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000366 t29760 chr12_2651137 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100075 AATGGCGAACACCTTGATGC 1308785 1308804 TTAATGCGCTGTGCTGGAGT 1309302 1309283 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000367 t29760 chr12_8469129 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CAAAGAACCTGCTTCCCAGTGCCTT 0 0 CTTCTTTCCCCTAGCATAGGCCAC 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000368 t29760 chr13_2218876 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTGCCTCCTTTGCGATGTAGTTAGT 0 0 CCACTTGCTCTATTGTGGGTGCAATA 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000369 t29760 chr13_4743584 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000004F_007_arrow_pilon_ GCATACAGGGGTTGCTCAGT 18776 18795 TTCACGGGCATTTCAGGACA 19321 19302 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000370 t29760 chr13_8147976 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_156 AGCAAACAATAGGTAGTCAACTCTT 648659 648683 CCATGTCAACACCCCACTCA 649434 649415 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000371 t29760 chr14_12909066 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000073F_006_arrow_pilon_ TCGTGGTTGTGTCGGTTCTT 69039 69058 CCTTAGGGAATGTCTCCCCC 69540 69521 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000372 t29760 chr14_18305540 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ATATCTGGGTCTCCGGCCTT 0 0 ATGCCATTCAGACTGTCGGT 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000373 t29760 chr15_17194647 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_148 ACGGACATACGCACTTTCCA 1471382 1471401 AGTGAGAGGACAAAAGGCCCATC 1471904 1471882 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000374 t29760 chr15_2617390 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TAGACCCAACTGCGACACAC 0 0 CGGTTACTTGGGGAACTGGT 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000375 t29760 chr15_6930713 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000163F_003_arrow_pilon_ TTGTCTCGTGCGCTCTCTTT 52742 52761 TGGGCATTGGACAAGGGTAT 53265 53246 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000376 t29760 chr16_1382244 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000196F_011_arrow_pilon_ TGGAGCATGTTAGTGTCGCC 24268 24287 ATCCCCGGCTAATTGCCCTA 24956 24937 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000377 t29760 chr16_18620823 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_284 GAACTCTTTGCTACCGCCCA 3713053 3713072 CCGGCTAGGAGGAGATGGTA 3713470 3713451 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000378 t29760 chr16_8402634 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CCAAGAACCGAGTGACCGTT 0 0 TGTCCATGGGCGTGAGCTTATC 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000379 t29760 chr17_3071228 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGTGTCGTTGAATAAAAATGCAAGT 0 0 TATCCGCCTTCCTGGGAGAA 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000380 t29760 chr17_7399253 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTGCCCAGACAGTAAGTGGG 0 0 CTCATTGGCAGGCCGTTAAA 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000381 t29760 chr17_9271391 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_4897 TGTTGGCGTAGCATCAGAGG 399145 399164 CCGTCATATACGTGGACCGAA 399410 399390 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000382 t29760 chr18_12802252 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_5649 CCTCATGGTCTCCGTTTCCA 211152 211172 CCCTATTGAGTGAGCTCGCAG 211586 211567 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000383 t29760 chr18_5027894 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CGAGACGGGAGAGGTGACTA 0 0 AGATACCACCGCGTGTACCA 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000384 t29760 chr19_17118533 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100227 TTCTAAGGTGGCTACCGTGC 126817 126836 AGACCACAGAAGTGGAGCAT 127484 127465 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000385 t29760 chr19_1955035 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100399 TGGGGAGGTATTATGCAGGAC 504090 504109 AGCCTCTTTGCATGGGTGAT 504477 504457 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000386 t29760 chr19_3077359 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_208 ACGGTAAACTATAGGCTCGATCA 433450 433472 GCGGCTAGGAGGAAGAGAAG 433977 433958 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000387 t29760 chr2_1835558 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000012F_014_arrow_pilon_ GGAGGCTTTCCCCTAGACCT 891103 891126 GAATCAATCAGCAGGTGAGCTTTC 891586 891567 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000388 t29760 chr2_3886373 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GATGGCAACAGGACATCCGAAAC 0 0 ATTTATCGGCCCGCTGTTTG 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000389 t29760 chr3_1699908 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_867 ATCCAAATACATACATGTTGCCTCTATT 1619658 1619685 TGACGCGTGAAATACTTACCT 1620303 1620283 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000390 t29760 chr3_4048269 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GTTATCGCCAGGCCAGTATTTGTT 0 0 GGCACTCGAAAGTTTCAGCATTA 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000391 t29760 chr3_7176087 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_93 TTGCAGGTCCTTTCCACCAC 781010 781029 TGTTCATCCACCATAGTGTGCCA 781467 781445 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000392 t29760 chr4_13542467 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_60 GTTCAGGCATCTCGTGCTCT 3243736 3243758 GTTCCACAGATCCTCTTCCCTCA 3244355 3244336 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000393 t29760 chr4_2193603 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000016F_016_arrow_pilon_ TTTCTCGGGTTTTGGTCGGT 285931 285950 TGTTGTGAGACTGCCTGCATT 286627 286607 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000394 t29760 chr4_7576557 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_1453 AGGGTATTTCCGCAAGGCAA 3180354 3180376 GGTCTGGTGTTGCCTCAAACTAA 3181355 3181336 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000395 t29760 chr5_11155206 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AATCCCCCTAAATCGGGCTC 0 0 ACTAACGCTTTCAACACTCGCAT 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000396 t29760 chr5_6620367 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTCTACAAGGACGACGGTGG 0 0 AGGCTTTAGGACCGTTTTGGA 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000397 t29760 chr6_12372017 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TTATAGGGCCACGACGGGTA 0 0 TCATGCCTTGCTTTTAGGGCATAA 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000398 t29760 chr6_5938617 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CATGACTCGGTGTCGGTCTC 0 0 GGCTCTCGATGTTTCGACCA 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000399 t29760 chr7_3904192 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000001F_016_arrow_pilon_ ATGACGTGCGTGCTTCTCTA 973303 973322 TGGCTAGAAGCTAGGACCGA 973864 973845 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000400 t29760 chr7_9124873 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_497 ATCTCACGATAATGGGGGTCCTTGT 2970803 2970823 ACAAGCATTGGACCCCAAGAG 2971364 2971340 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000401 t29760 chr8_15626333 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000064F_010_arrow_pilon_ TGGTTAGTGTGACTGCCACC 699656 699675 GGCCAACCAGTCATTTGCTA 700179 700160 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000402 t29760 chr8_18569640 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGGCGCAATCAGTTACACCATTTCA 0 0 CTCACGTGGTCAGAGCAGC 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000403 t29760 chr8_3998645 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GAACCCAACCGTGTCCGATT 0 0 GTGTTATGCTCGGCTGACTG 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000404 t29760 chr9_1286785 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000104F_005_arrow_pilon_ GGCTTGGTATGAGCCCAACA 68644 68669 TTCTAGTCGGTGATTTTAGTCACAAT 69324 69305 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000405 t29760 chr9_13882325 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_1 ATACACCCGACGCAATCCAG 1302728 1302749 GACGACATGACTCCTAGCTACC 1303226 1303207 NA NA 0 0 NA NA NA 10.1371/journal.pone.0170655 28125640 1 Alternative_haplotypes_polished_genome t29760.P0000406 t29760 MrRUN1 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ATAAAGCTCTTCGTATAAAT 0 0 CGATATGTGCTGACCCACA 0 0 NA NA 0 0 190 NA NA 10.3389/fpls.2017.00758 28553300 1 Alternative_haplotypes_polished_genome t29760.P0000407 t29760 CHI 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TATCCCCAAGATGTCTCCA 0 0 AAAGTGTCCCGGATGTTAC 0 0 NA NA 0 0 1725 NA NA 10.1021/acs.jafc.5b03463 26422991 1 Alternative_haplotypes_polished_genome t29760.P0000408 t29760 UFGT 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100048 ATGTCTCAAACCACCACCAAC 1540341 1540361 CCGGGAAACCTTTATTTTCA 1541840 1541821 NA NA 0 0 1500 NA NA 10.1021/acs.jafc.5b03463 26422991 1 Alternative_haplotypes_polished_genome t29760.P0000409 t29760 UFGT 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100048 GCAATGTAATATCAAGTCC 1540520 1540538 TTTCTTTCTTTGAGCCATT 1541223 1541205 NA NA 0 0 704 NA NA 10.1021/acs.jafc.5b03463 26422991 1 Alternative_haplotypes_polished_genome t29760.P0000410 t29760 VV:18:11239810 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_5649 CATAGACAGCCTACATCCATCTC 1618166 1618185 TCATTTTCATCTGCCTCGTC 1618339 1618317 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000411 t29760 VV:2:141291 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000012F_008_arrow_pilon_ GAAACAAAGGAGCAAGACAACC 504179 504200 GTTGATGATGGAAGAGAGGCAC 504340 504319 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000412 t29760 VV:1:7802183 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000002F_028_arrow_pilon_ AGAACAGCTCTTACAACAGCAC 144888 144909 TTCATTGATCCTTTCAGCAG 145026 145007 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000413 t29760 VV:1:13794046 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_3212 TGTACAGTCGCTGCAGCTTG 586312 586331 AATCAACCTAAAATCCCTCTTCCTC 586469 586445 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000414 t29760 VV:14:19163590 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000108F_005_arrow_pilon_ GTTAAGGCGGGAGAGATGAATG 70588 70609 CACGGAACCAAGTTCTTGACAG 70751 70730 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000415 t29760 VV:16:6890855 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GCAAACTGCAAGAGACGAG 0 0 TAAGAAGAAGTCCGGTTCAAG 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000416 t29760 VV:7:1898848 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TCGCTCCTCAATGCCCTAAC 0 0 AACAAGGCCGAGAGACATCAAG 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000417 t29760 VV:5:133260 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000177F_006_arrow_pilon_ TTTGCCGGTGCGTATATGAG 431637 431658 TTGAGAGCCTTCCCTACGTTTG 431796 431777 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000418 t29760 VV:6:3792284 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000017F_006_arrow_pilon_ CCCAGTTCCAAACTGTGAGC 677086 677105 GGTAAACTGCAAGCTGGTTGTC 677256 677235 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000419 t29760 VV:6:664571 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000098F_008_arrow_pilon_ TGATTGTAATGCAAGCTGCTG 664292 664312 TAGGTTCTATGTGCGGGTAAGG 664444 664423 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000420 t29760 VV:5:3864908 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000019F_005_arrow_pilon_ AGCACTCCGTAGGCATATACATC 31886 31908 GCACTTTCGGGTTTGTAGACTC 32061 32040 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000421 t29760 VV:19:1245768 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100716 TGCGCCCTCTTCACATTACTC 241659 241678 ACAGGCTTCTCGGCAAGTTC 241827 241807 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000422 t29760 VV:5:3864833 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GCAACCTACCCACATCACAAG 0 0 TTGTAACAGCTACCTTCCTCCTG 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000423 t29760 VV:12:9066350 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100531 CAGAGGTTGCGCCATAG 869507 869523 TTAGATGAAAGGGCTGTGTTAC 869653 869632 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000424 t29760 VV:4:2322806 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000016F_016_arrow_pilon_ CACATGCAATCACACGGAAG 416850 416869 GACGCTCTCACTCATCATCTCTTAC 417030 417006 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000425 t29760 VV:3:1013821 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_867 TGTGTTAAACCCAGACCGTCTAC 972344 972366 CCAAGGCCTTTGACTATGGAG 972517 972497 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000426 t29760 VV:17:7157963 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GTTGAACCTAACACAAACCAACC 0 0 GCAATCCTGAGATGCAGTTG 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000427 t29760 VV:14:717049 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_3128 TCGTACTTCTCTCCGAGGTG 153419 153438 AAGCAGAGCATGGAGATCAG 153549 153530 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000428 t29760 VV:17:5140114 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000000F_028_arrow_pilon_ GCGAGTTGATGGGTGAG 9362 9378 AACACTTCTGAATCCCATGAC 9478 9458 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000429 t29760 VV:11:3842444 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000003F_027_arrow_pilon_ GTGCTCAGTCTTAGGTCGAATC 175678 175699 AAGTTGTTGGACGAAAGATCC 175847 175827 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000430 t29760 VV:6:6045443 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGCACCAGTACCAGAGTTATG 0 0 ACACGTGTATGCGTTTGC 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000431 t29760 VV:8:10679565 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AAAAGAGCTCGAAACAGTCC 0 0 CCTTGCCAACAAACGTG 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000432 t29760 VV:17:7429913 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TCCATGCTTGTACCACTGATAGG 0 0 ATGAGAAGTCCGGTGGATAAGAC 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000433 t29760 VV:2:2391182 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000012F_014_arrow_pilon_ AAGAATAATGACCATGGCAGGAG 265268 265289 CCGGGCTCCTATTAGTTTTCTG 265421 265399 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000434 t29760 VV:17:6230861 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GCATTCTCAACCGGTCGTATC 0 0 CGGGCTTCCTGTACATATTCTTG 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000435 t29760 VV:8:16105442 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000123F_010_arrow_pilon_ GCGAAGCATCAAAGACAACAAG 1155950 1155974 TGAGAGTGAGGGAGAAGTTGAAGAG 1156119 1156098 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000436 t29760 VV:18:9582805 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Pc000358F_arrow_pilon_obj CCCTGGAGTTTCATTTGCAC 511601 511620 AGTTCAGGCGTGGAGTCAAG 511770 511751 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000437 t29760 VV:4:1185523 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA ATTTTGGTGGCATTCTGGTCAC 0 0 TTGCTAGAACCTTGAAGCAGAGC 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000438 t29760 VV:7:7179779 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GTCTATGCTGCCTTGCTGAGATG 0 0 TCAAGAGGAAGGAGAAGGGGAAG 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000439 t29760 VV:3:2212120 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TCGAGCAGGTCATGGAG 0 0 CAAACACACCTTGTTCTTGTG 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000440 t29760 VV:12:2314340 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CAGCAAACAAGGACTCTTCCTC 0 0 TTGGCGGTGATTCCTTACTC 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000441 t29760 VV:3863:5855571 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_216 GTGGGAAGGTCTTTGAAGCTC 3987 4007 CGGCCAATTCTTTACCACTTC 4142 4122 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000442 t29760 VV:4:14009350 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GAACCCAGACTCCTGAAATTTGTC 0 0 TCTGGCAGTGATGAAGAAGTTCC 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000443 t29760 VV:3861:1900606 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000011F_002_arrow_pilon_ GGATATGAGGTACATGGGACTG 193455 193479 TTGGTATCGTGATGAAGTTAGAGAG 193612 193591 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000444 t29760 VV:5:19222526 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GCCTCTTCGCATACTTCACTGC 0 0 GGCGTCGAAGGATGATCTTG 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000445 t29760 VV:18:10764700 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Pc000089F_arrow_pilon_subs CGCAGAGGATGTCTGACAAGAG 271410 271431 GCCATTACTTCTCACTGTGCTCTG 271583 271560 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000446 t29760 VV:13:7670560 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA AGGAGGAGAGGGAAGTGGTC 0 0 CCATAATCCATATTCTCCTTCACTC 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000447 t29760 VV:7:2912469 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000033F_020_arrow_pilon_ GGTGGGAAATTTGCTGGTTG 433625 433644 TGTATGCATCTTCACCAGGAGTTG 433799 433776 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000448 t29760 VV:6:18163408 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100026 GGAGCATAAGGGGAAATTGTACG 1066208 1066230 CTCTCATCCTTGGAAATCACCAC 1066375 1066353 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000449 t29760 VV:3:8494448 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_5630 GCATATGACTGGGCATACTCCTG 177989 178011 TCATCAGTACTGGAAACCCTGGTC 178164 178141 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000450 t29760 VV:11:630969 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000003F_026_arrow_pilon_ GCAGCCAAACAGCAGAGACAG 123495 123515 GAATATCCGGTGGGGTTGAAG 123634 123614 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000451 t29760 VV:7:13901320 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA TGTCCTTCTGAGCCACGAAC 0 0 GGGAAATTCTCGCCATTGTC 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000452 t29760 VV:12:9945727 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_100531 TAAGACACAGGGACATTTTGAGG 1823317 1823339 AGGAGCCGGATAGTAACGAAG 1823451 1823431 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000453 t29760 VV:18:3490918 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA GGAGGCTGGGGATATTACTTGTG 0 0 TGGCCTTTGGATATTGTCTGC 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000454 t29760 VV:13:5989356 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000004F_031_arrow_pilon_ ATGTTGCTAAGAATGTAGCTGATGG 225276 225300 CCCGAGTATCCTTGAAGAAGTG 225433 225412 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000455 t29760 VV:9:6489555 1 Others t29760.G006 Alternative_haplotypes_polished_genome Super-Scaffold_5239 CCATTGAGGAAGAGTGCGTGATAC 467687 467710 CAACCTCGGCCAAAATACAAATTC 467818 467795 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000456 t29760 VV:5:3870043 1 Others t29760.G006 Alternative_haplotypes_polished_genome NA CACTGAAGGCCTATCATCAAAC 0 0 CTGGCATATCACATGGCTTC 0 0 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome t29760.P0000457 t29760 VV:1:2247329 1 Others t29760.G006 Alternative_haplotypes_polished_genome VvNeb_Hc000027F_012_arrow_pilon_ ATCTGCTCATGATCACCCTTC 406825 406846 GAGTTGTTTCCAGTGGTGTCTG 406991 406971 NA NA 0 0 NA NA NA 10.1371/journal.pone.0140841 26488600 1 Alternative_haplotypes_polished_genome