# Assembly Statistics Report # Assembly name: ValleyOak3.2 # Organism name: Quercus lobata (valley oak) # Isolate: SW786 # Taxid: 97700 # BioSample: SAMN10584531 # BioProject: PRJNA308314 # Submitter: University of Maryland Center for Environmental Science # Date: 2019-01-11 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: LRBV02 # Assembly method: MaSuRCA v. 3.2.1; Dovetail HiRise v. 1 # Expected final version: yes # Genome coverage: 280.0x # Sequencing technology: Illumina HiSeq; PacBio; Dovetail # RefSeq category: Representative Genome # GenBank assembly accession: GCA_001633185.5 # RefSeq assembly accession: GCF_001633185.2 # RefSeq assembly and GenBank assemblies identical: no # Reporting on RefSeq assembly. # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_001633195.3 GCF_001633195.2 Primary Assembly ## GCA_001633205.3 non-nuclear # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # gc-perc gc-count/atgc-count as percentage # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 845947251 all all all all spanned-gaps 1673 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 2002 all all all all scaffold-N50 66423012 all all all all scaffold-L50 5 all all all all scaffold-N75 55012092 all all all all scaffold-N90 49020089 all all all all contig-count 3675 all all all all contig-N50 965935 all all all all contig-L50 247 all all all all total-gap-length 1923068 all all all all molecule-count 12 all all all all top-level-count 2002 all all all all component-count 2002 all all all all gc-perc 35.5 Primary Assembly all all all total-length 845947251 Primary Assembly all all all ungapped-length 844024183 Primary Assembly all all all scaffold-count 2002 Primary Assembly all all all scaffold-N50 66423012 Primary Assembly all all all spanned-gaps 1673 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all all gc-perc 35.5 Primary Assembly all all assembled-molecule total-length 812740008 Primary Assembly all all assembled-molecule ungapped-length 811082709 Primary Assembly all all assembled-molecule scaffold-count 12 Primary Assembly all all assembled-molecule scaffold-N50 66423012 Primary Assembly all all assembled-molecule spanned-gaps 1551 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all assembled-molecule gc-perc 35.5 Primary Assembly all all unlocalized-scaffold total-length 141117 Primary Assembly all all unlocalized-scaffold ungapped-length 141117 Primary Assembly all all unlocalized-scaffold scaffold-count 1 Primary Assembly all all unlocalized-scaffold scaffold-N50 141117 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold gc-perc 35.5 Primary Assembly na na unplaced-scaffold total-length 33066126 Primary Assembly na na unplaced-scaffold ungapped-length 32800357 Primary Assembly na na unplaced-scaffold scaffold-count 1989 Primary Assembly na na unplaced-scaffold scaffold-N50 55822 Primary Assembly na na unplaced-scaffold spanned-gaps 122 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold gc-perc 35 Primary Assembly 1 Chromosome all total-length 55683757 Primary Assembly 1 Chromosome all ungapped-length 55605220 Primary Assembly 1 Chromosome all scaffold-count 1 Primary Assembly 1 Chromosome all scaffold-N50 55683757 Primary Assembly 1 Chromosome all spanned-gaps 77 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome all gc-perc 36 Primary Assembly 1 Chromosome assembled-molecule total-length 55683757 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 55605220 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 55683757 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 77 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule gc-perc 36 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 104577665 Primary Assembly 2 Chromosome all ungapped-length 104405228 Primary Assembly 2 Chromosome all scaffold-count 2 Primary Assembly 2 Chromosome all scaffold-N50 104436548 Primary Assembly 2 Chromosome all spanned-gaps 168 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome all gc-perc 35.5 Primary Assembly 2 Chromosome assembled-molecule total-length 104436548 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 104264111 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 104436548 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 168 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule gc-perc 35.5 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 141117 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 141117 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 1 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 141117 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold gc-perc 35.5 Primary Assembly 3 Chromosome all total-length 74551540 Primary Assembly 3 Chromosome all ungapped-length 74344002 Primary Assembly 3 Chromosome all scaffold-count 1 Primary Assembly 3 Chromosome all scaffold-N50 74551540 Primary Assembly 3 Chromosome all spanned-gaps 170 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome all gc-perc 35 Primary Assembly 3 Chromosome assembled-molecule total-length 74551540 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 74344002 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 74551540 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 170 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule gc-perc 35 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 97794414 Primary Assembly 4 Chromosome all ungapped-length 97588021 Primary Assembly 4 Chromosome all scaffold-count 1 Primary Assembly 4 Chromosome all scaffold-N50 97794414 Primary Assembly 4 Chromosome all spanned-gaps 191 Primary Assembly 4 Chromosome all unspanned-gaps 0 Primary Assembly 4 Chromosome all gc-perc 35 Primary Assembly 4 Chromosome assembled-molecule total-length 97794414 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 97588021 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 97794414 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 191 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule gc-perc 35 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 89479036 Primary Assembly 5 Chromosome all ungapped-length 89312553 Primary Assembly 5 Chromosome all scaffold-count 1 Primary Assembly 5 Chromosome all scaffold-N50 89479036 Primary Assembly 5 Chromosome all spanned-gaps 167 Primary Assembly 5 Chromosome all unspanned-gaps 0 Primary Assembly 5 Chromosome all gc-perc 35.5 Primary Assembly 5 Chromosome assembled-molecule total-length 89479036 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 89312553 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 89479036 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 167 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule gc-perc 35.5 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 54021141 Primary Assembly 6 Chromosome all ungapped-length 53926504 Primary Assembly 6 Chromosome all scaffold-count 1 Primary Assembly 6 Chromosome all scaffold-N50 54021141 Primary Assembly 6 Chromosome all spanned-gaps 87 Primary Assembly 6 Chromosome all unspanned-gaps 0 Primary Assembly 6 Chromosome all gc-perc 35.5 Primary Assembly 6 Chromosome assembled-molecule total-length 54021141 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 53926504 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 54021141 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 87 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule gc-perc 35.5 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 49020089 Primary Assembly 7 Chromosome all ungapped-length 48917140 Primary Assembly 7 Chromosome all scaffold-count 1 Primary Assembly 7 Chromosome all scaffold-N50 49020089 Primary Assembly 7 Chromosome all spanned-gaps 99 Primary Assembly 7 Chromosome all unspanned-gaps 0 Primary Assembly 7 Chromosome all gc-perc 35.5 Primary Assembly 7 Chromosome assembled-molecule total-length 49020089 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 48917140 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 49020089 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 99 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule gc-perc 35.5 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 8 Chromosome all total-length 65456833 Primary Assembly 8 Chromosome all ungapped-length 65300261 Primary Assembly 8 Chromosome all scaffold-count 1 Primary Assembly 8 Chromosome all scaffold-N50 65456833 Primary Assembly 8 Chromosome all spanned-gaps 144 Primary Assembly 8 Chromosome all unspanned-gaps 0 Primary Assembly 8 Chromosome all gc-perc 35.5 Primary Assembly 8 Chromosome assembled-molecule total-length 65456833 Primary Assembly 8 Chromosome assembled-molecule ungapped-length 65300261 Primary Assembly 8 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 8 Chromosome assembled-molecule scaffold-N50 65456833 Primary Assembly 8 Chromosome assembled-molecule spanned-gaps 144 Primary Assembly 8 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 8 Chromosome assembled-molecule gc-perc 35.5 Primary Assembly 8 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 8 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 9 Chromosome all total-length 55012092 Primary Assembly 9 Chromosome all ungapped-length 54891797 Primary Assembly 9 Chromosome all scaffold-count 1 Primary Assembly 9 Chromosome all scaffold-N50 55012092 Primary Assembly 9 Chromosome all spanned-gaps 118 Primary Assembly 9 Chromosome all unspanned-gaps 0 Primary Assembly 9 Chromosome all gc-perc 35 Primary Assembly 9 Chromosome assembled-molecule total-length 55012092 Primary Assembly 9 Chromosome assembled-molecule ungapped-length 54891797 Primary Assembly 9 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 9 Chromosome assembled-molecule scaffold-N50 55012092 Primary Assembly 9 Chromosome assembled-molecule spanned-gaps 118 Primary Assembly 9 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 9 Chromosome assembled-molecule gc-perc 35 Primary Assembly 9 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 9 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 10 Chromosome all total-length 66423012 Primary Assembly 10 Chromosome all ungapped-length 66269094 Primary Assembly 10 Chromosome all scaffold-count 1 Primary Assembly 10 Chromosome all scaffold-N50 66423012 Primary Assembly 10 Chromosome all spanned-gaps 140 Primary Assembly 10 Chromosome all unspanned-gaps 0 Primary Assembly 10 Chromosome all gc-perc 35.5 Primary Assembly 10 Chromosome assembled-molecule total-length 66423012 Primary Assembly 10 Chromosome assembled-molecule ungapped-length 66269094 Primary Assembly 10 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 10 Chromosome assembled-molecule scaffold-N50 66423012 Primary Assembly 10 Chromosome assembled-molecule spanned-gaps 140 Primary Assembly 10 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 10 Chromosome assembled-molecule gc-perc 35.5 Primary Assembly 10 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 10 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 11 Chromosome all total-length 57729484 Primary Assembly 11 Chromosome all ungapped-length 57609201 Primary Assembly 11 Chromosome all scaffold-count 1 Primary Assembly 11 Chromosome all scaffold-N50 57729484 Primary Assembly 11 Chromosome all spanned-gaps 111 Primary Assembly 11 Chromosome all unspanned-gaps 0 Primary Assembly 11 Chromosome all gc-perc 35 Primary Assembly 11 Chromosome assembled-molecule total-length 57729484 Primary Assembly 11 Chromosome assembled-molecule ungapped-length 57609201 Primary Assembly 11 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 11 Chromosome assembled-molecule scaffold-N50 57729484 Primary Assembly 11 Chromosome assembled-molecule spanned-gaps 111 Primary Assembly 11 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 11 Chromosome assembled-molecule gc-perc 35 Primary Assembly 11 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 11 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 11 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 12 Chromosome all total-length 43132062 Primary Assembly 12 Chromosome all ungapped-length 43054805 Primary Assembly 12 Chromosome all scaffold-count 1 Primary Assembly 12 Chromosome all scaffold-N50 43132062 Primary Assembly 12 Chromosome all spanned-gaps 79 Primary Assembly 12 Chromosome all unspanned-gaps 0 Primary Assembly 12 Chromosome all gc-perc 35.5 Primary Assembly 12 Chromosome assembled-molecule total-length 43132062 Primary Assembly 12 Chromosome assembled-molecule ungapped-length 43054805 Primary Assembly 12 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 12 Chromosome assembled-molecule scaffold-N50 43132062 Primary Assembly 12 Chromosome assembled-molecule spanned-gaps 79 Primary Assembly 12 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 12 Chromosome assembled-molecule gc-perc 35.5 Primary Assembly 12 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 12 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 12 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 12 Chromosome unlocalized-scaffold unspanned-gaps 0