# Assembly Statistics Report # Assembly name: v 1.0 # Organism name: Chlorella variabilis (green algae) # Infraspecific name: strain=NC64A # Taxid: 554065 # BioSample: SAMN02744065 # BioProject: PRJNA45853 # Submitter: JGI # Date: 2010-09-16 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: ADIC01 # Assembly method: JAZZ v. May 25, 2007 # Genome coverage: 8.9x # Sequencing technology: Sanger # RefSeq category: Representative Genome # GenBank assembly accession: GCA_000147415.1 # RefSeq assembly accession: GCF_000147415.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000147425.1 GCF_000147425.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # gc-perc gc-count/atgc-count as percentage # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 46159512 all all all all spanned-gaps 3396 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 414 all all all all scaffold-N50 1469606 all all all all scaffold-L50 12 all all all all scaffold-N75 953202 all all all all scaffold-N90 415506 all all all all contig-count 3810 all all all all contig-N50 27941 all all all all contig-L50 432 all all all all total-gap-length 3944955 all all all all molecule-count 0 all all all all top-level-count 414 all all all all component-count 3810 all all all all gc-perc 67 Primary Assembly all all all total-length 46159512 Primary Assembly all all all ungapped-length 42214557 Primary Assembly all all all scaffold-count 414 Primary Assembly all all all scaffold-N50 1469606 Primary Assembly all all all spanned-gaps 3396 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all all gc-perc 67 Primary Assembly all all assembled-molecule total-length 0 Primary Assembly all all assembled-molecule ungapped-length 0 Primary Assembly all all assembled-molecule scaffold-count 0 Primary Assembly all all assembled-molecule scaffold-N50 0 Primary Assembly all all assembled-molecule spanned-gaps 0 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 46159512 Primary Assembly na na unplaced-scaffold ungapped-length 42214557 Primary Assembly na na unplaced-scaffold scaffold-count 414 Primary Assembly na na unplaced-scaffold scaffold-N50 1469606 Primary Assembly na na unplaced-scaffold spanned-gaps 3396 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold gc-perc 67