# Assembly Statistics Report # Assembly name: Walnut 2.0 # Organism name: Juglans regia (English walnut) # Infraspecific name: cultivar=Chandler # Taxid: 51240 # BioSample: SAMN03704235 # BioProject: PRJNA291087 # Submitter: Johns Hopkins University # Date: 2020-07-08 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: LIHL02 # Assembly method: MaSuRCA v. 3.2.1; HiRise v. 2018-04 # Expected final version: no # Genome coverage: 155.0x # Sequencing technology: Illumina HiSeq; Oxford Nanopore MinION; Illumina NovaSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_001411555.2 # RefSeq assembly accession: GCF_001411555.2 # RefSeq assembly and GenBank assemblies identical: no # Reporting on RefSeq assembly. # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_001411565.2 GCF_001411565.2 Primary Assembly ## GCA_001411575.2 GCF_013706355.1 non-nuclear # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 572946670 all all all all spanned-gaps 1051 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all contig-count 25808 all all all all contig-N50 1072962 all all all all contig-L50 146 all all all all total-gap-length 603869 all all all all molecule-count 17 all all all all top-level-count 24757 all all all all component-count 24757 Primary Assembly all all all total-length 572786133 Primary Assembly all all all ungapped-length 572182264 Primary Assembly all all all spanned-gaps 1051 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all assembled-molecule total-length 545778456 Primary Assembly all all assembled-molecule ungapped-length 545196808 Primary Assembly all all assembled-molecule spanned-gaps 1031 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 27007677 Primary Assembly na na unplaced-scaffold ungapped-length 26985456 Primary Assembly na na unplaced-scaffold spanned-gaps 20 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly 1 Chromosome all total-length 45207397 Primary Assembly 1 Chromosome all ungapped-length 45193197 Primary Assembly 1 Chromosome all spanned-gaps 74 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule total-length 45207397 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 45193197 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 74 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 37821870 Primary Assembly 2 Chromosome all ungapped-length 37813329 Primary Assembly 2 Chromosome all spanned-gaps 63 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule total-length 37821870 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 37813329 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 63 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 35064427 Primary Assembly 3 Chromosome all ungapped-length 35049872 Primary Assembly 3 Chromosome all spanned-gaps 68 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule total-length 35064427 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 35049872 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 68 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 34823025 Primary Assembly 4 Chromosome all ungapped-length 34714513 Primary Assembly 4 Chromosome all spanned-gaps 68 Primary Assembly 4 Chromosome all unspanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule total-length 34823025 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 34714513 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 68 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 22562875 Primary Assembly 5 Chromosome all ungapped-length 22556952 Primary Assembly 5 Chromosome all spanned-gaps 46 Primary Assembly 5 Chromosome all unspanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule total-length 22562875 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 22556952 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 46 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 39020271 Primary Assembly 6 Chromosome all ungapped-length 38992049 Primary Assembly 6 Chromosome all spanned-gaps 96 Primary Assembly 6 Chromosome all unspanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule total-length 39020271 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 38992049 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 96 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 52418484 Primary Assembly 7 Chromosome all ungapped-length 52205569 Primary Assembly 7 Chromosome all spanned-gaps 99 Primary Assembly 7 Chromosome all unspanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule total-length 52418484 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 52205569 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 99 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 8 Chromosome all total-length 30564197 Primary Assembly 8 Chromosome all ungapped-length 30550778 Primary Assembly 8 Chromosome all spanned-gaps 72 Primary Assembly 8 Chromosome all unspanned-gaps 0 Primary Assembly 8 Chromosome assembled-molecule total-length 30564197 Primary Assembly 8 Chromosome assembled-molecule ungapped-length 30550778 Primary Assembly 8 Chromosome assembled-molecule spanned-gaps 72 Primary Assembly 8 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 9 Chromosome all total-length 24263475 Primary Assembly 9 Chromosome all ungapped-length 24256786 Primary Assembly 9 Chromosome all spanned-gaps 45 Primary Assembly 9 Chromosome all unspanned-gaps 0 Primary Assembly 9 Chromosome assembled-molecule total-length 24263475 Primary Assembly 9 Chromosome assembled-molecule ungapped-length 24256786 Primary Assembly 9 Chromosome assembled-molecule spanned-gaps 45 Primary Assembly 9 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 10 Chromosome all total-length 37707155 Primary Assembly 10 Chromosome all ungapped-length 37689475 Primary Assembly 10 Chromosome all spanned-gaps 97 Primary Assembly 10 Chromosome all unspanned-gaps 0 Primary Assembly 10 Chromosome assembled-molecule total-length 37707155 Primary Assembly 10 Chromosome assembled-molecule ungapped-length 37689475 Primary Assembly 10 Chromosome assembled-molecule spanned-gaps 97 Primary Assembly 10 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 11 Chromosome all total-length 37114715 Primary Assembly 11 Chromosome all ungapped-length 37007675 Primary Assembly 11 Chromosome all spanned-gaps 55 Primary Assembly 11 Chromosome all unspanned-gaps 0 Primary Assembly 11 Chromosome assembled-molecule total-length 37114715 Primary Assembly 11 Chromosome assembled-molecule ungapped-length 37007675 Primary Assembly 11 Chromosome assembled-molecule spanned-gaps 55 Primary Assembly 11 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 11 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 11 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 12 Chromosome all total-length 31492331 Primary Assembly 12 Chromosome all ungapped-length 31482626 Primary Assembly 12 Chromosome all spanned-gaps 50 Primary Assembly 12 Chromosome all unspanned-gaps 0 Primary Assembly 12 Chromosome assembled-molecule total-length 31492331 Primary Assembly 12 Chromosome assembled-molecule ungapped-length 31482626 Primary Assembly 12 Chromosome assembled-molecule spanned-gaps 50 Primary Assembly 12 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 12 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 12 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 13 Chromosome all total-length 39757759 Primary Assembly 13 Chromosome all ungapped-length 39745375 Primary Assembly 13 Chromosome all spanned-gaps 70 Primary Assembly 13 Chromosome all unspanned-gaps 0 Primary Assembly 13 Chromosome assembled-molecule total-length 39757759 Primary Assembly 13 Chromosome assembled-molecule ungapped-length 39745375 Primary Assembly 13 Chromosome assembled-molecule spanned-gaps 70 Primary Assembly 13 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 13 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 13 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 13 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 13 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 14 Chromosome all total-length 28841373 Primary Assembly 14 Chromosome all ungapped-length 28828190 Primary Assembly 14 Chromosome all spanned-gaps 46 Primary Assembly 14 Chromosome all unspanned-gaps 0 Primary Assembly 14 Chromosome assembled-molecule total-length 28841373 Primary Assembly 14 Chromosome assembled-molecule ungapped-length 28828190 Primary Assembly 14 Chromosome assembled-molecule spanned-gaps 46 Primary Assembly 14 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 14 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 14 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 14 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 14 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 15 Chromosome all total-length 20407330 Primary Assembly 15 Chromosome all ungapped-length 20404390 Primary Assembly 15 Chromosome all spanned-gaps 31 Primary Assembly 15 Chromosome all unspanned-gaps 0 Primary Assembly 15 Chromosome assembled-molecule total-length 20407330 Primary Assembly 15 Chromosome assembled-molecule ungapped-length 20404390 Primary Assembly 15 Chromosome assembled-molecule spanned-gaps 31 Primary Assembly 15 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 15 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 15 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 15 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 15 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 16 Chromosome all total-length 28711772 Primary Assembly 16 Chromosome all ungapped-length 28706032 Primary Assembly 16 Chromosome all spanned-gaps 51 Primary Assembly 16 Chromosome all unspanned-gaps 0 Primary Assembly 16 Chromosome assembled-molecule total-length 28711772 Primary Assembly 16 Chromosome assembled-molecule ungapped-length 28706032 Primary Assembly 16 Chromosome assembled-molecule spanned-gaps 51 Primary Assembly 16 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 16 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 16 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 16 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 16 Chromosome unlocalized-scaffold unspanned-gaps 0 non-nuclear all all all total-length 160537 non-nuclear all all all ungapped-length 160537 non-nuclear all all all spanned-gaps 0 non-nuclear all all all unspanned-gaps 0 non-nuclear all all assembled-molecule total-length 160537 non-nuclear all all assembled-molecule ungapped-length 160537 non-nuclear all all assembled-molecule spanned-gaps 0 non-nuclear all all assembled-molecule unspanned-gaps 0 non-nuclear all all unlocalized-scaffold total-length 0 non-nuclear all all unlocalized-scaffold ungapped-length 0 non-nuclear all all unlocalized-scaffold spanned-gaps 0 non-nuclear all all unlocalized-scaffold unspanned-gaps 0 non-nuclear Pltd Chloroplast all total-length 160537 non-nuclear Pltd Chloroplast all ungapped-length 160537 non-nuclear Pltd Chloroplast all spanned-gaps 0 non-nuclear Pltd Chloroplast all unspanned-gaps 0 non-nuclear Pltd Chloroplast assembled-molecule total-length 160537 non-nuclear Pltd Chloroplast assembled-molecule ungapped-length 160537 non-nuclear Pltd Chloroplast assembled-molecule spanned-gaps 0 non-nuclear Pltd Chloroplast assembled-molecule unspanned-gaps 0 non-nuclear Pltd Chloroplast unlocalized-scaffold total-length 0 non-nuclear Pltd Chloroplast unlocalized-scaffold ungapped-length 0 non-nuclear Pltd Chloroplast unlocalized-scaffold spanned-gaps 0 non-nuclear Pltd Chloroplast unlocalized-scaffold unspanned-gaps 0