# Assembly name: TyphaL0001 # Organism name: Typha latifolia (common cattail) # Isolate: L0001 # Taxid: 4733 # BioSample: SAMN14540032 # BioProject: PRJNA622838 # Submitter: Salk Institute for Biological Studies # Date: 2021-09-09 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAAWWQ01 # Assembly method: minimap2/miniasm/racon/pilon v. 0.3-r179 # Expected final version: yes # Genome coverage: 60.0x # Sequencing technology: Oxford Nanopore PromethION; Illumina NovaSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_019914945.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_019914955.1 Primary Assembly ## GCA_019914965.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chromosome_1 assembled-molecule 1 Chromosome CM034099.1 <> na Primary Assembly 24180500 na chromosome_2 assembled-molecule 2 Chromosome CM034100.1 <> na Primary Assembly 18649002 na chromosome_3 assembled-molecule 3 Chromosome CM034101.1 <> na Primary Assembly 18516015 na chromosome_4 assembled-molecule 4 Chromosome CM034102.1 <> na Primary Assembly 18192183 na chromosome_5 assembled-molecule 5 Chromosome CM034103.1 <> na Primary Assembly 16999317 na chromosome_6 assembled-molecule 6 Chromosome CM034104.1 <> na Primary Assembly 14472745 na chromosome_7 assembled-molecule 7 Chromosome CM034105.1 <> na Primary Assembly 14167408 na chromosome_8 assembled-molecule 8 Chromosome CM034106.1 <> na Primary Assembly 13114000 na chromosome_9 assembled-molecule 9 Chromosome CM034107.1 <> na Primary Assembly 11754491 na chromosome_10 assembled-molecule 10 Chromosome CM034108.1 <> na Primary Assembly 11670228 na chromosome_11 assembled-molecule 11 Chromosome CM034109.1 <> na Primary Assembly 10993805 na chromosome_12 assembled-molecule 12 Chromosome CM034110.1 <> na Primary Assembly 10558721 na chromosome_13 assembled-molecule 13 Chromosome CM034111.1 <> na Primary Assembly 9974500 na chromosome_14 assembled-molecule 14 Chromosome CM034112.1 <> na Primary Assembly 9862527 na chromosome_15 assembled-molecule 15 Chromosome CM034113.1 <> na Primary Assembly 9231500 na contig_22 unplaced-scaffold na na JAAWWQ010000016.1 <> na Primary Assembly 102420 na contig_23 unplaced-scaffold na na JAAWWQ010000017.1 <> na Primary Assembly 100000 na contig_24 unplaced-scaffold na na JAAWWQ010000018.1 <> na Primary Assembly 95156 na contig_25 unplaced-scaffold na na JAAWWQ010000019.1 <> na Primary Assembly 75000 na contig_27 unplaced-scaffold na na JAAWWQ010000020.1 <> na Primary Assembly 56088 na contig_28 unplaced-scaffold na na JAAWWQ010000021.1 <> na Primary Assembly 53155 na contig_29 unplaced-scaffold na na JAAWWQ010000022.1 <> na Primary Assembly 50000 na contig_30 unplaced-scaffold na na JAAWWQ010000023.1 <> na Primary Assembly 50000 na contig_33 unplaced-scaffold na na JAAWWQ010000025.1 <> na Primary Assembly 37515 na contig_34 unplaced-scaffold na na JAAWWQ010000026.1 <> na Primary Assembly 36324 na contig_35 unplaced-scaffold na na JAAWWQ010000027.1 <> na Primary Assembly 35467 na contig_36 unplaced-scaffold na na JAAWWQ010000028.1 <> na Primary Assembly 33529 na contig_38 unplaced-scaffold na na JAAWWQ010000030.1 <> na Primary Assembly 30517 na contig_39 unplaced-scaffold na na JAAWWQ010000031.1 <> na Primary Assembly 29000 na contig_40 unplaced-scaffold na na JAAWWQ010000032.1 <> na Primary Assembly 25000 na contig_41 unplaced-scaffold na na JAAWWQ010000033.1 <> na Primary Assembly 25000 na contig_42 unplaced-scaffold na na JAAWWQ010000034.1 <> na Primary Assembly 25000 na contig_43 unplaced-scaffold na na JAAWWQ010000035.1 <> na Primary Assembly 25000 na contig_44 unplaced-scaffold na na JAAWWQ010000036.1 <> na Primary Assembly 25000 na contig_45 unplaced-scaffold na na JAAWWQ010000037.1 <> na Primary Assembly 25000 na contig_46 unplaced-scaffold na na JAAWWQ010000038.1 <> na Primary Assembly 25000 na contig_47 unplaced-scaffold na na JAAWWQ010000039.1 <> na Primary Assembly 25000 na contig_48 unplaced-scaffold na na JAAWWQ010000040.1 <> na Primary Assembly 25000 na contig_49 unplaced-scaffold na na JAAWWQ010000041.1 <> na Primary Assembly 25000 na contig_50 unplaced-scaffold na na JAAWWQ010000042.1 <> na Primary Assembly 25000 na contig_51 unplaced-scaffold na na JAAWWQ010000043.1 <> na Primary Assembly 25000 na contig_52 unplaced-scaffold na na JAAWWQ010000044.1 <> na Primary Assembly 25000 na contig_53 unplaced-scaffold na na JAAWWQ010000045.1 <> na Primary Assembly 25000 na contig_54 unplaced-scaffold na na JAAWWQ010000046.1 <> na Primary Assembly 25000 na contig_55 unplaced-scaffold na na JAAWWQ010000047.1 <> na Primary Assembly 25000 na contig_56 unplaced-scaffold na na JAAWWQ010000048.1 <> na Primary Assembly 25000 na contig_57 unplaced-scaffold na na JAAWWQ010000049.1 <> na Primary Assembly 25000 na contig_58 unplaced-scaffold na na JAAWWQ010000050.1 <> na Primary Assembly 23571 na contig_59 unplaced-scaffold na na JAAWWQ010000051.1 <> na Primary Assembly 23442 na contig_60 unplaced-scaffold na na JAAWWQ010000052.1 <> na Primary Assembly 19912 na contig_61 unplaced-scaffold na na JAAWWQ010000053.1 <> na Primary Assembly 18909 na contig_62 unplaced-scaffold na na JAAWWQ010000054.1 <> na Primary Assembly 17210 na contig_63 unplaced-scaffold na na JAAWWQ010000055.1 <> na Primary Assembly 14829 na contig_64 unplaced-scaffold na na JAAWWQ010000056.1 <> na Primary Assembly 14252 na contig_65 unplaced-scaffold na na JAAWWQ010000057.1 <> na Primary Assembly 12485 na contig_66 unplaced-scaffold na na JAAWWQ010000058.1 <> na Primary Assembly 11583 na contig_67 unplaced-scaffold na na JAAWWQ010000059.1 <> na Primary Assembly 11237 na contig_68 unplaced-scaffold na na JAAWWQ010000060.1 <> na Primary Assembly 10797 na contig_69 unplaced-scaffold na na JAAWWQ010000061.1 <> na Primary Assembly 10741 na contig_70 unplaced-scaffold na na JAAWWQ010000062.1 <> na Primary Assembly 10476 na contig_71 unplaced-scaffold na na JAAWWQ010000063.1 <> na Primary Assembly 9721 na contig_72 unplaced-scaffold na na JAAWWQ010000064.1 <> na Primary Assembly 9458 na contig_73 unplaced-scaffold na na JAAWWQ010000065.1 <> na Primary Assembly 9248 na contig_74 unplaced-scaffold na na JAAWWQ010000066.1 <> na Primary Assembly 8988 na contig_75 unplaced-scaffold na na JAAWWQ010000067.1 <> na Primary Assembly 8272 na contig_76 unplaced-scaffold na na JAAWWQ010000068.1 <> na Primary Assembly 8182 na contig_77 unplaced-scaffold na na JAAWWQ010000069.1 <> na Primary Assembly 7000 na contig_78 unplaced-scaffold na na JAAWWQ010000070.1 <> na Primary Assembly 6091 na contig_80 unplaced-scaffold na na JAAWWQ010000071.1 <> na Primary Assembly 2218 na contig_81 unplaced-scaffold na na JAAWWQ010000072.1 <> na Primary Assembly 1699 na contig_82 unplaced-scaffold na na JAAWWQ010000073.1 <> na Primary Assembly 1558 na contig_83 unplaced-scaffold na na JAAWWQ010000074.1 <> na Primary Assembly 1080 na contig_84 unplaced-scaffold na na JAAWWQ010000075.1 <> na Primary Assembly 1000 na contig_86 unplaced-scaffold na na JAAWWQ010000077.1 <> na Primary Assembly 1000 na contig_87 unplaced-scaffold na na JAAWWQ010000078.1 <> na Primary Assembly 1000 na contig_88 unplaced-scaffold na na JAAWWQ010000079.1 <> na Primary Assembly 1000 na TyphaL0001_Mitochondria unlocalized-scaffold MT Mitochondrion JAAWWQ010000081.1 <> na non-nuclear 395057 na contig_31 unlocalized-scaffold MT Mitochondrion JAAWWQ010000024.1 <> na non-nuclear 48548 na contig_37 unlocalized-scaffold MT Mitochondrion JAAWWQ010000029.1 <> na non-nuclear 32710 na contig_85 unlocalized-scaffold MT Mitochondrion JAAWWQ010000076.1 <> na non-nuclear 1000 na contig_89 unlocalized-scaffold MT Mitochondrion JAAWWQ010000080.1 <> na non-nuclear 1000 na