2019.1.4

These are the files associated with Solanum chacoense M6 genome

###### Genome assembly #########
523_3_assembly_ALLPATHS_v4.1.fasta:         Genome assembly of S. chacoense M6, containing 8,260 scaffold sequences

### Pseudomolecules ####
M6_v4.1_PM.fa: 		Pseudomolecules of S. chacoense M6, containing 12 chromosomes
M6_v4.1_masked_PM.fa: 	Masked pseudomolecules of S. chacoense M6, containing 12 chromosomes
M6_v4.1_scaffold.agp:   AGP file describing the assembly of S. chacoense M6 scaffolds within the pseudomolecules
M6_v4.1_PM_plus_chrUn.fa:  Pseudomolecules of S. chacoense M6, containing 12 chromosomes and chrUn (unanchored scaffolds)

###### BUSCO result #########
BUSCO_result folder contains the output files from running BUSCO on the genome assembly
short_summary_BUSCO_output.txt
full_table_BUSCO_output.tsv


###### Genome annotation ########
# high-confidence genes
m6.hc.gene_models.chr_corrected.gff3: Generic feature format file (gff3) of high-confidence genes in S. chacoense M6 (Corrected version as of 04/2019)
m6.hc.gene_models.all_chrs_corrected.gff3: Generic feature format file (gff3) of high-confidence genes in S. chacoense M6, including ChrUn (Corrected version as of 04/2019)
pasa_m6.hc.gene_models.cdna.fa:  Transcript sequences (cDNA) of high-confidence genes in S. chacoense M6
pasa_m6.hc.gene_models.cds.fa:   Coding sequences (CDS) of high-confidence genes in S. chacoense M6
pasa_m6.hc.gene_models.pep.fa:   Protein sequences of high-confidence genes in S. chacoense M6
m6_gene_models.func_anno.txt:    Functional annotation of working gene model set in S. chacoense M6


# representative models of high-confidence genes
pasa_m6.hc.gene_models.repr.pep.fa:      Protein sequences of representative models of high-confidence genes in S. chacoense M6


###### Other ########
M6_gene_expression_matrix.xlsx:  Expression abundance of representative gene models
523_3_assembly_ALLPATHS_v4.1.fasta.repeatmasker.gff:       GFF file of the repeat-masked genome