2017.10.02

Files for the medicinal plant Calotropis gigantea, a producer of anti-cancer and anti-malarial cardenolides

###Genome Assembly###
CAL_genome_asm_v2.2_1000_rmscaff.fasta	#Final genome assembly for C. gigantea
CAL_genome_asm_v2.2_1000_rmscaff_hard_masked.fasta	#Final hard masked genome assembly for C. gigantea
CAL_genome_asm_v2.2_1000_rmscaff_soft_masked.fasta	#Final soft masked genome assembly for C. gigantea

###BUSCO Results###
short_summary_asm_v2.2_1000.txt	#Table summary of the number and percentage of Embryophyta orthologs for each category
full_table_asm_v2.2_1000.tsv	#Table providing the location in the genome assembly for each Embryophyta ortholog
missing_busco_list_asm_v2.2_1000.tsv	#List of missing Embryophyta orthologs from the genome assembly

###Genome Annotation###
cal_hc_gene_models.rmscaff.gff3	#Generic feature format (gff3) of high-confidence genes in C. gigantea
cal_hc_gene_models.rmscaff.cdna.fa	#Transcript sequences (cDNA) of high-confidence genes in C. gigantea
cal_hc_gene_models.rmscaff.cds.fa	#Coding sequences (CDS) of high-confidence genes in C. gigantea
cal_hc_gene_models.rmscaff.pep.fa	#Protein sequences of high-confidence genes in C. gigantea
cal_hc_repr_gene_models.rmscaff.gff3	#Generic feature format (gff3) of representative models for high-confidence genes in C. gigantea
cal_hc_gene_models.rmscaff.repr.pep.fa	#Protein sequences of representative models for high-confidence genes in C. gigantea
cal_hc_func_anno.txt	#Functional annotation for high-confidence genes in C. gigantea

###FPKM Matrix###
cal_FPKM_matrix.txt	#Table with FPKM expression values for high-confidence genes in C. gigantea