# Assembly Statistics Report # Assembly name: ASM2559438v1 # Organism name: Acer negundo (box elder) # Isolate: 91603 # Taxid: 4023 # BioSample: SAMN20429306 # BioProject: PRJNA750066 # Submitter: University of Connecticut # Date: 2022-10-06 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAJSOW01 # Assembly method: FALCON-Unzip pb-assembly v. 0.6.0 # Expected final version: yes # Genome coverage: 141.0x # Sequencing technology: PacBio Sequel # RefSeq category: Representative Genome # GenBank assembly accession: GCA_025594385.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_025594705.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # gc-perc gc-count/atgc-count as percentage # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 442441229 all all all all spanned-gaps 1071 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 108 all all all all scaffold-N50 32304000 all all all all scaffold-L50 6 all all all all scaffold-N75 29334433 all all all all scaffold-N90 26422946 all all all all contig-count 1179 all all all all contig-N50 678886 all all all all contig-L50 187 all all all all total-gap-length 535500 all all all all molecule-count 13 all all all all top-level-count 108 all all all all component-count 108 all all all all gc-perc 34 Primary Assembly all all all total-length 442441229 Primary Assembly all all all ungapped-length 441905729 Primary Assembly all all all scaffold-count 108 Primary Assembly all all all scaffold-N50 32304000 Primary Assembly all all all spanned-gaps 1071 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all all gc-perc 34 Primary Assembly all all assembled-molecule total-length 441280302 Primary Assembly all all assembled-molecule ungapped-length 440745802 Primary Assembly all all assembled-molecule scaffold-count 13 Primary Assembly all all assembled-molecule scaffold-N50 32304000 Primary Assembly all all assembled-molecule spanned-gaps 1069 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all assembled-molecule gc-perc 34 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 1160927 Primary Assembly na na unplaced-scaffold ungapped-length 1159927 Primary Assembly na na unplaced-scaffold scaffold-count 95 Primary Assembly na na unplaced-scaffold scaffold-N50 27034 Primary Assembly na na unplaced-scaffold spanned-gaps 2 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold gc-perc 34.5 Primary Assembly 1 Chromosome all total-length 51671011 Primary Assembly 1 Chromosome all ungapped-length 51609011 Primary Assembly 1 Chromosome all scaffold-count 1 Primary Assembly 1 Chromosome all scaffold-N50 51671011 Primary Assembly 1 Chromosome all spanned-gaps 124 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome all gc-perc 34 Primary Assembly 1 Chromosome assembled-molecule total-length 51671011 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 51609011 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 51671011 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 124 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule gc-perc 34 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 49136802 Primary Assembly 2 Chromosome all ungapped-length 49082302 Primary Assembly 2 Chromosome all scaffold-count 1 Primary Assembly 2 Chromosome all scaffold-N50 49136802 Primary Assembly 2 Chromosome all spanned-gaps 109 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome all gc-perc 34 Primary Assembly 2 Chromosome assembled-molecule total-length 49136802 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 49082302 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 49136802 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 109 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule gc-perc 34 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 41658500 Primary Assembly 3 Chromosome all ungapped-length 41600000 Primary Assembly 3 Chromosome all scaffold-count 1 Primary Assembly 3 Chromosome all scaffold-N50 41658500 Primary Assembly 3 Chromosome all spanned-gaps 117 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome all gc-perc 34 Primary Assembly 3 Chromosome assembled-molecule total-length 41658500 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 41600000 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 41658500 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 117 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule gc-perc 34 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 37510000 Primary Assembly 4 Chromosome all ungapped-length 37458000 Primary Assembly 4 Chromosome all scaffold-count 1 Primary Assembly 4 Chromosome all scaffold-N50 37510000 Primary Assembly 4 Chromosome all spanned-gaps 104 Primary Assembly 4 Chromosome all unspanned-gaps 0 Primary Assembly 4 Chromosome all gc-perc 34 Primary Assembly 4 Chromosome assembled-molecule total-length 37510000 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 37458000 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 37510000 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 104 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule gc-perc 34 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 33812531 Primary Assembly 5 Chromosome all ungapped-length 33775531 Primary Assembly 5 Chromosome all scaffold-count 1 Primary Assembly 5 Chromosome all scaffold-N50 33812531 Primary Assembly 5 Chromosome all spanned-gaps 74 Primary Assembly 5 Chromosome all unspanned-gaps 0 Primary Assembly 5 Chromosome all gc-perc 34 Primary Assembly 5 Chromosome assembled-molecule total-length 33812531 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 33775531 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 33812531 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 74 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule gc-perc 34 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 32304000 Primary Assembly 6 Chromosome all ungapped-length 32255000 Primary Assembly 6 Chromosome all scaffold-count 1 Primary Assembly 6 Chromosome all scaffold-N50 32304000 Primary Assembly 6 Chromosome all spanned-gaps 98 Primary Assembly 6 Chromosome all unspanned-gaps 0 Primary Assembly 6 Chromosome all gc-perc 34.5 Primary Assembly 6 Chromosome assembled-molecule total-length 32304000 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 32255000 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 32304000 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 98 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule gc-perc 34.5 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 30451126 Primary Assembly 7 Chromosome all ungapped-length 30422626 Primary Assembly 7 Chromosome all scaffold-count 1 Primary Assembly 7 Chromosome all scaffold-N50 30451126 Primary Assembly 7 Chromosome all spanned-gaps 57 Primary Assembly 7 Chromosome all unspanned-gaps 0 Primary Assembly 7 Chromosome all gc-perc 34 Primary Assembly 7 Chromosome assembled-molecule total-length 30451126 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 30422626 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 30451126 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 57 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule gc-perc 34 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 8 Chromosome all total-length 30120719 Primary Assembly 8 Chromosome all ungapped-length 30084219 Primary Assembly 8 Chromosome all scaffold-count 1 Primary Assembly 8 Chromosome all scaffold-N50 30120719 Primary Assembly 8 Chromosome all spanned-gaps 73 Primary Assembly 8 Chromosome all unspanned-gaps 0 Primary Assembly 8 Chromosome all gc-perc 34.5 Primary Assembly 8 Chromosome assembled-molecule total-length 30120719 Primary Assembly 8 Chromosome assembled-molecule ungapped-length 30084219 Primary Assembly 8 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 8 Chromosome assembled-molecule scaffold-N50 30120719 Primary Assembly 8 Chromosome assembled-molecule spanned-gaps 73 Primary Assembly 8 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 8 Chromosome assembled-molecule gc-perc 34.5 Primary Assembly 8 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 8 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 9 Chromosome all total-length 29334433 Primary Assembly 9 Chromosome all ungapped-length 29304433 Primary Assembly 9 Chromosome all scaffold-count 1 Primary Assembly 9 Chromosome all scaffold-N50 29334433 Primary Assembly 9 Chromosome all spanned-gaps 60 Primary Assembly 9 Chromosome all unspanned-gaps 0 Primary Assembly 9 Chromosome all gc-perc 34 Primary Assembly 9 Chromosome assembled-molecule total-length 29334433 Primary Assembly 9 Chromosome assembled-molecule ungapped-length 29304433 Primary Assembly 9 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 9 Chromosome assembled-molecule scaffold-N50 29334433 Primary Assembly 9 Chromosome assembled-molecule spanned-gaps 60 Primary Assembly 9 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 9 Chromosome assembled-molecule gc-perc 34 Primary Assembly 9 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 9 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 10 Chromosome all total-length 27516629 Primary Assembly 10 Chromosome all ungapped-length 27491129 Primary Assembly 10 Chromosome all scaffold-count 1 Primary Assembly 10 Chromosome all scaffold-N50 27516629 Primary Assembly 10 Chromosome all spanned-gaps 51 Primary Assembly 10 Chromosome all unspanned-gaps 0 Primary Assembly 10 Chromosome all gc-perc 34.5 Primary Assembly 10 Chromosome assembled-molecule total-length 27516629 Primary Assembly 10 Chromosome assembled-molecule ungapped-length 27491129 Primary Assembly 10 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 10 Chromosome assembled-molecule scaffold-N50 27516629 Primary Assembly 10 Chromosome assembled-molecule spanned-gaps 51 Primary Assembly 10 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 10 Chromosome assembled-molecule gc-perc 34.5 Primary Assembly 10 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 10 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 11 Chromosome all total-length 27372411 Primary Assembly 11 Chromosome all ungapped-length 27335411 Primary Assembly 11 Chromosome all scaffold-count 1 Primary Assembly 11 Chromosome all scaffold-N50 27372411 Primary Assembly 11 Chromosome all spanned-gaps 74 Primary Assembly 11 Chromosome all unspanned-gaps 0 Primary Assembly 11 Chromosome all gc-perc 34 Primary Assembly 11 Chromosome assembled-molecule total-length 27372411 Primary Assembly 11 Chromosome assembled-molecule ungapped-length 27335411 Primary Assembly 11 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 11 Chromosome assembled-molecule scaffold-N50 27372411 Primary Assembly 11 Chromosome assembled-molecule spanned-gaps 74 Primary Assembly 11 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 11 Chromosome assembled-molecule gc-perc 34 Primary Assembly 11 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 11 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 11 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 12 Chromosome all total-length 26422946 Primary Assembly 12 Chromosome all ungapped-length 26393946 Primary Assembly 12 Chromosome all scaffold-count 1 Primary Assembly 12 Chromosome all scaffold-N50 26422946 Primary Assembly 12 Chromosome all spanned-gaps 58 Primary Assembly 12 Chromosome all unspanned-gaps 0 Primary Assembly 12 Chromosome all gc-perc 34 Primary Assembly 12 Chromosome assembled-molecule total-length 26422946 Primary Assembly 12 Chromosome assembled-molecule ungapped-length 26393946 Primary Assembly 12 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 12 Chromosome assembled-molecule scaffold-N50 26422946 Primary Assembly 12 Chromosome assembled-molecule spanned-gaps 58 Primary Assembly 12 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 12 Chromosome assembled-molecule gc-perc 34 Primary Assembly 12 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 12 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 12 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 12 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 13 Chromosome all total-length 23969194 Primary Assembly 13 Chromosome all ungapped-length 23934194 Primary Assembly 13 Chromosome all scaffold-count 1 Primary Assembly 13 Chromosome all scaffold-N50 23969194 Primary Assembly 13 Chromosome all spanned-gaps 70 Primary Assembly 13 Chromosome all unspanned-gaps 0 Primary Assembly 13 Chromosome all gc-perc 34 Primary Assembly 13 Chromosome assembled-molecule total-length 23969194 Primary Assembly 13 Chromosome assembled-molecule ungapped-length 23934194 Primary Assembly 13 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 13 Chromosome assembled-molecule scaffold-N50 23969194 Primary Assembly 13 Chromosome assembled-molecule spanned-gaps 70 Primary Assembly 13 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 13 Chromosome assembled-molecule gc-perc 34 Primary Assembly 13 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 13 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 13 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 13 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 13 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 13 Chromosome unlocalized-scaffold unspanned-gaps 0