# Assembly Statistics Report # Assembly name: hl_KR_version_1.0.fasta # Organism name: Humulus lupulus var. cordifolius (European hop) # Taxid: 278022 # BioSample: SAMD00021059 # BioProject: PRJDB3233 # Submitter: Iwate Biotechnology Research Center # Date: 2014-12-20 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: BBPB01 # Assembly method: CLC Assembly Cell v. 3.22, SSPACE Premium v. 2.3, Gap Closure v.1.12, BWA v. 0.6, Coval v. 1.4 # Genome coverage: 40x # Sequencing technology: Illumina GA IIx # Excluded from RefSeq: contaminated # Assembly anomaly: contaminated # GenBank assembly accession: GCA_000830395.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000830405.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # gc-perc gc-count/atgc-count as percentage # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 2049208583 all all all all spanned-gaps 160222 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 132476 all all all all scaffold-N50 37081 all all all all scaffold-L50 16585 all all all all scaffold-N75 18668 all all all all scaffold-N90 7941 all all all all contig-count 292698 all all all all contig-N50 10902 all all all all contig-L50 47049 all all all all total-gap-length 273071777 all all all all molecule-count 0 all all all all top-level-count 132476 all all all all component-count 292698 all all all all gc-perc 38.5 Primary Assembly all all all total-length 2049208583 Primary Assembly all all all ungapped-length 1776136806 Primary Assembly all all all scaffold-count 132476 Primary Assembly all all all scaffold-N50 37081 Primary Assembly all all all spanned-gaps 160222 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all all gc-perc 38.5 Primary Assembly all all assembled-molecule total-length 0 Primary Assembly all all assembled-molecule ungapped-length 0 Primary Assembly all all assembled-molecule scaffold-count 0 Primary Assembly all all assembled-molecule scaffold-N50 0 Primary Assembly all all assembled-molecule spanned-gaps 0 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 2049208583 Primary Assembly na na unplaced-scaffold ungapped-length 1776136806 Primary Assembly na na unplaced-scaffold scaffold-count 132476 Primary Assembly na na unplaced-scaffold scaffold-N50 37081 Primary Assembly na na unplaced-scaffold spanned-gaps 160222 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold gc-perc 38.5