# Assembly Statistics Report # Assembly name: Ptaeda1.01 # Organism name: Pinus taeda (loblolly pine) # Taxid: 3352 # BioSample: SAMN02981512 # BioProject: PRJNA174450 # Submitter: TreeGenes Database # Date: 2015-8-6 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: APFE02 # Assembly method: MaSuRCA v. June 2013; SOAPdenovo v. June 2013 # Expected final version: Yes # Genome coverage: 63x # Sequencing technology: Illumina; Fosmid DiTag # RefSeq category: Representative Genome # GenBank assembly accession: GCA_000404065.2 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000404075.2 Primary Assembly # # Statistic Types # Statistic Description # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 22061874510 all all all all spanned-gaps 4100637 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all contig-count 11183146 all all all all contig-N50 11216 all all all all total-gap-length 3031970620 all all all all molecule-count 0 all all all all top-level-count 7082509 Primary Assembly all all all total-length 22061874510 Primary Assembly all all all ungapped-length 19029903890 Primary Assembly all all all spanned-gaps 4100637 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all assembled-molecule total-length 0 Primary Assembly all all assembled-molecule ungapped-length 0 Primary Assembly all all assembled-molecule spanned-gaps 0 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0