# Assembly Statistics Report # Assembly name: Gossypium_arboreum_v1.0 # Organism name: Gossypium arboreum (tree cotton) # Infraspecific name: cultivar=Shixiya1 # Taxid: 29729 # BioSample: SAMN02981570 # BioProject: PRJNA203683 # Submitter: BGI # Date: 2015-09-28 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: AYOE01 # Assembly method: SOAPdenovo v. 2.01 # Genome coverage: 110x # Sequencing technology: Illumina Hiseq2000 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_000612285.2 # RefSeq assembly accession: GCF_000612285.1 # RefSeq assembly and GenBank assemblies identical: no # Reporting on RefSeq assembly. # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000612295.2 GCF_000612295.1 Primary Assembly ## GCF_001696745.1 non-nuclear # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 1694597732 all all all all spanned-gaps 45766 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 75419 all all all all scaffold-N50 121339338 all all all all scaffold-L50 7 all all all all scaffold-N75 102937913 all all all all scaffold-N90 59691364 all all all all contig-count 121185 all all all all contig-N50 71980 all all all all contig-L50 6416 all all all all total-gap-length 133605611 all all all all molecule-count 14 all all all all top-level-count 75419 all all all all component-count 121185 Primary Assembly all all all total-length 1694437502 Primary Assembly all all all ungapped-length 1560831891 Primary Assembly all all all scaffold-count 75418 Primary Assembly all all all scaffold-N50 121339338 Primary Assembly all all all spanned-gaps 45766 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all assembled-molecule total-length 1532047919 Primary Assembly all all assembled-molecule ungapped-length 1423023167 Primary Assembly all all assembled-molecule scaffold-count 13 Primary Assembly all all assembled-molecule scaffold-N50 127390875 Primary Assembly all all assembled-molecule spanned-gaps 40687 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 162389583 Primary Assembly na na unplaced-scaffold ungapped-length 137808724 Primary Assembly na na unplaced-scaffold scaffold-count 75405 Primary Assembly na na unplaced-scaffold scaffold-N50 84920 Primary Assembly na na unplaced-scaffold spanned-gaps 5079 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly 1 Chromosome all total-length 147124936 Primary Assembly 1 Chromosome all ungapped-length 136044831 Primary Assembly 1 Chromosome all scaffold-count 1 Primary Assembly 1 Chromosome all scaffold-N50 147124936 Primary Assembly 1 Chromosome all spanned-gaps 3939 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule total-length 147124936 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 136044831 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 147124936 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 3939 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 101023042 Primary Assembly 2 Chromosome all ungapped-length 92196142 Primary Assembly 2 Chromosome all scaffold-count 1 Primary Assembly 2 Chromosome all scaffold-N50 101023042 Primary Assembly 2 Chromosome all spanned-gaps 2829 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule total-length 101023042 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 92196142 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 101023042 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 2829 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 102937913 Primary Assembly 3 Chromosome all ungapped-length 95922286 Primary Assembly 3 Chromosome all scaffold-count 1 Primary Assembly 3 Chromosome all scaffold-N50 102937913 Primary Assembly 3 Chromosome all spanned-gaps 2700 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule total-length 102937913 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 95922286 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 102937913 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 2700 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 137675496 Primary Assembly 4 Chromosome all ungapped-length 128034796 Primary Assembly 4 Chromosome all scaffold-count 1 Primary Assembly 4 Chromosome all scaffold-N50 137675496 Primary Assembly 4 Chromosome all spanned-gaps 3636 Primary Assembly 4 Chromosome all unspanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule total-length 137675496 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 128034796 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 137675496 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 3636 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 59691364 Primary Assembly 5 Chromosome all ungapped-length 55718141 Primary Assembly 5 Chromosome all scaffold-count 1 Primary Assembly 5 Chromosome all scaffold-N50 59691364 Primary Assembly 5 Chromosome all spanned-gaps 1509 Primary Assembly 5 Chromosome all unspanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule total-length 59691364 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 55718141 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 59691364 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 1509 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 121339338 Primary Assembly 6 Chromosome all ungapped-length 113320201 Primary Assembly 6 Chromosome all scaffold-count 1 Primary Assembly 6 Chromosome all scaffold-N50 121339338 Primary Assembly 6 Chromosome all spanned-gaps 3120 Primary Assembly 6 Chromosome all unspanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule total-length 121339338 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 113320201 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 121339338 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 3120 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 127721098 Primary Assembly 7 Chromosome all ungapped-length 119019729 Primary Assembly 7 Chromosome all scaffold-count 1 Primary Assembly 7 Chromosome all scaffold-N50 127721098 Primary Assembly 7 Chromosome all spanned-gaps 3329 Primary Assembly 7 Chromosome all unspanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule total-length 127721098 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 119019729 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 127721098 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 3329 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 8 Chromosome all total-length 127390875 Primary Assembly 8 Chromosome all ungapped-length 117631560 Primary Assembly 8 Chromosome all scaffold-count 1 Primary Assembly 8 Chromosome all scaffold-N50 127390875 Primary Assembly 8 Chromosome all spanned-gaps 3403 Primary Assembly 8 Chromosome all unspanned-gaps 0 Primary Assembly 8 Chromosome assembled-molecule total-length 127390875 Primary Assembly 8 Chromosome assembled-molecule ungapped-length 117631560 Primary Assembly 8 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 8 Chromosome assembled-molecule scaffold-N50 127390875 Primary Assembly 8 Chromosome assembled-molecule spanned-gaps 3403 Primary Assembly 8 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 8 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 9 Chromosome all total-length 96604005 Primary Assembly 9 Chromosome all ungapped-length 90653035 Primary Assembly 9 Chromosome all scaffold-count 1 Primary Assembly 9 Chromosome all scaffold-N50 96604005 Primary Assembly 9 Chromosome all spanned-gaps 2587 Primary Assembly 9 Chromosome all unspanned-gaps 0 Primary Assembly 9 Chromosome assembled-molecule total-length 96604005 Primary Assembly 9 Chromosome assembled-molecule ungapped-length 90653035 Primary Assembly 9 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 9 Chromosome assembled-molecule scaffold-N50 96604005 Primary Assembly 9 Chromosome assembled-molecule spanned-gaps 2587 Primary Assembly 9 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 9 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 10 Chromosome all total-length 114683840 Primary Assembly 10 Chromosome all ungapped-length 106767962 Primary Assembly 10 Chromosome all scaffold-count 1 Primary Assembly 10 Chromosome all scaffold-N50 114683840 Primary Assembly 10 Chromosome all spanned-gaps 3032 Primary Assembly 10 Chromosome all unspanned-gaps 0 Primary Assembly 10 Chromosome assembled-molecule total-length 114683840 Primary Assembly 10 Chromosome assembled-molecule ungapped-length 106767962 Primary Assembly 10 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 10 Chromosome assembled-molecule scaffold-N50 114683840 Primary Assembly 10 Chromosome assembled-molecule spanned-gaps 3032 Primary Assembly 10 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 10 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 11 Chromosome all total-length 105699404 Primary Assembly 11 Chromosome all ungapped-length 98873461 Primary Assembly 11 Chromosome all scaffold-count 1 Primary Assembly 11 Chromosome all scaffold-N50 105699404 Primary Assembly 11 Chromosome all spanned-gaps 2808 Primary Assembly 11 Chromosome all unspanned-gaps 0 Primary Assembly 11 Chromosome assembled-molecule total-length 105699404 Primary Assembly 11 Chromosome assembled-molecule ungapped-length 98873461 Primary Assembly 11 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 11 Chromosome assembled-molecule scaffold-N50 105699404 Primary Assembly 11 Chromosome assembled-molecule spanned-gaps 2808 Primary Assembly 11 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 11 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 11 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 11 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 12 Chromosome all total-length 146008498 Primary Assembly 12 Chromosome all ungapped-length 135490061 Primary Assembly 12 Chromosome all scaffold-count 1 Primary Assembly 12 Chromosome all scaffold-N50 146008498 Primary Assembly 12 Chromosome all spanned-gaps 3833 Primary Assembly 12 Chromosome all unspanned-gaps 0 Primary Assembly 12 Chromosome assembled-molecule total-length 146008498 Primary Assembly 12 Chromosome assembled-molecule ungapped-length 135490061 Primary Assembly 12 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 12 Chromosome assembled-molecule scaffold-N50 146008498 Primary Assembly 12 Chromosome assembled-molecule spanned-gaps 3833 Primary Assembly 12 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 12 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 12 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 12 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 12 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 13 Chromosome all total-length 144148110 Primary Assembly 13 Chromosome all ungapped-length 133350962 Primary Assembly 13 Chromosome all scaffold-count 1 Primary Assembly 13 Chromosome all scaffold-N50 144148110 Primary Assembly 13 Chromosome all spanned-gaps 3962 Primary Assembly 13 Chromosome all unspanned-gaps 0 Primary Assembly 13 Chromosome assembled-molecule total-length 144148110 Primary Assembly 13 Chromosome assembled-molecule ungapped-length 133350962 Primary Assembly 13 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 13 Chromosome assembled-molecule scaffold-N50 144148110 Primary Assembly 13 Chromosome assembled-molecule spanned-gaps 3962 Primary Assembly 13 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 13 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 13 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 13 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 13 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 13 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 13 Chromosome unlocalized-scaffold unspanned-gaps 0 non-nuclear all all all total-length 160230 non-nuclear all all all ungapped-length 160230 non-nuclear all all all scaffold-count 1 non-nuclear all all all scaffold-N50 160230 non-nuclear all all all spanned-gaps 0 non-nuclear all all all unspanned-gaps 0 non-nuclear all all assembled-molecule total-length 160230 non-nuclear all all assembled-molecule ungapped-length 160230 non-nuclear all all assembled-molecule scaffold-count 1 non-nuclear all all assembled-molecule scaffold-N50 160230 non-nuclear all all assembled-molecule spanned-gaps 0 non-nuclear all all assembled-molecule unspanned-gaps 0 non-nuclear all all unlocalized-scaffold total-length 0 non-nuclear all all unlocalized-scaffold ungapped-length 0 non-nuclear all all unlocalized-scaffold scaffold-count 0 non-nuclear all all unlocalized-scaffold scaffold-N50 0 non-nuclear all all unlocalized-scaffold spanned-gaps 0 non-nuclear all all unlocalized-scaffold unspanned-gaps 0 non-nuclear Pltd Chloroplast all total-length 160230 non-nuclear Pltd Chloroplast all ungapped-length 160230 non-nuclear Pltd Chloroplast all scaffold-count 1 non-nuclear Pltd Chloroplast all scaffold-N50 160230 non-nuclear Pltd Chloroplast all spanned-gaps 0 non-nuclear Pltd Chloroplast all unspanned-gaps 0 non-nuclear Pltd Chloroplast assembled-molecule total-length 160230 non-nuclear Pltd Chloroplast assembled-molecule ungapped-length 160230 non-nuclear Pltd Chloroplast assembled-molecule scaffold-count 1 non-nuclear Pltd Chloroplast assembled-molecule scaffold-N50 160230 non-nuclear Pltd Chloroplast assembled-molecule spanned-gaps 0 non-nuclear Pltd Chloroplast assembled-molecule unspanned-gaps 0 non-nuclear Pltd Chloroplast unlocalized-scaffold total-length 0 non-nuclear Pltd Chloroplast unlocalized-scaffold ungapped-length 0 non-nuclear Pltd Chloroplast unlocalized-scaffold scaffold-count 0 non-nuclear Pltd Chloroplast unlocalized-scaffold scaffold-N50 0 non-nuclear Pltd Chloroplast unlocalized-scaffold spanned-gaps 0 non-nuclear Pltd Chloroplast unlocalized-scaffold unspanned-gaps 0