# Assembly Statistics Report # Assembly name: ASM35022v2 # Organism name: Chondrus crispus (carragheen) # Infraspecific name: strain=Stackhouse # Taxid: 2769 # BioSample: SAMEA2272275 # BioProject: PRJEA78309 # Submitter: Genoscope - Centre National de Sequencage # Date: 2013-05-22 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: CAKH01 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_000350225.2 # RefSeq assembly accession: GCF_000350225.1 # RefSeq assembly and GenBank assemblies identical: yes # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_000350235.2 GCF_000350235.1 Primary Assembly ## GCA_000350245.1 GCF_000350245.1 non-nuclear # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 104980420 all all all all spanned-gaps 2316 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 926 all all all all scaffold-N50 242694 all all all all scaffold-L50 126 all all all all scaffold-N75 141625 all all all all scaffold-N90 69979 all all all all contig-count 3242 all all all all contig-N50 77748 all all all all contig-L50 392 all all all all total-gap-length 895144 all all all all molecule-count 1 all all all all top-level-count 926 all all all all component-count 3242 Primary Assembly all all all total-length 104800334 Primary Assembly all all all ungapped-length 103905190 Primary Assembly all all all scaffold-count 925 Primary Assembly all all all scaffold-N50 242694 Primary Assembly all all all spanned-gaps 2316 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all assembled-molecule total-length 0 Primary Assembly all all assembled-molecule ungapped-length 0 Primary Assembly all all assembled-molecule scaffold-count 0 Primary Assembly all all assembled-molecule scaffold-N50 0 Primary Assembly all all assembled-molecule spanned-gaps 0 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 104800334 Primary Assembly na na unplaced-scaffold ungapped-length 103905190 Primary Assembly na na unplaced-scaffold scaffold-count 925 Primary Assembly na na unplaced-scaffold scaffold-N50 242694 Primary Assembly na na unplaced-scaffold spanned-gaps 2316 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 non-nuclear all all all total-length 180086 non-nuclear all all all ungapped-length 180086 non-nuclear all all all scaffold-count 1 non-nuclear all all all scaffold-N50 180086 non-nuclear all all all spanned-gaps 0 non-nuclear all all all unspanned-gaps 0 non-nuclear all all assembled-molecule total-length 180086 non-nuclear all all assembled-molecule ungapped-length 180086 non-nuclear all all assembled-molecule scaffold-count 1 non-nuclear all all assembled-molecule scaffold-N50 180086 non-nuclear all all assembled-molecule spanned-gaps 0 non-nuclear all all assembled-molecule unspanned-gaps 0 non-nuclear all all unlocalized-scaffold total-length 0 non-nuclear all all unlocalized-scaffold ungapped-length 0 non-nuclear all all unlocalized-scaffold scaffold-count 0 non-nuclear all all unlocalized-scaffold scaffold-N50 0 non-nuclear all all unlocalized-scaffold spanned-gaps 0 non-nuclear all all unlocalized-scaffold unspanned-gaps 0 non-nuclear Pltd Plastid all total-length 180086 non-nuclear Pltd Plastid all ungapped-length 180086 non-nuclear Pltd Plastid all scaffold-count 1 non-nuclear Pltd Plastid all scaffold-N50 180086 non-nuclear Pltd Plastid all spanned-gaps 0 non-nuclear Pltd Plastid all unspanned-gaps 0 non-nuclear Pltd Plastid assembled-molecule total-length 180086 non-nuclear Pltd Plastid assembled-molecule ungapped-length 180086 non-nuclear Pltd Plastid assembled-molecule scaffold-count 1 non-nuclear Pltd Plastid assembled-molecule scaffold-N50 180086 non-nuclear Pltd Plastid assembled-molecule spanned-gaps 0 non-nuclear Pltd Plastid assembled-molecule unspanned-gaps 0 non-nuclear Pltd Plastid unlocalized-scaffold total-length 0 non-nuclear Pltd Plastid unlocalized-scaffold ungapped-length 0 non-nuclear Pltd Plastid unlocalized-scaffold scaffold-count 0 non-nuclear Pltd Plastid unlocalized-scaffold scaffold-N50 0 non-nuclear Pltd Plastid unlocalized-scaffold spanned-gaps 0 non-nuclear Pltd Plastid unlocalized-scaffold unspanned-gaps 0