# Assembly Statistics Report # Assembly name: DVS_A1.0 # Organism name: Citrus sinensis (sweet orange) # Infraspecific name: cultivar=Valencia sweet orange # Taxid: 2711 # BioSample: SAMN19611724 # BioProject: PRJNA736174 # Submitter: Clemson University # Date: 2022-02-11 # Assembly type: haploid # Release type: minor # Assembly level: Chromosome # Genome representation: full # WGS project: JAHMIS01 # Assembly method: FALCON-Unzip v. 2.0; CANU v. 2.0 # Expected final version: yes # Genome coverage: 117x # Sequencing technology: PacBio Sequel II # RefSeq category: Representative Genome # GenBank assembly accession: GCA_022201045.1 # RefSeq assembly accession: GCF_022201045.2 # RefSeq assembly and GenBank assemblies identical: no # Reporting on RefSeq assembly. # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_022201055.1 GCF_022201055.1 Primary Assembly ## GCF_026564795.2 non-nuclear # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # gc-perc gc-count/atgc-count as percentage # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 299778546 all all all all spanned-gaps 0 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 11 all all all all scaffold-N50 32942340 all all all all scaffold-L50 4 all all all all scaffold-N75 29493366 all all all all scaffold-N90 26176707 all all all all contig-count 11 all all all all contig-N50 32942340 all all all all contig-L50 4 all all all all total-gap-length 0 all all all all molecule-count 11 all all all all top-level-count 11 all all all all component-count 11 all all all all gc-perc 34 Primary Assembly all all all total-length 298977511 Primary Assembly all all all ungapped-length 298977511 Primary Assembly all all all scaffold-count 9 Primary Assembly all all all scaffold-N50 32942340 Primary Assembly all all all spanned-gaps 0 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all all gc-perc 34 Primary Assembly all all assembled-molecule total-length 298977511 Primary Assembly all all assembled-molecule ungapped-length 298977511 Primary Assembly all all assembled-molecule scaffold-count 9 Primary Assembly all all assembled-molecule scaffold-N50 32942340 Primary Assembly all all assembled-molecule spanned-gaps 0 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all assembled-molecule gc-perc 34 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly 1 Chromosome all total-length 24849987 Primary Assembly 1 Chromosome all ungapped-length 24849987 Primary Assembly 1 Chromosome all scaffold-count 1 Primary Assembly 1 Chromosome all scaffold-N50 24849987 Primary Assembly 1 Chromosome all spanned-gaps 0 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome all gc-perc 34 Primary Assembly 1 Chromosome assembled-molecule total-length 24849987 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 24849987 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 24849987 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule gc-perc 34 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 32942340 Primary Assembly 2 Chromosome all ungapped-length 32942340 Primary Assembly 2 Chromosome all scaffold-count 1 Primary Assembly 2 Chromosome all scaffold-N50 32942340 Primary Assembly 2 Chromosome all spanned-gaps 0 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome all gc-perc 34 Primary Assembly 2 Chromosome assembled-molecule total-length 32942340 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 32942340 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 32942340 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule gc-perc 34 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 52308633 Primary Assembly 3 Chromosome all ungapped-length 52308633 Primary Assembly 3 Chromosome all scaffold-count 1 Primary Assembly 3 Chromosome all scaffold-N50 52308633 Primary Assembly 3 Chromosome all spanned-gaps 0 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome all gc-perc 34 Primary Assembly 3 Chromosome assembled-molecule total-length 52308633 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 52308633 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 52308633 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule gc-perc 34 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 29627743 Primary Assembly 4 Chromosome all ungapped-length 29627743 Primary Assembly 4 Chromosome all scaffold-count 1 Primary Assembly 4 Chromosome all scaffold-N50 29627743 Primary Assembly 4 Chromosome all spanned-gaps 0 Primary Assembly 4 Chromosome all unspanned-gaps 0 Primary Assembly 4 Chromosome all gc-perc 34.5 Primary Assembly 4 Chromosome assembled-molecule total-length 29627743 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 29627743 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 29627743 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule gc-perc 34.5 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 38998145 Primary Assembly 5 Chromosome all ungapped-length 38998145 Primary Assembly 5 Chromosome all scaffold-count 1 Primary Assembly 5 Chromosome all scaffold-N50 38998145 Primary Assembly 5 Chromosome all spanned-gaps 0 Primary Assembly 5 Chromosome all unspanned-gaps 0 Primary Assembly 5 Chromosome all gc-perc 34.5 Primary Assembly 5 Chromosome assembled-molecule total-length 38998145 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 38998145 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 38998145 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule gc-perc 34.5 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 26176707 Primary Assembly 6 Chromosome all ungapped-length 26176707 Primary Assembly 6 Chromosome all scaffold-count 1 Primary Assembly 6 Chromosome all scaffold-N50 26176707 Primary Assembly 6 Chromosome all spanned-gaps 0 Primary Assembly 6 Chromosome all unspanned-gaps 0 Primary Assembly 6 Chromosome all gc-perc 34.5 Primary Assembly 6 Chromosome assembled-molecule total-length 26176707 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 26176707 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 26176707 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule gc-perc 34.5 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 29493366 Primary Assembly 7 Chromosome all ungapped-length 29493366 Primary Assembly 7 Chromosome all scaffold-count 1 Primary Assembly 7 Chromosome all scaffold-N50 29493366 Primary Assembly 7 Chromosome all spanned-gaps 0 Primary Assembly 7 Chromosome all unspanned-gaps 0 Primary Assembly 7 Chromosome all gc-perc 34 Primary Assembly 7 Chromosome assembled-molecule total-length 29493366 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 29493366 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 29493366 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule gc-perc 34 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 8 Chromosome all total-length 30582302 Primary Assembly 8 Chromosome all ungapped-length 30582302 Primary Assembly 8 Chromosome all scaffold-count 1 Primary Assembly 8 Chromosome all scaffold-N50 30582302 Primary Assembly 8 Chromosome all spanned-gaps 0 Primary Assembly 8 Chromosome all unspanned-gaps 0 Primary Assembly 8 Chromosome all gc-perc 34.5 Primary Assembly 8 Chromosome assembled-molecule total-length 30582302 Primary Assembly 8 Chromosome assembled-molecule ungapped-length 30582302 Primary Assembly 8 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 8 Chromosome assembled-molecule scaffold-N50 30582302 Primary Assembly 8 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 8 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 8 Chromosome assembled-molecule gc-perc 34.5 Primary Assembly 8 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 8 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 9 Chromosome all total-length 33998288 Primary Assembly 9 Chromosome all ungapped-length 33998288 Primary Assembly 9 Chromosome all scaffold-count 1 Primary Assembly 9 Chromosome all scaffold-N50 33998288 Primary Assembly 9 Chromosome all spanned-gaps 0 Primary Assembly 9 Chromosome all unspanned-gaps 0 Primary Assembly 9 Chromosome all gc-perc 34 Primary Assembly 9 Chromosome assembled-molecule total-length 33998288 Primary Assembly 9 Chromosome assembled-molecule ungapped-length 33998288 Primary Assembly 9 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 9 Chromosome assembled-molecule scaffold-N50 33998288 Primary Assembly 9 Chromosome assembled-molecule spanned-gaps 0 Primary Assembly 9 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 9 Chromosome assembled-molecule gc-perc 34 Primary Assembly 9 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 9 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold unspanned-gaps 0 non-nuclear all all all total-length 801035 non-nuclear all all all ungapped-length 801035 non-nuclear all all all scaffold-count 2 non-nuclear all all all scaffold-N50 640906 non-nuclear all all all spanned-gaps 0 non-nuclear all all all unspanned-gaps 0 non-nuclear all all all gc-perc 43 non-nuclear all all assembled-molecule total-length 801035 non-nuclear all all assembled-molecule ungapped-length 801035 non-nuclear all all assembled-molecule scaffold-count 2 non-nuclear all all assembled-molecule scaffold-N50 640906 non-nuclear all all assembled-molecule spanned-gaps 0 non-nuclear all all assembled-molecule unspanned-gaps 0 non-nuclear all all assembled-molecule gc-perc 43 non-nuclear all all unlocalized-scaffold total-length 0 non-nuclear all all unlocalized-scaffold ungapped-length 0 non-nuclear all all unlocalized-scaffold scaffold-count 0 non-nuclear all all unlocalized-scaffold scaffold-N50 0 non-nuclear all all unlocalized-scaffold spanned-gaps 0 non-nuclear all all unlocalized-scaffold unspanned-gaps 0 non-nuclear MT Mitochondrion all total-length 640906 non-nuclear MT Mitochondrion all ungapped-length 640906 non-nuclear MT Mitochondrion all scaffold-count 1 non-nuclear MT Mitochondrion all scaffold-N50 640906 non-nuclear MT Mitochondrion all spanned-gaps 0 non-nuclear MT Mitochondrion all unspanned-gaps 0 non-nuclear MT Mitochondrion all gc-perc 44 non-nuclear MT Mitochondrion assembled-molecule total-length 640906 non-nuclear MT Mitochondrion assembled-molecule ungapped-length 640906 non-nuclear MT Mitochondrion assembled-molecule scaffold-count 1 non-nuclear MT Mitochondrion assembled-molecule scaffold-N50 640906 non-nuclear MT Mitochondrion assembled-molecule spanned-gaps 0 non-nuclear MT Mitochondrion assembled-molecule unspanned-gaps 0 non-nuclear MT Mitochondrion assembled-molecule gc-perc 44 non-nuclear MT Mitochondrion unlocalized-scaffold total-length 0 non-nuclear MT Mitochondrion unlocalized-scaffold ungapped-length 0 non-nuclear MT Mitochondrion unlocalized-scaffold scaffold-count 0 non-nuclear MT Mitochondrion unlocalized-scaffold scaffold-N50 0 non-nuclear MT Mitochondrion unlocalized-scaffold spanned-gaps 0 non-nuclear MT Mitochondrion unlocalized-scaffold unspanned-gaps 0 non-nuclear Pltd Chloroplast all total-length 160129 non-nuclear Pltd Chloroplast all ungapped-length 160129 non-nuclear Pltd Chloroplast all scaffold-count 1 non-nuclear Pltd Chloroplast all scaffold-N50 160129 non-nuclear Pltd Chloroplast all spanned-gaps 0 non-nuclear Pltd Chloroplast all unspanned-gaps 0 non-nuclear Pltd Chloroplast all gc-perc 38.5 non-nuclear Pltd Chloroplast assembled-molecule total-length 160129 non-nuclear Pltd Chloroplast assembled-molecule ungapped-length 160129 non-nuclear Pltd Chloroplast assembled-molecule scaffold-count 1 non-nuclear Pltd Chloroplast assembled-molecule scaffold-N50 160129 non-nuclear Pltd Chloroplast assembled-molecule spanned-gaps 0 non-nuclear Pltd Chloroplast assembled-molecule unspanned-gaps 0 non-nuclear Pltd Chloroplast assembled-molecule gc-perc 38.5 non-nuclear Pltd Chloroplast unlocalized-scaffold total-length 0 non-nuclear Pltd Chloroplast unlocalized-scaffold ungapped-length 0 non-nuclear Pltd Chloroplast unlocalized-scaffold scaffold-count 0 non-nuclear Pltd Chloroplast unlocalized-scaffold scaffold-N50 0 non-nuclear Pltd Chloroplast unlocalized-scaffold spanned-gaps 0 non-nuclear Pltd Chloroplast unlocalized-scaffold unspanned-gaps 0