# Assembly Statistics Report # Assembly name: ASM2240510v1 # Organism name: Aristolochia contorta (bei ma dou ling) # Isolate: Aco_MBG_1 # Taxid: 266420 # BioSample: SAMN19718743 # BioProject: PRJNA738351 # Submitter: None # Date: 2022-03-04 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAHZSQ01 # Assembly method: Canu v. March-2019; wtbdg2 v. March-2019; smartdenovo v. March-2019 # Expected final version: yes # Genome coverage: 183.0x # Sequencing technology: Oxford Nanopore PromethION; Illumina HiSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_022405105.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_022405175.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # gc-perc gc-count/atgc-count as percentage # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 210540771 all all all all spanned-gaps 140 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 84 all all all all scaffold-N50 30347173 all all all all scaffold-L50 4 all all all all scaffold-N75 26145698 all all all all scaffold-N90 19489044 all all all all contig-count 224 all all all all contig-N50 2315928 all all all all contig-L50 21 all all all all total-gap-length 14000 all all all all molecule-count 7 all all all all top-level-count 84 all all all all component-count 84 all all all all gc-perc 39.5 Primary Assembly all all all total-length 210540771 Primary Assembly all all all ungapped-length 210526771 Primary Assembly all all all scaffold-count 84 Primary Assembly all all all scaffold-N50 30347173 Primary Assembly all all all spanned-gaps 140 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all all gc-perc 39.5 Primary Assembly all all assembled-molecule total-length 198543466 Primary Assembly all all assembled-molecule ungapped-length 198529466 Primary Assembly all all assembled-molecule scaffold-count 7 Primary Assembly all all assembled-molecule scaffold-N50 31425943 Primary Assembly all all assembled-molecule spanned-gaps 140 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all assembled-molecule gc-perc 39.5 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 11997305 Primary Assembly na na unplaced-scaffold ungapped-length 11997305 Primary Assembly na na unplaced-scaffold scaffold-count 77 Primary Assembly na na unplaced-scaffold scaffold-N50 165492 Primary Assembly na na unplaced-scaffold spanned-gaps 0 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold gc-perc 41 Primary Assembly LG01 Linkage Group all total-length 31425943 Primary Assembly LG01 Linkage Group all ungapped-length 31424943 Primary Assembly LG01 Linkage Group all scaffold-count 1 Primary Assembly LG01 Linkage Group all scaffold-N50 31425943 Primary Assembly LG01 Linkage Group all spanned-gaps 10 Primary Assembly LG01 Linkage Group all unspanned-gaps 0 Primary Assembly LG01 Linkage Group all gc-perc 39.5 Primary Assembly LG01 Linkage Group assembled-molecule total-length 31425943 Primary Assembly LG01 Linkage Group assembled-molecule ungapped-length 31424943 Primary Assembly LG01 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG01 Linkage Group assembled-molecule scaffold-N50 31425943 Primary Assembly LG01 Linkage Group assembled-molecule spanned-gaps 10 Primary Assembly LG01 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG01 Linkage Group assembled-molecule gc-perc 39.5 Primary Assembly LG01 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG01 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG01 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG01 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG01 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG01 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG02 Linkage Group all total-length 38743438 Primary Assembly LG02 Linkage Group all ungapped-length 38740438 Primary Assembly LG02 Linkage Group all scaffold-count 1 Primary Assembly LG02 Linkage Group all scaffold-N50 38743438 Primary Assembly LG02 Linkage Group all spanned-gaps 30 Primary Assembly LG02 Linkage Group all unspanned-gaps 0 Primary Assembly LG02 Linkage Group all gc-perc 39.5 Primary Assembly LG02 Linkage Group assembled-molecule total-length 38743438 Primary Assembly LG02 Linkage Group assembled-molecule ungapped-length 38740438 Primary Assembly LG02 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG02 Linkage Group assembled-molecule scaffold-N50 38743438 Primary Assembly LG02 Linkage Group assembled-molecule spanned-gaps 30 Primary Assembly LG02 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG02 Linkage Group assembled-molecule gc-perc 39.5 Primary Assembly LG02 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG02 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG02 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG02 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG02 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG02 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG03 Linkage Group all total-length 31593386 Primary Assembly LG03 Linkage Group all ungapped-length 31589686 Primary Assembly LG03 Linkage Group all scaffold-count 1 Primary Assembly LG03 Linkage Group all scaffold-N50 31593386 Primary Assembly LG03 Linkage Group all spanned-gaps 37 Primary Assembly LG03 Linkage Group all unspanned-gaps 0 Primary Assembly LG03 Linkage Group all gc-perc 39 Primary Assembly LG03 Linkage Group assembled-molecule total-length 31593386 Primary Assembly LG03 Linkage Group assembled-molecule ungapped-length 31589686 Primary Assembly LG03 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG03 Linkage Group assembled-molecule scaffold-N50 31593386 Primary Assembly LG03 Linkage Group assembled-molecule spanned-gaps 37 Primary Assembly LG03 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG03 Linkage Group assembled-molecule gc-perc 39 Primary Assembly LG03 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG03 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG03 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG03 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG03 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG03 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG04 Linkage Group all total-length 30347173 Primary Assembly LG04 Linkage Group all ungapped-length 30345073 Primary Assembly LG04 Linkage Group all scaffold-count 1 Primary Assembly LG04 Linkage Group all scaffold-N50 30347173 Primary Assembly LG04 Linkage Group all spanned-gaps 21 Primary Assembly LG04 Linkage Group all unspanned-gaps 0 Primary Assembly LG04 Linkage Group all gc-perc 39.5 Primary Assembly LG04 Linkage Group assembled-molecule total-length 30347173 Primary Assembly LG04 Linkage Group assembled-molecule ungapped-length 30345073 Primary Assembly LG04 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG04 Linkage Group assembled-molecule scaffold-N50 30347173 Primary Assembly LG04 Linkage Group assembled-molecule spanned-gaps 21 Primary Assembly LG04 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG04 Linkage Group assembled-molecule gc-perc 39.5 Primary Assembly LG04 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG04 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG04 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG04 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG04 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG04 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG05 Linkage Group all total-length 26145698 Primary Assembly LG05 Linkage Group all ungapped-length 26144098 Primary Assembly LG05 Linkage Group all scaffold-count 1 Primary Assembly LG05 Linkage Group all scaffold-N50 26145698 Primary Assembly LG05 Linkage Group all spanned-gaps 16 Primary Assembly LG05 Linkage Group all unspanned-gaps 0 Primary Assembly LG05 Linkage Group all gc-perc 39.5 Primary Assembly LG05 Linkage Group assembled-molecule total-length 26145698 Primary Assembly LG05 Linkage Group assembled-molecule ungapped-length 26144098 Primary Assembly LG05 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG05 Linkage Group assembled-molecule scaffold-N50 26145698 Primary Assembly LG05 Linkage Group assembled-molecule spanned-gaps 16 Primary Assembly LG05 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG05 Linkage Group assembled-molecule gc-perc 39.5 Primary Assembly LG05 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG05 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG05 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG05 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG05 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG05 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG06 Linkage Group all total-length 19489044 Primary Assembly LG06 Linkage Group all ungapped-length 19487744 Primary Assembly LG06 Linkage Group all scaffold-count 1 Primary Assembly LG06 Linkage Group all scaffold-N50 19489044 Primary Assembly LG06 Linkage Group all spanned-gaps 13 Primary Assembly LG06 Linkage Group all unspanned-gaps 0 Primary Assembly LG06 Linkage Group all gc-perc 39 Primary Assembly LG06 Linkage Group assembled-molecule total-length 19489044 Primary Assembly LG06 Linkage Group assembled-molecule ungapped-length 19487744 Primary Assembly LG06 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG06 Linkage Group assembled-molecule scaffold-N50 19489044 Primary Assembly LG06 Linkage Group assembled-molecule spanned-gaps 13 Primary Assembly LG06 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG06 Linkage Group assembled-molecule gc-perc 39 Primary Assembly LG06 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG06 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG06 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG06 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG06 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG06 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG07 Linkage Group all total-length 20798784 Primary Assembly LG07 Linkage Group all ungapped-length 20797484 Primary Assembly LG07 Linkage Group all scaffold-count 1 Primary Assembly LG07 Linkage Group all scaffold-N50 20798784 Primary Assembly LG07 Linkage Group all spanned-gaps 13 Primary Assembly LG07 Linkage Group all unspanned-gaps 0 Primary Assembly LG07 Linkage Group all gc-perc 39 Primary Assembly LG07 Linkage Group assembled-molecule total-length 20798784 Primary Assembly LG07 Linkage Group assembled-molecule ungapped-length 20797484 Primary Assembly LG07 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG07 Linkage Group assembled-molecule scaffold-N50 20798784 Primary Assembly LG07 Linkage Group assembled-molecule spanned-gaps 13 Primary Assembly LG07 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG07 Linkage Group assembled-molecule gc-perc 39 Primary Assembly LG07 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG07 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG07 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG07 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG07 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG07 Linkage Group unlocalized-scaffold unspanned-gaps 0