# Assembly Statistics Report # Assembly name: Mru_ZJU_2 # Organism name: Morella rubra (eudicots) # Infraspecific name: cultivar=Y2012-145 # Sex: female # Taxid: 262757 # BioSample: SAMN07510764 # BioProject: PRJNA398601 # Submitter: Zhejiang University # Date: 2020-09-23 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: RXIC02 # Assembly method: SOAPdenovo v. 2.04.4; FALCON v. 1.7.4; HABOT v. 1.2 # Expected final version: yes # Genome coverage: 293.0x # Sequencing technology: Illumina; PacBio # RefSeq category: Representative Genome # GenBank assembly accession: GCA_003952965.2 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_003952995.2 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # gc-perc gc-count/atgc-count as percentage # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 313008583 all all all all spanned-gaps 2914 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 511 all all all all scaffold-N50 35745824 all all all all scaffold-L50 5 all all all all scaffold-N75 31026390 all all all all scaffold-N90 588298 all all all all contig-count 3425 all all all all contig-N50 192611 all all all all contig-L50 449 all all all all total-gap-length 6452806 all all all all molecule-count 8 all all all all top-level-count 511 all all all all component-count 511 all all all all gc-perc 37.5 Primary Assembly all all all total-length 313008583 Primary Assembly all all all ungapped-length 306555777 Primary Assembly all all all scaffold-count 511 Primary Assembly all all all scaffold-N50 35745824 Primary Assembly all all all spanned-gaps 2914 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all all gc-perc 37.5 Primary Assembly all all assembled-molecule total-length 279684884 Primary Assembly all all assembled-molecule ungapped-length 273803882 Primary Assembly all all assembled-molecule scaffold-count 8 Primary Assembly all all assembled-molecule scaffold-N50 35912157 Primary Assembly all all assembled-molecule spanned-gaps 2618 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all assembled-molecule gc-perc 37.5 Primary Assembly all all unlocalized-scaffold total-length 4468969 Primary Assembly all all unlocalized-scaffold ungapped-length 4332320 Primary Assembly all all unlocalized-scaffold scaffold-count 18 Primary Assembly all all unlocalized-scaffold scaffold-N50 411518 Primary Assembly all all unlocalized-scaffold spanned-gaps 50 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold gc-perc 37.5 Primary Assembly na na unplaced-scaffold total-length 28854730 Primary Assembly na na unplaced-scaffold ungapped-length 28419575 Primary Assembly na na unplaced-scaffold scaffold-count 485 Primary Assembly na na unplaced-scaffold scaffold-N50 169170 Primary Assembly na na unplaced-scaffold spanned-gaps 246 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold gc-perc 37.5 Primary Assembly 1 Chromosome all total-length 38811921 Primary Assembly 1 Chromosome all ungapped-length 37760646 Primary Assembly 1 Chromosome all scaffold-count 5 Primary Assembly 1 Chromosome all scaffold-N50 38479969 Primary Assembly 1 Chromosome all spanned-gaps 487 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome all gc-perc 37.5 Primary Assembly 1 Chromosome assembled-molecule total-length 38479969 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 37429331 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 38479969 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 485 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule gc-perc 37.5 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 331952 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 331315 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 4 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 171397 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 2 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold gc-perc 37 Primary Assembly 2 Chromosome all total-length 39702439 Primary Assembly 2 Chromosome all ungapped-length 38777516 Primary Assembly 2 Chromosome all scaffold-count 2 Primary Assembly 2 Chromosome all scaffold-N50 39290921 Primary Assembly 2 Chromosome all spanned-gaps 433 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome all gc-perc 37.5 Primary Assembly 2 Chromosome assembled-molecule total-length 39290921 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 38367497 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 39290921 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 431 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule gc-perc 37.5 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 411518 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 410019 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 1 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 411518 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 2 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold gc-perc 37 Primary Assembly 3 Chromosome all total-length 35912157 Primary Assembly 3 Chromosome all ungapped-length 35314892 Primary Assembly 3 Chromosome all scaffold-count 1 Primary Assembly 3 Chromosome all scaffold-N50 35912157 Primary Assembly 3 Chromosome all spanned-gaps 230 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome all gc-perc 38 Primary Assembly 3 Chromosome assembled-molecule total-length 35912157 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 35314892 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 35912157 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 230 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule gc-perc 38 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 30350191 Primary Assembly 4 Chromosome all ungapped-length 29678770 Primary Assembly 4 Chromosome all scaffold-count 4 Primary Assembly 4 Chromosome all scaffold-N50 28442674 Primary Assembly 4 Chromosome all spanned-gaps 307 Primary Assembly 4 Chromosome all unspanned-gaps 0 Primary Assembly 4 Chromosome all gc-perc 37.5 Primary Assembly 4 Chromosome assembled-molecule total-length 28442674 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 27875109 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 28442674 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 282 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule gc-perc 37.5 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 1907517 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 1803661 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 3 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 1302124 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 25 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold gc-perc 37.5 Primary Assembly 5 Chromosome all total-length 36107496 Primary Assembly 5 Chromosome all ungapped-length 35411760 Primary Assembly 5 Chromosome all scaffold-count 4 Primary Assembly 5 Chromosome all scaffold-N50 35745824 Primary Assembly 5 Chromosome all spanned-gaps 275 Primary Assembly 5 Chromosome all unspanned-gaps 0 Primary Assembly 5 Chromosome all gc-perc 37.5 Primary Assembly 5 Chromosome assembled-molecule total-length 35745824 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 35054143 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 35745824 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 270 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule gc-perc 37.5 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 361672 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 357617 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 3 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 275057 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 5 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold gc-perc 38 Primary Assembly 6 Chromosome all total-length 31834904 Primary Assembly 6 Chromosome all ungapped-length 30998095 Primary Assembly 6 Chromosome all scaffold-count 5 Primary Assembly 6 Chromosome all scaffold-N50 31026390 Primary Assembly 6 Chromosome all spanned-gaps 333 Primary Assembly 6 Chromosome all unspanned-gaps 0 Primary Assembly 6 Chromosome all gc-perc 38 Primary Assembly 6 Chromosome assembled-molecule total-length 31026390 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 30206440 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 31026390 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 324 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule gc-perc 38 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 808514 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 791655 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 4 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 248706 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 9 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold gc-perc 36.5 Primary Assembly 7 Chromosome all total-length 39793947 Primary Assembly 7 Chromosome all ungapped-length 39239663 Primary Assembly 7 Chromosome all scaffold-count 3 Primary Assembly 7 Chromosome all scaffold-N50 39213461 Primary Assembly 7 Chromosome all spanned-gaps 247 Primary Assembly 7 Chromosome all unspanned-gaps 0 Primary Assembly 7 Chromosome all gc-perc 38 Primary Assembly 7 Chromosome assembled-molecule total-length 39213461 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 38660916 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 39213461 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 241 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule gc-perc 38 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 580486 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 578747 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 2 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 392957 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 6 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold gc-perc 37.5 Primary Assembly 8 Chromosome all total-length 31640798 Primary Assembly 8 Chromosome all ungapped-length 30954860 Primary Assembly 8 Chromosome all scaffold-count 2 Primary Assembly 8 Chromosome all scaffold-N50 31573488 Primary Assembly 8 Chromosome all spanned-gaps 356 Primary Assembly 8 Chromosome all unspanned-gaps 0 Primary Assembly 8 Chromosome all gc-perc 38 Primary Assembly 8 Chromosome assembled-molecule total-length 31573488 Primary Assembly 8 Chromosome assembled-molecule ungapped-length 30895554 Primary Assembly 8 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 8 Chromosome assembled-molecule scaffold-N50 31573488 Primary Assembly 8 Chromosome assembled-molecule spanned-gaps 355 Primary Assembly 8 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 8 Chromosome assembled-molecule gc-perc 38 Primary Assembly 8 Chromosome unlocalized-scaffold total-length 67310 Primary Assembly 8 Chromosome unlocalized-scaffold ungapped-length 59306 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-count 1 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-N50 67310 Primary Assembly 8 Chromosome unlocalized-scaffold spanned-gaps 1 Primary Assembly 8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold gc-perc 36.5