# Assembly Statistics Report # Assembly name: CAF_Sgla_1.0 # Organism name: Sindora glabra (eudicots) # Infraspecific name: ecotype=Hainan # Taxid: 2590455 # BioSample: SAMN20299044 # BioProject: PRJNA747876 # Submitter: Chinese Academy of Forestry # Date: 2021-10-05 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAIUCU01 # Assembly method: FALCON v. 0.3.0 # Expected final version: no # Genome coverage: 161.0x # Sequencing technology: PacBio Sequel # RefSeq category: Representative Genome # GenBank assembly accession: GCA_020226215.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_020226575.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 1113920175 all all all all spanned-gaps 1145 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 361 all all all all scaffold-N50 84872623 all all all all scaffold-L50 6 all all all all scaffold-N75 76993406 all all all all scaffold-N90 75144154 all all all all contig-count 1506 all all all all contig-N50 1241048 all all all all contig-L50 272 all all all all total-gap-length 128261 all all all all molecule-count 12 all all all all top-level-count 361 all all all all component-count 361 Primary Assembly all all all total-length 1113920175 Primary Assembly all all all ungapped-length 1113791914 Primary Assembly all all all scaffold-count 361 Primary Assembly all all all scaffold-N50 84872623 Primary Assembly all all all spanned-gaps 1145 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all assembled-molecule total-length 1091722351 Primary Assembly all all assembled-molecule ungapped-length 1091594559 Primary Assembly all all assembled-molecule scaffold-count 12 Primary Assembly all all assembled-molecule scaffold-N50 84872623 Primary Assembly all all assembled-molecule spanned-gaps 1142 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 22197824 Primary Assembly na na unplaced-scaffold ungapped-length 22197355 Primary Assembly na na unplaced-scaffold scaffold-count 349 Primary Assembly na na unplaced-scaffold scaffold-N50 88901 Primary Assembly na na unplaced-scaffold spanned-gaps 3 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly 1 Chromosome all total-length 136071090 Primary Assembly 1 Chromosome all ungapped-length 136056308 Primary Assembly 1 Chromosome all scaffold-count 1 Primary Assembly 1 Chromosome all scaffold-N50 136071090 Primary Assembly 1 Chromosome all spanned-gaps 140 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule total-length 136071090 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 136056308 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 136071090 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 140 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 116487353 Primary Assembly 2 Chromosome all ungapped-length 116469807 Primary Assembly 2 Chromosome all scaffold-count 1 Primary Assembly 2 Chromosome all scaffold-N50 116487353 Primary Assembly 2 Chromosome all spanned-gaps 135 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule total-length 116487353 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 116469807 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 116487353 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 135 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 109186524 Primary Assembly 3 Chromosome all ungapped-length 109175413 Primary Assembly 3 Chromosome all scaffold-count 1 Primary Assembly 3 Chromosome all scaffold-N50 109186524 Primary Assembly 3 Chromosome all spanned-gaps 109 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule total-length 109186524 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 109175413 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 109186524 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 109 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 91914064 Primary Assembly 4 Chromosome all ungapped-length 91903265 Primary Assembly 4 Chromosome all scaffold-count 1 Primary Assembly 4 Chromosome all scaffold-N50 91914064 Primary Assembly 4 Chromosome all spanned-gaps 105 Primary Assembly 4 Chromosome all unspanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule total-length 91914064 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 91903265 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 91914064 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 105 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 88658134 Primary Assembly 5 Chromosome all ungapped-length 88649073 Primary Assembly 5 Chromosome all scaffold-count 1 Primary Assembly 5 Chromosome all scaffold-N50 88658134 Primary Assembly 5 Chromosome all spanned-gaps 87 Primary Assembly 5 Chromosome all unspanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule total-length 88658134 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 88649073 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 88658134 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 87 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 84872623 Primary Assembly 6 Chromosome all ungapped-length 84863545 Primary Assembly 6 Chromosome all scaffold-count 1 Primary Assembly 6 Chromosome all scaffold-N50 84872623 Primary Assembly 6 Chromosome all spanned-gaps 88 Primary Assembly 6 Chromosome all unspanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule total-length 84872623 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 84863545 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 84872623 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 88 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 83373435 Primary Assembly 7 Chromosome all ungapped-length 83365566 Primary Assembly 7 Chromosome all scaffold-count 1 Primary Assembly 7 Chromosome all scaffold-N50 83373435 Primary Assembly 7 Chromosome all spanned-gaps 78 Primary Assembly 7 Chromosome all unspanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule total-length 83373435 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 83365566 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 83373435 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 78 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 8 Chromosome all total-length 81990953 Primary Assembly 8 Chromosome all ungapped-length 81983322 Primary Assembly 8 Chromosome all scaffold-count 1 Primary Assembly 8 Chromosome all scaffold-N50 81990953 Primary Assembly 8 Chromosome all spanned-gaps 76 Primary Assembly 8 Chromosome all unspanned-gaps 0 Primary Assembly 8 Chromosome assembled-molecule total-length 81990953 Primary Assembly 8 Chromosome assembled-molecule ungapped-length 81983322 Primary Assembly 8 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 8 Chromosome assembled-molecule scaffold-N50 81990953 Primary Assembly 8 Chromosome assembled-molecule spanned-gaps 76 Primary Assembly 8 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 8 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 9 Chromosome all total-length 76993406 Primary Assembly 9 Chromosome all ungapped-length 76984402 Primary Assembly 9 Chromosome all scaffold-count 1 Primary Assembly 9 Chromosome all scaffold-N50 76993406 Primary Assembly 9 Chromosome all spanned-gaps 73 Primary Assembly 9 Chromosome all unspanned-gaps 0 Primary Assembly 9 Chromosome assembled-molecule total-length 76993406 Primary Assembly 9 Chromosome assembled-molecule ungapped-length 76984402 Primary Assembly 9 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 9 Chromosome assembled-molecule scaffold-N50 76993406 Primary Assembly 9 Chromosome assembled-molecule spanned-gaps 73 Primary Assembly 9 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 9 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 10 Chromosome all total-length 75912673 Primary Assembly 10 Chromosome all ungapped-length 75904546 Primary Assembly 10 Chromosome all scaffold-count 1 Primary Assembly 10 Chromosome all scaffold-N50 75912673 Primary Assembly 10 Chromosome all spanned-gaps 81 Primary Assembly 10 Chromosome all unspanned-gaps 0 Primary Assembly 10 Chromosome assembled-molecule total-length 75912673 Primary Assembly 10 Chromosome assembled-molecule ungapped-length 75904546 Primary Assembly 10 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 10 Chromosome assembled-molecule scaffold-N50 75912673 Primary Assembly 10 Chromosome assembled-molecule spanned-gaps 81 Primary Assembly 10 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 10 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 11 Chromosome all total-length 75144154 Primary Assembly 11 Chromosome all ungapped-length 75135497 Primary Assembly 11 Chromosome all scaffold-count 1 Primary Assembly 11 Chromosome all scaffold-N50 75144154 Primary Assembly 11 Chromosome all spanned-gaps 86 Primary Assembly 11 Chromosome all unspanned-gaps 0 Primary Assembly 11 Chromosome assembled-molecule total-length 75144154 Primary Assembly 11 Chromosome assembled-molecule ungapped-length 75135497 Primary Assembly 11 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 11 Chromosome assembled-molecule scaffold-N50 75144154 Primary Assembly 11 Chromosome assembled-molecule spanned-gaps 86 Primary Assembly 11 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 11 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 11 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 11 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 12 Chromosome all total-length 71117942 Primary Assembly 12 Chromosome all ungapped-length 71103815 Primary Assembly 12 Chromosome all scaffold-count 1 Primary Assembly 12 Chromosome all scaffold-N50 71117942 Primary Assembly 12 Chromosome all spanned-gaps 84 Primary Assembly 12 Chromosome all unspanned-gaps 0 Primary Assembly 12 Chromosome assembled-molecule total-length 71117942 Primary Assembly 12 Chromosome assembled-molecule ungapped-length 71103815 Primary Assembly 12 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 12 Chromosome assembled-molecule scaffold-N50 71117942 Primary Assembly 12 Chromosome assembled-molecule spanned-gaps 84 Primary Assembly 12 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 12 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 12 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 12 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 12 Chromosome unlocalized-scaffold unspanned-gaps 0