# Assembly Statistics Report # Assembly name: UMC_Scan_2.0 # Organism name: Syntrichia caninervis (mosses) # Infraspecific name: ecotype=Biocrust # Isolate: Stark NV-107 # Sex: female # Taxid: 200751 # BioSample: SAMN14847761 # BioProject: PRJNA630883 # Submitter: University of Misosuri # Date: 2020-12-17 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JADDRJ01 # Assembly method: HiRise (Dovetail) v. 04-2017 # Expected final version: yes # Genome coverage: 39000.0x # Sequencing technology: Illumina HiSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_016097705.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_016097775.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 329824126 all all all all spanned-gaps 21515 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 2661 all all all all scaffold-N50 21898694 all all all all scaffold-L50 6 all all all all scaffold-N75 17473668 all all all all scaffold-N90 6843710 all all all all contig-count 24176 all all all all contig-N50 31327 all all all all contig-L50 2637 all all all all total-gap-length 19366550 all all all all molecule-count 13 all all all all top-level-count 2661 all all all all component-count 2661 Primary Assembly all all all total-length 329824126 Primary Assembly all all all ungapped-length 310457576 Primary Assembly all all all scaffold-count 2661 Primary Assembly all all all scaffold-N50 21898694 Primary Assembly all all all spanned-gaps 21515 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all assembled-molecule total-length 292192561 Primary Assembly all all assembled-molecule ungapped-length 273172036 Primary Assembly all all assembled-molecule scaffold-count 13 Primary Assembly all all assembled-molecule scaffold-N50 21898694 Primary Assembly all all assembled-molecule spanned-gaps 20293 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 37631565 Primary Assembly na na unplaced-scaffold ungapped-length 37285540 Primary Assembly na na unplaced-scaffold scaffold-count 2648 Primary Assembly na na unplaced-scaffold scaffold-N50 3884825 Primary Assembly na na unplaced-scaffold spanned-gaps 1222 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly 1 Chromosome all total-length 14942484 Primary Assembly 1 Chromosome all ungapped-length 14007773 Primary Assembly 1 Chromosome all scaffold-count 1 Primary Assembly 1 Chromosome all scaffold-N50 14942484 Primary Assembly 1 Chromosome all spanned-gaps 983 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule total-length 14942484 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 14007773 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 14942484 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 983 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 16785435 Primary Assembly 2 Chromosome all ungapped-length 15617315 Primary Assembly 2 Chromosome all scaffold-count 1 Primary Assembly 2 Chromosome all scaffold-N50 16785435 Primary Assembly 2 Chromosome all spanned-gaps 1221 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule total-length 16785435 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 15617315 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 16785435 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 1221 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 17473668 Primary Assembly 3 Chromosome all ungapped-length 16339289 Primary Assembly 3 Chromosome all scaffold-count 1 Primary Assembly 3 Chromosome all scaffold-N50 17473668 Primary Assembly 3 Chromosome all spanned-gaps 1216 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule total-length 17473668 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 16339289 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 17473668 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 1216 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 18468480 Primary Assembly 4 Chromosome all ungapped-length 17218100 Primary Assembly 4 Chromosome all scaffold-count 1 Primary Assembly 4 Chromosome all scaffold-N50 18468480 Primary Assembly 4 Chromosome all spanned-gaps 1334 Primary Assembly 4 Chromosome all unspanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule total-length 18468480 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 17218100 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 18468480 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 1334 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 18825985 Primary Assembly 5 Chromosome all ungapped-length 17589304 Primary Assembly 5 Chromosome all scaffold-count 1 Primary Assembly 5 Chromosome all scaffold-N50 18825985 Primary Assembly 5 Chromosome all spanned-gaps 1361 Primary Assembly 5 Chromosome all unspanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule total-length 18825985 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 17589304 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 18825985 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 1361 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 19449710 Primary Assembly 6 Chromosome all ungapped-length 18290322 Primary Assembly 6 Chromosome all scaffold-count 1 Primary Assembly 6 Chromosome all scaffold-N50 19449710 Primary Assembly 6 Chromosome all spanned-gaps 1227 Primary Assembly 6 Chromosome all unspanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule total-length 19449710 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 18290322 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 19449710 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 1227 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 20458921 Primary Assembly 7 Chromosome all ungapped-length 19211491 Primary Assembly 7 Chromosome all scaffold-count 1 Primary Assembly 7 Chromosome all scaffold-N50 20458921 Primary Assembly 7 Chromosome all spanned-gaps 1335 Primary Assembly 7 Chromosome all unspanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule total-length 20458921 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 19211491 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 20458921 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 1335 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 8 Chromosome all total-length 21898694 Primary Assembly 8 Chromosome all ungapped-length 20358851 Primary Assembly 8 Chromosome all scaffold-count 1 Primary Assembly 8 Chromosome all scaffold-N50 21898694 Primary Assembly 8 Chromosome all spanned-gaps 1636 Primary Assembly 8 Chromosome all unspanned-gaps 0 Primary Assembly 8 Chromosome assembled-molecule total-length 21898694 Primary Assembly 8 Chromosome assembled-molecule ungapped-length 20358851 Primary Assembly 8 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 8 Chromosome assembled-molecule scaffold-N50 21898694 Primary Assembly 8 Chromosome assembled-molecule spanned-gaps 1636 Primary Assembly 8 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 8 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 9 Chromosome all total-length 23225248 Primary Assembly 9 Chromosome all ungapped-length 21779748 Primary Assembly 9 Chromosome all scaffold-count 1 Primary Assembly 9 Chromosome all scaffold-N50 23225248 Primary Assembly 9 Chromosome all spanned-gaps 1542 Primary Assembly 9 Chromosome all unspanned-gaps 0 Primary Assembly 9 Chromosome assembled-molecule total-length 23225248 Primary Assembly 9 Chromosome assembled-molecule ungapped-length 21779748 Primary Assembly 9 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 9 Chromosome assembled-molecule scaffold-N50 23225248 Primary Assembly 9 Chromosome assembled-molecule spanned-gaps 1542 Primary Assembly 9 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 9 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 10 Chromosome all total-length 25677578 Primary Assembly 10 Chromosome all ungapped-length 24046357 Primary Assembly 10 Chromosome all scaffold-count 1 Primary Assembly 10 Chromosome all scaffold-N50 25677578 Primary Assembly 10 Chromosome all spanned-gaps 1762 Primary Assembly 10 Chromosome all unspanned-gaps 0 Primary Assembly 10 Chromosome assembled-molecule total-length 25677578 Primary Assembly 10 Chromosome assembled-molecule ungapped-length 24046357 Primary Assembly 10 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 10 Chromosome assembled-molecule scaffold-N50 25677578 Primary Assembly 10 Chromosome assembled-molecule spanned-gaps 1762 Primary Assembly 10 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 10 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 11 Chromosome all total-length 25952692 Primary Assembly 11 Chromosome all ungapped-length 24325145 Primary Assembly 11 Chromosome all scaffold-count 1 Primary Assembly 11 Chromosome all scaffold-N50 25952692 Primary Assembly 11 Chromosome all spanned-gaps 1819 Primary Assembly 11 Chromosome all unspanned-gaps 0 Primary Assembly 11 Chromosome assembled-molecule total-length 25952692 Primary Assembly 11 Chromosome assembled-molecule ungapped-length 24325145 Primary Assembly 11 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 11 Chromosome assembled-molecule scaffold-N50 25952692 Primary Assembly 11 Chromosome assembled-molecule spanned-gaps 1819 Primary Assembly 11 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 11 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 11 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 11 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 12 Chromosome all total-length 31725073 Primary Assembly 12 Chromosome all ungapped-length 29822210 Primary Assembly 12 Chromosome all scaffold-count 1 Primary Assembly 12 Chromosome all scaffold-N50 31725073 Primary Assembly 12 Chromosome all spanned-gaps 2022 Primary Assembly 12 Chromosome all unspanned-gaps 0 Primary Assembly 12 Chromosome assembled-molecule total-length 31725073 Primary Assembly 12 Chromosome assembled-molecule ungapped-length 29822210 Primary Assembly 12 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 12 Chromosome assembled-molecule scaffold-N50 31725073 Primary Assembly 12 Chromosome assembled-molecule spanned-gaps 2022 Primary Assembly 12 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 12 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 12 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 12 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 12 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 13 Chromosome all total-length 37308593 Primary Assembly 13 Chromosome all ungapped-length 34566131 Primary Assembly 13 Chromosome all scaffold-count 1 Primary Assembly 13 Chromosome all scaffold-N50 37308593 Primary Assembly 13 Chromosome all spanned-gaps 2835 Primary Assembly 13 Chromosome all unspanned-gaps 0 Primary Assembly 13 Chromosome assembled-molecule total-length 37308593 Primary Assembly 13 Chromosome assembled-molecule ungapped-length 34566131 Primary Assembly 13 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 13 Chromosome assembled-molecule scaffold-N50 37308593 Primary Assembly 13 Chromosome assembled-molecule spanned-gaps 2835 Primary Assembly 13 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 13 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 13 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 13 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 13 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 13 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 13 Chromosome unlocalized-scaffold unspanned-gaps 0