# Assembly Statistics Report # Assembly name: ASM980555v1 # Organism name: Andrographis paniculata (eudicots) # Taxid: 175694 # BioSample: SAMN12076765 # BioProject: PRJNA549104 # Submitter: Guangxi Botanical Garden of Medicinal Plants # Date: 2019-12-27 # Assembly type: haploid # Release type: major # Assembly level: Contig # Genome representation: full # WGS project: WJEG01 # Assembly method: Hera v. January-2019 # Expected final version: yes # Genome coverage: 10.0x # Sequencing technology: PacBio Sequel # GenBank assembly accession: GCA_009805555.1 # RefSeq assembly accession: GCF_009805555.1 # RefSeq assembly and GenBank assemblies identical: no # Reporting on RefSeq assembly. # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_009805565.1 GCF_009805565.1 Primary Assembly ## GCF_025678005.1 non-nuclear # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # gc-perc gc-count/atgc-count as percentage # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 284458270 all all all all spanned-gaps 0 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all contig-count 271 all all all all contig-N50 5149272 all all all all contig-L50 22 all all all all total-gap-length 0 all all all all molecule-count 1 all all all all top-level-count 271 all all all all component-count 271 all all all all gc-perc 33.5 Primary Assembly all all all total-length 284308021 Primary Assembly all all all ungapped-length 284308021 Primary Assembly all all all spanned-gaps 0 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all all gc-perc 33.5 Primary Assembly all all assembled-molecule total-length 0 Primary Assembly all all assembled-molecule ungapped-length 0 Primary Assembly all all assembled-molecule spanned-gaps 0 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 284308021 Primary Assembly na na unplaced-scaffold ungapped-length 284308021 Primary Assembly na na unplaced-scaffold spanned-gaps 0 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold gc-perc 33.5 non-nuclear all all all total-length 150249 non-nuclear all all all ungapped-length 150249 non-nuclear all all all spanned-gaps 0 non-nuclear all all all unspanned-gaps 0 non-nuclear all all all gc-perc 38.5 non-nuclear all all assembled-molecule total-length 150249 non-nuclear all all assembled-molecule ungapped-length 150249 non-nuclear all all assembled-molecule spanned-gaps 0 non-nuclear all all assembled-molecule unspanned-gaps 0 non-nuclear all all assembled-molecule gc-perc 38.5 non-nuclear all all unlocalized-scaffold total-length 0 non-nuclear all all unlocalized-scaffold ungapped-length 0 non-nuclear all all unlocalized-scaffold spanned-gaps 0 non-nuclear all all unlocalized-scaffold unspanned-gaps 0 non-nuclear Pltd Chloroplast all total-length 150249 non-nuclear Pltd Chloroplast all ungapped-length 150249 non-nuclear Pltd Chloroplast all spanned-gaps 0 non-nuclear Pltd Chloroplast all unspanned-gaps 0 non-nuclear Pltd Chloroplast all gc-perc 38.5 non-nuclear Pltd Chloroplast assembled-molecule total-length 150249 non-nuclear Pltd Chloroplast assembled-molecule ungapped-length 150249 non-nuclear Pltd Chloroplast assembled-molecule spanned-gaps 0 non-nuclear Pltd Chloroplast assembled-molecule unspanned-gaps 0 non-nuclear Pltd Chloroplast assembled-molecule gc-perc 38.5 non-nuclear Pltd Chloroplast unlocalized-scaffold total-length 0 non-nuclear Pltd Chloroplast unlocalized-scaffold ungapped-length 0 non-nuclear Pltd Chloroplast unlocalized-scaffold spanned-gaps 0 non-nuclear Pltd Chloroplast unlocalized-scaffold unspanned-gaps 0