2017.7.7

These are the files associated with Camptotheca acuminata

###### Genome assembly #########
cac_genome_assembly_v2.4.fa:         Genome assembly of C. acuminata, containing 1,394 scaffold sequences


###### BUSCO result #########
BUSCO_result folder contains the output files from running BUSCO on the genome assembly


###### Genome annotation ########
# high-confidence genes
cac_hc_gene_models.gff3:                 Generic feature format file (gff3) of high-confidence genes in C. acuminata
cac_hc_gene_models.cdna.fa:            Transcript sequences (cDNA) of high-confidence genes in C. acuminata
cac_hc_gene_models.cds.fa:              Coding sequences (CDS) of high-confidence genes in C. acuminata
cac_hc_gene_models.pep.fa:             Protein sequences of high-confidence genes in C. acuminata
cac_hc_gene_models.func_anno.txt:   Functional annotation of high-confidence genes in C. acuminata


# representative models of high-confidence genes
cac_hc_gene_models.repr.gff3:         gff3 of representative models of high-confidence genes in C. acuminata
cac_hc_gene_models.repr.pep.fa:      Protein sequences of representative models of high-confidence genes in C. acuminata


###### Other ########
Camptotheca_gene_expression_matrix.xlsx:  Expression abundance of representative gene models
topoisomerase_ML_tree.nwk:                        Topoisomerase phylogenetic tree file in newick format     
Cac_scaffolds_v2.4.fa.repeatmasker.gff:       GFF file of the repeat-masked genome