# Assembly Statistics Report # Assembly name: O1 # Organism name: Leptodermis oblonga (eudicots) # Infraspecific name: ecotype=Beijing # Isolate: Rui-Jiang Wang 3514 # Taxid: 1616479 # BioSample: SAMN12214982 # BioProject: PRJNA552650 # Submitter: Chinese Academy of Sciences # Date: 2021-02-04 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: VMRK01 # Assembly method: WTDBG v. OCT-2018; CANU v. OCT-2018; LACHESIS v. NOV-2018 # Expected final version: yes # Genome coverage: 100.0x # Sequencing technology: PacBio RSII; Illumina # RefSeq category: Representative Genome # GenBank assembly accession: GCA_016801395.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_016801465.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 497295157 all all all all spanned-gaps 534 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 607 all all all all scaffold-N50 42511350 all all all all scaffold-L50 6 all all all all scaffold-N75 38609495 all all all all scaffold-N90 30252099 all all all all contig-count 1141 all all all all contig-N50 1477356 all all all all contig-L50 83 all all all all total-gap-length 53400 all all all all molecule-count 11 all all all all top-level-count 607 all all all all component-count 607 Primary Assembly all all all total-length 497295157 Primary Assembly all all all ungapped-length 497241757 Primary Assembly all all all scaffold-count 607 Primary Assembly all all all scaffold-N50 42511350 Primary Assembly all all all spanned-gaps 534 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all assembled-molecule total-length 466866250 Primary Assembly all all assembled-molecule ungapped-length 466812850 Primary Assembly all all assembled-molecule scaffold-count 11 Primary Assembly all all assembled-molecule scaffold-N50 43048114 Primary Assembly all all assembled-molecule spanned-gaps 534 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 30428907 Primary Assembly na na unplaced-scaffold ungapped-length 30428907 Primary Assembly na na unplaced-scaffold scaffold-count 596 Primary Assembly na na unplaced-scaffold scaffold-N50 61785 Primary Assembly na na unplaced-scaffold spanned-gaps 0 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly LG1 Linkage Group all total-length 47696299 Primary Assembly LG1 Linkage Group all ungapped-length 47691899 Primary Assembly LG1 Linkage Group all scaffold-count 1 Primary Assembly LG1 Linkage Group all scaffold-N50 47696299 Primary Assembly LG1 Linkage Group all spanned-gaps 44 Primary Assembly LG1 Linkage Group all unspanned-gaps 0 Primary Assembly LG1 Linkage Group assembled-molecule total-length 47696299 Primary Assembly LG1 Linkage Group assembled-molecule ungapped-length 47691899 Primary Assembly LG1 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG1 Linkage Group assembled-molecule scaffold-N50 47696299 Primary Assembly LG1 Linkage Group assembled-molecule spanned-gaps 44 Primary Assembly LG1 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG1 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG1 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG1 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG1 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG1 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG1 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG2 Linkage Group all total-length 34545269 Primary Assembly LG2 Linkage Group all ungapped-length 34542269 Primary Assembly LG2 Linkage Group all scaffold-count 1 Primary Assembly LG2 Linkage Group all scaffold-N50 34545269 Primary Assembly LG2 Linkage Group all spanned-gaps 30 Primary Assembly LG2 Linkage Group all unspanned-gaps 0 Primary Assembly LG2 Linkage Group assembled-molecule total-length 34545269 Primary Assembly LG2 Linkage Group assembled-molecule ungapped-length 34542269 Primary Assembly LG2 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG2 Linkage Group assembled-molecule scaffold-N50 34545269 Primary Assembly LG2 Linkage Group assembled-molecule spanned-gaps 30 Primary Assembly LG2 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG2 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG2 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG2 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG2 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG2 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG2 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG3 Linkage Group all total-length 43048114 Primary Assembly LG3 Linkage Group all ungapped-length 43041514 Primary Assembly LG3 Linkage Group all scaffold-count 1 Primary Assembly LG3 Linkage Group all scaffold-N50 43048114 Primary Assembly LG3 Linkage Group all spanned-gaps 66 Primary Assembly LG3 Linkage Group all unspanned-gaps 0 Primary Assembly LG3 Linkage Group assembled-molecule total-length 43048114 Primary Assembly LG3 Linkage Group assembled-molecule ungapped-length 43041514 Primary Assembly LG3 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG3 Linkage Group assembled-molecule scaffold-N50 43048114 Primary Assembly LG3 Linkage Group assembled-molecule spanned-gaps 66 Primary Assembly LG3 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG3 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG3 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG3 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG3 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG3 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG3 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG4 Linkage Group all total-length 30252099 Primary Assembly LG4 Linkage Group all ungapped-length 30249399 Primary Assembly LG4 Linkage Group all scaffold-count 1 Primary Assembly LG4 Linkage Group all scaffold-N50 30252099 Primary Assembly LG4 Linkage Group all spanned-gaps 27 Primary Assembly LG4 Linkage Group all unspanned-gaps 0 Primary Assembly LG4 Linkage Group assembled-molecule total-length 30252099 Primary Assembly LG4 Linkage Group assembled-molecule ungapped-length 30249399 Primary Assembly LG4 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG4 Linkage Group assembled-molecule scaffold-N50 30252099 Primary Assembly LG4 Linkage Group assembled-molecule spanned-gaps 27 Primary Assembly LG4 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG4 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG4 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG4 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG4 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG4 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG4 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG5 Linkage Group all total-length 49715541 Primary Assembly LG5 Linkage Group all ungapped-length 49708041 Primary Assembly LG5 Linkage Group all scaffold-count 1 Primary Assembly LG5 Linkage Group all scaffold-N50 49715541 Primary Assembly LG5 Linkage Group all spanned-gaps 75 Primary Assembly LG5 Linkage Group all unspanned-gaps 0 Primary Assembly LG5 Linkage Group assembled-molecule total-length 49715541 Primary Assembly LG5 Linkage Group assembled-molecule ungapped-length 49708041 Primary Assembly LG5 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG5 Linkage Group assembled-molecule scaffold-N50 49715541 Primary Assembly LG5 Linkage Group assembled-molecule spanned-gaps 75 Primary Assembly LG5 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG5 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG5 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG5 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG5 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG5 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG5 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG6 Linkage Group all total-length 48936555 Primary Assembly LG6 Linkage Group all ungapped-length 48931255 Primary Assembly LG6 Linkage Group all scaffold-count 1 Primary Assembly LG6 Linkage Group all scaffold-N50 48936555 Primary Assembly LG6 Linkage Group all spanned-gaps 53 Primary Assembly LG6 Linkage Group all unspanned-gaps 0 Primary Assembly LG6 Linkage Group assembled-molecule total-length 48936555 Primary Assembly LG6 Linkage Group assembled-molecule ungapped-length 48931255 Primary Assembly LG6 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG6 Linkage Group assembled-molecule scaffold-N50 48936555 Primary Assembly LG6 Linkage Group assembled-molecule spanned-gaps 53 Primary Assembly LG6 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG6 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG6 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG6 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG6 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG6 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG6 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG7 Linkage Group all total-length 52166248 Primary Assembly LG7 Linkage Group all ungapped-length 52160548 Primary Assembly LG7 Linkage Group all scaffold-count 1 Primary Assembly LG7 Linkage Group all scaffold-N50 52166248 Primary Assembly LG7 Linkage Group all spanned-gaps 57 Primary Assembly LG7 Linkage Group all unspanned-gaps 0 Primary Assembly LG7 Linkage Group assembled-molecule total-length 52166248 Primary Assembly LG7 Linkage Group assembled-molecule ungapped-length 52160548 Primary Assembly LG7 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG7 Linkage Group assembled-molecule scaffold-N50 52166248 Primary Assembly LG7 Linkage Group assembled-molecule spanned-gaps 57 Primary Assembly LG7 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG7 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG7 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG7 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG7 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG7 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG7 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG8 Linkage Group all total-length 39104347 Primary Assembly LG8 Linkage Group all ungapped-length 39100647 Primary Assembly LG8 Linkage Group all scaffold-count 1 Primary Assembly LG8 Linkage Group all scaffold-N50 39104347 Primary Assembly LG8 Linkage Group all spanned-gaps 37 Primary Assembly LG8 Linkage Group all unspanned-gaps 0 Primary Assembly LG8 Linkage Group assembled-molecule total-length 39104347 Primary Assembly LG8 Linkage Group assembled-molecule ungapped-length 39100647 Primary Assembly LG8 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG8 Linkage Group assembled-molecule scaffold-N50 39104347 Primary Assembly LG8 Linkage Group assembled-molecule spanned-gaps 37 Primary Assembly LG8 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG8 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG8 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG8 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG8 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG8 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG8 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG9 Linkage Group all total-length 42511350 Primary Assembly LG9 Linkage Group all ungapped-length 42506350 Primary Assembly LG9 Linkage Group all scaffold-count 1 Primary Assembly LG9 Linkage Group all scaffold-N50 42511350 Primary Assembly LG9 Linkage Group all spanned-gaps 50 Primary Assembly LG9 Linkage Group all unspanned-gaps 0 Primary Assembly LG9 Linkage Group assembled-molecule total-length 42511350 Primary Assembly LG9 Linkage Group assembled-molecule ungapped-length 42506350 Primary Assembly LG9 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG9 Linkage Group assembled-molecule scaffold-N50 42511350 Primary Assembly LG9 Linkage Group assembled-molecule spanned-gaps 50 Primary Assembly LG9 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG9 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG9 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG9 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG9 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG9 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG9 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG10 Linkage Group all total-length 38609495 Primary Assembly LG10 Linkage Group all ungapped-length 38604095 Primary Assembly LG10 Linkage Group all scaffold-count 1 Primary Assembly LG10 Linkage Group all scaffold-N50 38609495 Primary Assembly LG10 Linkage Group all spanned-gaps 54 Primary Assembly LG10 Linkage Group all unspanned-gaps 0 Primary Assembly LG10 Linkage Group assembled-molecule total-length 38609495 Primary Assembly LG10 Linkage Group assembled-molecule ungapped-length 38604095 Primary Assembly LG10 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG10 Linkage Group assembled-molecule scaffold-N50 38609495 Primary Assembly LG10 Linkage Group assembled-molecule spanned-gaps 54 Primary Assembly LG10 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG10 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG10 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG10 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG10 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG10 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG10 Linkage Group unlocalized-scaffold unspanned-gaps 0 Primary Assembly LG11 Linkage Group all total-length 40280933 Primary Assembly LG11 Linkage Group all ungapped-length 40276833 Primary Assembly LG11 Linkage Group all scaffold-count 1 Primary Assembly LG11 Linkage Group all scaffold-N50 40280933 Primary Assembly LG11 Linkage Group all spanned-gaps 41 Primary Assembly LG11 Linkage Group all unspanned-gaps 0 Primary Assembly LG11 Linkage Group assembled-molecule total-length 40280933 Primary Assembly LG11 Linkage Group assembled-molecule ungapped-length 40276833 Primary Assembly LG11 Linkage Group assembled-molecule scaffold-count 1 Primary Assembly LG11 Linkage Group assembled-molecule scaffold-N50 40280933 Primary Assembly LG11 Linkage Group assembled-molecule spanned-gaps 41 Primary Assembly LG11 Linkage Group assembled-molecule unspanned-gaps 0 Primary Assembly LG11 Linkage Group unlocalized-scaffold total-length 0 Primary Assembly LG11 Linkage Group unlocalized-scaffold ungapped-length 0 Primary Assembly LG11 Linkage Group unlocalized-scaffold scaffold-count 0 Primary Assembly LG11 Linkage Group unlocalized-scaffold scaffold-N50 0 Primary Assembly LG11 Linkage Group unlocalized-scaffold spanned-gaps 0 Primary Assembly LG11 Linkage Group unlocalized-scaffold unspanned-gaps 0