# Assembly Statistics Report # Assembly name: ASM2756231v1 # Organism name: Costus pulverulentus (monocots) # Isolate: 151 # Taxid: 160685 # BioSample: SAMN13824542 # BioProject: PRJNA864859 # Submitter: University of California, Santa Cruz # Date: 2023-01-09 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JANTFE01 # Assembly method: Meraculous v. MAY-2018; HiRise (Dovetail Genomics) v. JUNE-2018 # Expected final version: yes # Genome coverage: 1959.0x # Sequencing technology: Illumina HiSeq; Illumina NextSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_027562315.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_027563485.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # gc-perc gc-count/atgc-count as percentage # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 735858963 all all all all spanned-gaps 63437 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 23271 all all all all scaffold-N50 63174634 all all all all scaffold-L50 5 all all all all scaffold-N75 57921665 all all all all scaffold-N90 32240 all all all all contig-count 86708 all all all all contig-N50 24354 all all all all contig-L50 7715 all all all all total-gap-length 5714696 all all all all molecule-count 9 all all all all top-level-count 23271 all all all all component-count 23271 all all all all gc-perc 39.5 Primary Assembly all all all total-length 735858963 Primary Assembly all all all ungapped-length 730144267 Primary Assembly all all all scaffold-count 23271 Primary Assembly all all all scaffold-N50 63174634 Primary Assembly all all all spanned-gaps 63437 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all all gc-perc 39.5 Primary Assembly all all assembled-molecule total-length 615414110 Primary Assembly all all assembled-molecule ungapped-length 611057371 Primary Assembly all all assembled-molecule scaffold-count 9 Primary Assembly all all assembled-molecule scaffold-N50 68093697 Primary Assembly all all assembled-molecule spanned-gaps 49523 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all assembled-molecule gc-perc 39 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 120444853 Primary Assembly na na unplaced-scaffold ungapped-length 119086896 Primary Assembly na na unplaced-scaffold scaffold-count 23262 Primary Assembly na na unplaced-scaffold scaffold-N50 20450 Primary Assembly na na unplaced-scaffold spanned-gaps 13914 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold gc-perc 40.5 Primary Assembly 1 Chromosome all total-length 84088804 Primary Assembly 1 Chromosome all ungapped-length 83522169 Primary Assembly 1 Chromosome all scaffold-count 1 Primary Assembly 1 Chromosome all scaffold-N50 84088804 Primary Assembly 1 Chromosome all spanned-gaps 6427 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome all gc-perc 39.5 Primary Assembly 1 Chromosome assembled-molecule total-length 84088804 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 83522169 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 84088804 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 6427 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule gc-perc 39.5 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 97275379 Primary Assembly 2 Chromosome all ungapped-length 96634254 Primary Assembly 2 Chromosome all scaffold-count 1 Primary Assembly 2 Chromosome all scaffold-N50 97275379 Primary Assembly 2 Chromosome all spanned-gaps 7382 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome all gc-perc 39.5 Primary Assembly 2 Chromosome assembled-molecule total-length 97275379 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 96634254 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 97275379 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 7382 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule gc-perc 39.5 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 68093697 Primary Assembly 3 Chromosome all ungapped-length 67609521 Primary Assembly 3 Chromosome all scaffold-count 1 Primary Assembly 3 Chromosome all scaffold-N50 68093697 Primary Assembly 3 Chromosome all spanned-gaps 5451 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome all gc-perc 39 Primary Assembly 3 Chromosome assembled-molecule total-length 68093697 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 67609521 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 68093697 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 5451 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule gc-perc 39 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 63174634 Primary Assembly 4 Chromosome all ungapped-length 62692776 Primary Assembly 4 Chromosome all scaffold-count 1 Primary Assembly 4 Chromosome all scaffold-N50 63174634 Primary Assembly 4 Chromosome all spanned-gaps 5528 Primary Assembly 4 Chromosome all unspanned-gaps 0 Primary Assembly 4 Chromosome all gc-perc 39 Primary Assembly 4 Chromosome assembled-molecule total-length 63174634 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 62692776 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 63174634 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 5528 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule gc-perc 39 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 72590938 Primary Assembly 5 Chromosome all ungapped-length 72073399 Primary Assembly 5 Chromosome all scaffold-count 1 Primary Assembly 5 Chromosome all scaffold-N50 72590938 Primary Assembly 5 Chromosome all spanned-gaps 5916 Primary Assembly 5 Chromosome all unspanned-gaps 0 Primary Assembly 5 Chromosome all gc-perc 39 Primary Assembly 5 Chromosome assembled-molecule total-length 72590938 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 72073399 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 72590938 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 5916 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule gc-perc 39 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 57921665 Primary Assembly 6 Chromosome all ungapped-length 57541003 Primary Assembly 6 Chromosome all scaffold-count 1 Primary Assembly 6 Chromosome all scaffold-N50 57921665 Primary Assembly 6 Chromosome all spanned-gaps 4360 Primary Assembly 6 Chromosome all unspanned-gaps 0 Primary Assembly 6 Chromosome all gc-perc 39 Primary Assembly 6 Chromosome assembled-molecule total-length 57921665 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 57541003 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 57921665 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 4360 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule gc-perc 39 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 59687411 Primary Assembly 7 Chromosome all ungapped-length 59244201 Primary Assembly 7 Chromosome all scaffold-count 1 Primary Assembly 7 Chromosome all scaffold-N50 59687411 Primary Assembly 7 Chromosome all spanned-gaps 4924 Primary Assembly 7 Chromosome all unspanned-gaps 0 Primary Assembly 7 Chromosome all gc-perc 39 Primary Assembly 7 Chromosome assembled-molecule total-length 59687411 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 59244201 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 59687411 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 4924 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule gc-perc 39 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 8 Chromosome all total-length 59550407 Primary Assembly 8 Chromosome all ungapped-length 59095623 Primary Assembly 8 Chromosome all scaffold-count 1 Primary Assembly 8 Chromosome all scaffold-N50 59550407 Primary Assembly 8 Chromosome all spanned-gaps 5082 Primary Assembly 8 Chromosome all unspanned-gaps 0 Primary Assembly 8 Chromosome all gc-perc 39 Primary Assembly 8 Chromosome assembled-molecule total-length 59550407 Primary Assembly 8 Chromosome assembled-molecule ungapped-length 59095623 Primary Assembly 8 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 8 Chromosome assembled-molecule scaffold-N50 59550407 Primary Assembly 8 Chromosome assembled-molecule spanned-gaps 5082 Primary Assembly 8 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 8 Chromosome assembled-molecule gc-perc 39 Primary Assembly 8 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 8 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 9 Chromosome all total-length 53031175 Primary Assembly 9 Chromosome all ungapped-length 52644425 Primary Assembly 9 Chromosome all scaffold-count 1 Primary Assembly 9 Chromosome all scaffold-N50 53031175 Primary Assembly 9 Chromosome all spanned-gaps 4453 Primary Assembly 9 Chromosome all unspanned-gaps 0 Primary Assembly 9 Chromosome all gc-perc 39 Primary Assembly 9 Chromosome assembled-molecule total-length 53031175 Primary Assembly 9 Chromosome assembled-molecule ungapped-length 52644425 Primary Assembly 9 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 9 Chromosome assembled-molecule scaffold-N50 53031175 Primary Assembly 9 Chromosome assembled-molecule spanned-gaps 4453 Primary Assembly 9 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 9 Chromosome assembled-molecule gc-perc 39 Primary Assembly 9 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 9 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold unspanned-gaps 0