# Assembly Statistics Report # Assembly name: Ta-2021 # Organism name: Taxus chinensis (Chinese yew) # Isolate: Ta-2019 # Sex: female # Taxid: 29808 # BioSample: SAMN19228971 # BioProject: PRJNA730337 # Submitter: Chinese academy of agriculture sciences # Date: 2022-01-26 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAHRHJ02 # Assembly method: WTDBG v. 2.5 # Expected final version: no # Genome coverage: 35.0x # Sequencing technology: PacBio Sequel # RefSeq category: Representative Genome # GenBank assembly accession: GCA_019776745.2 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_019776815.2 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # gc-perc gc-count/atgc-count as percentage # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 10237952243 all all all all spanned-gaps 12087 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 3813 all all all all scaffold-N50 903737476 all all all all scaffold-L50 6 all all all all scaffold-N75 769507007 all all all all scaffold-N90 659955358 all all all all contig-count 15900 all all all all contig-N50 2434892 all all all all contig-L50 1202 all all all all total-gap-length 5776105 all all all all molecule-count 12 all all all all top-level-count 3813 all all all all component-count 3813 all all all all gc-perc 37 Primary Assembly all all all total-length 10237952243 Primary Assembly all all all ungapped-length 10232176138 Primary Assembly all all all scaffold-count 3813 Primary Assembly all all all scaffold-N50 903737476 Primary Assembly all all all spanned-gaps 12087 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all all gc-perc 37 Primary Assembly all all assembled-molecule total-length 9845932558 Primary Assembly all all assembled-molecule ungapped-length 9840157611 Primary Assembly all all assembled-molecule scaffold-count 12 Primary Assembly all all assembled-molecule scaffold-N50 903737476 Primary Assembly all all assembled-molecule spanned-gaps 12085 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all assembled-molecule gc-perc 36.5 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 392019685 Primary Assembly na na unplaced-scaffold ungapped-length 392018527 Primary Assembly na na unplaced-scaffold scaffold-count 3801 Primary Assembly na na unplaced-scaffold scaffold-N50 258372 Primary Assembly na na unplaced-scaffold spanned-gaps 2 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold gc-perc 37.5 Primary Assembly 1 Chromosome all total-length 1051374208 Primary Assembly 1 Chromosome all ungapped-length 1050907086 Primary Assembly 1 Chromosome all scaffold-count 1 Primary Assembly 1 Chromosome all scaffold-N50 1051374208 Primary Assembly 1 Chromosome all spanned-gaps 981 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome all gc-perc 36.5 Primary Assembly 1 Chromosome assembled-molecule total-length 1051374208 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 1050907086 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 1051374208 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 981 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule gc-perc 36.5 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 994982319 Primary Assembly 2 Chromosome all ungapped-length 994456746 Primary Assembly 2 Chromosome all scaffold-count 1 Primary Assembly 2 Chromosome all scaffold-N50 994982319 Primary Assembly 2 Chromosome all spanned-gaps 1100 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome all gc-perc 36.5 Primary Assembly 2 Chromosome assembled-molecule total-length 994982319 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 994456746 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 994982319 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 1100 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule gc-perc 36.5 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 957407293 Primary Assembly 3 Chromosome all ungapped-length 956983792 Primary Assembly 3 Chromosome all scaffold-count 1 Primary Assembly 3 Chromosome all scaffold-N50 957407293 Primary Assembly 3 Chromosome all spanned-gaps 886 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome all gc-perc 37 Primary Assembly 3 Chromosome assembled-molecule total-length 957407293 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 956983792 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 957407293 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 886 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule gc-perc 37 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 949371534 Primary Assembly 4 Chromosome all ungapped-length 949040028 Primary Assembly 4 Chromosome all scaffold-count 1 Primary Assembly 4 Chromosome all scaffold-N50 949371534 Primary Assembly 4 Chromosome all spanned-gaps 693 Primary Assembly 4 Chromosome all unspanned-gaps 0 Primary Assembly 4 Chromosome all gc-perc 36.5 Primary Assembly 4 Chromosome assembled-molecule total-length 949371534 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 949040028 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 949371534 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 693 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule gc-perc 36.5 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 903737476 Primary Assembly 5 Chromosome all ungapped-length 903395821 Primary Assembly 5 Chromosome all scaffold-count 1 Primary Assembly 5 Chromosome all scaffold-N50 903737476 Primary Assembly 5 Chromosome all spanned-gaps 710 Primary Assembly 5 Chromosome all unspanned-gaps 0 Primary Assembly 5 Chromosome all gc-perc 36.5 Primary Assembly 5 Chromosome assembled-molecule total-length 903737476 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 903395821 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 903737476 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 710 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule gc-perc 36.5 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 908182231 Primary Assembly 6 Chromosome all ungapped-length 907015688 Primary Assembly 6 Chromosome all scaffold-count 1 Primary Assembly 6 Chromosome all scaffold-N50 908182231 Primary Assembly 6 Chromosome all spanned-gaps 2434 Primary Assembly 6 Chromosome all unspanned-gaps 0 Primary Assembly 6 Chromosome all gc-perc 37 Primary Assembly 6 Chromosome assembled-molecule total-length 908182231 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 907015688 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 908182231 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 2434 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule gc-perc 37 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 785842148 Primary Assembly 7 Chromosome all ungapped-length 785025948 Primary Assembly 7 Chromosome all scaffold-count 1 Primary Assembly 7 Chromosome all scaffold-N50 785842148 Primary Assembly 7 Chromosome all spanned-gaps 1715 Primary Assembly 7 Chromosome all unspanned-gaps 0 Primary Assembly 7 Chromosome all gc-perc 36.5 Primary Assembly 7 Chromosome assembled-molecule total-length 785842148 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 785025948 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 785842148 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 1715 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule gc-perc 36.5 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 8 Chromosome all total-length 773273111 Primary Assembly 8 Chromosome all ungapped-length 772872504 Primary Assembly 8 Chromosome all scaffold-count 1 Primary Assembly 8 Chromosome all scaffold-N50 773273111 Primary Assembly 8 Chromosome all spanned-gaps 842 Primary Assembly 8 Chromosome all unspanned-gaps 0 Primary Assembly 8 Chromosome all gc-perc 36.5 Primary Assembly 8 Chromosome assembled-molecule total-length 773273111 Primary Assembly 8 Chromosome assembled-molecule ungapped-length 772872504 Primary Assembly 8 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 8 Chromosome assembled-molecule scaffold-N50 773273111 Primary Assembly 8 Chromosome assembled-molecule spanned-gaps 842 Primary Assembly 8 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 8 Chromosome assembled-molecule gc-perc 36.5 Primary Assembly 8 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 8 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 9 Chromosome all total-length 769507007 Primary Assembly 9 Chromosome all ungapped-length 769182196 Primary Assembly 9 Chromosome all scaffold-count 1 Primary Assembly 9 Chromosome all scaffold-N50 769507007 Primary Assembly 9 Chromosome all spanned-gaps 673 Primary Assembly 9 Chromosome all unspanned-gaps 0 Primary Assembly 9 Chromosome all gc-perc 36.5 Primary Assembly 9 Chromosome assembled-molecule total-length 769507007 Primary Assembly 9 Chromosome assembled-molecule ungapped-length 769182196 Primary Assembly 9 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 9 Chromosome assembled-molecule scaffold-N50 769507007 Primary Assembly 9 Chromosome assembled-molecule spanned-gaps 673 Primary Assembly 9 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 9 Chromosome assembled-molecule gc-perc 36.5 Primary Assembly 9 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 9 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 10 Chromosome all total-length 680729269 Primary Assembly 10 Chromosome all ungapped-length 680239694 Primary Assembly 10 Chromosome all scaffold-count 1 Primary Assembly 10 Chromosome all scaffold-N50 680729269 Primary Assembly 10 Chromosome all spanned-gaps 1024 Primary Assembly 10 Chromosome all unspanned-gaps 0 Primary Assembly 10 Chromosome all gc-perc 37 Primary Assembly 10 Chromosome assembled-molecule total-length 680729269 Primary Assembly 10 Chromosome assembled-molecule ungapped-length 680239694 Primary Assembly 10 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 10 Chromosome assembled-molecule scaffold-N50 680729269 Primary Assembly 10 Chromosome assembled-molecule spanned-gaps 1024 Primary Assembly 10 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 10 Chromosome assembled-molecule gc-perc 37 Primary Assembly 10 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 10 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 11 Chromosome all total-length 659955358 Primary Assembly 11 Chromosome all ungapped-length 659634675 Primary Assembly 11 Chromosome all scaffold-count 1 Primary Assembly 11 Chromosome all scaffold-N50 659955358 Primary Assembly 11 Chromosome all spanned-gaps 659 Primary Assembly 11 Chromosome all unspanned-gaps 0 Primary Assembly 11 Chromosome all gc-perc 36.5 Primary Assembly 11 Chromosome assembled-molecule total-length 659955358 Primary Assembly 11 Chromosome assembled-molecule ungapped-length 659634675 Primary Assembly 11 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 11 Chromosome assembled-molecule scaffold-N50 659955358 Primary Assembly 11 Chromosome assembled-molecule spanned-gaps 659 Primary Assembly 11 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 11 Chromosome assembled-molecule gc-perc 36.5 Primary Assembly 11 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 11 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 11 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 11 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 12 Chromosome all total-length 411570604 Primary Assembly 12 Chromosome all ungapped-length 411403433 Primary Assembly 12 Chromosome all scaffold-count 1 Primary Assembly 12 Chromosome all scaffold-N50 411570604 Primary Assembly 12 Chromosome all spanned-gaps 368 Primary Assembly 12 Chromosome all unspanned-gaps 0 Primary Assembly 12 Chromosome all gc-perc 37.5 Primary Assembly 12 Chromosome assembled-molecule total-length 411570604 Primary Assembly 12 Chromosome assembled-molecule ungapped-length 411403433 Primary Assembly 12 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 12 Chromosome assembled-molecule scaffold-N50 411570604 Primary Assembly 12 Chromosome assembled-molecule spanned-gaps 368 Primary Assembly 12 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 12 Chromosome assembled-molecule gc-perc 37.5 Primary Assembly 12 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 12 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 12 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 12 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 12 Chromosome unlocalized-scaffold unspanned-gaps 0