# Assembly Statistics Report # Assembly name: Zm-Mo17-REFERENCE-CAU-1.0 # Organism name: Zea mays (maize) # Infraspecific name: cultivar=inbred line Mo17 # Taxid: 4577 # BioSample: SAMN06169745 # BioProject: PRJNA358298 # Submitter: China Agricultural University # Date: 2018-06-13 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: NCVQ01 # Assembly method: FALCON v. 1.8.7 # Expected final version: no # Genome coverage: 90.0x # Sequencing technology: PacBio # GenBank assembly accession: GCA_003185045.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_003185055.1 Primary Assembly # # Statistic Types # Statistic Description # component-count Number of unique components # contig-L50 Number of contigs that are longer than, or equal to, the N50 length # contig-N50 Contig length at which 50% of total bases in assembly are in contigs of that length or greater # contig-count Number of contigs # molecule-count Number of chromosomes and plasmids in full assembly # region-count Number of genomic regions defined in full assembly # scaffold-L50 Number of scaffolds that are longer than, or equal to, the N50 length # scaffold-N50 Scaffold length at which 50% of total bases in assembly are in scaffolds of that length or greater # scaffold-N75 Scaffold length at which 75% of total bases in assembly are in contigs of that length or greater # scaffold-N90 scaffold length at which 90% of total bases in assembly are in contigs of that length or greater # scaffold-count Number of scaffolds # spanned-gaps Number of spanned gaps. Spanned gaps are gaps within a scaffold # top-level-count Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds # total-gap-length Total length of gaps # total-length Total sequence length including bases and gaps # ungapped-length Total length excluding gaps # unspanned-gaps Number of unspanned gaps. Unspanned gaps are gaps between scaffolds # # Sequence-type Description # all statistic covers all the sequences in the unit-assembly and molecule(s) specified. # molecule statistic covers the specified molecule. molecule-name and molecule-type/loc will be given. # unlocalized statistic covers the sequences assigned to a molecule but with no position. molecule-name and molecule-type/loc will be given. # unplaced statistic covers the sequences not assigned to any molecule in the assembly. # # unit-name molecule-name molecule-type/loc sequence-type statistic value all all all all total-length 2182605176 all all all all spanned-gaps 6837 all all all all unspanned-gaps 0 all all all all region-count 0 all all all all scaffold-count 2203 all all all all scaffold-N50 220382597 all all all all scaffold-L50 5 all all all all scaffold-N75 168720447 all all all all scaffold-N90 149041351 all all all all contig-count 9040 all all all all contig-N50 1491782 all all all all contig-L50 455 all all all all total-gap-length 35154835 all all all all molecule-count 10 all all all all top-level-count 2203 all all all all component-count 2203 Primary Assembly all all all total-length 2182605176 Primary Assembly all all all ungapped-length 2147450341 Primary Assembly all all all scaffold-count 2203 Primary Assembly all all all scaffold-N50 220382597 Primary Assembly all all all spanned-gaps 6837 Primary Assembly all all all unspanned-gaps 0 Primary Assembly all all assembled-molecule total-length 2104465715 Primary Assembly all all assembled-molecule ungapped-length 2069310880 Primary Assembly all all assembled-molecule scaffold-count 10 Primary Assembly all all assembled-molecule scaffold-N50 220382597 Primary Assembly all all assembled-molecule spanned-gaps 6837 Primary Assembly all all assembled-molecule unspanned-gaps 0 Primary Assembly all all unlocalized-scaffold total-length 0 Primary Assembly all all unlocalized-scaffold ungapped-length 0 Primary Assembly all all unlocalized-scaffold scaffold-count 0 Primary Assembly all all unlocalized-scaffold scaffold-N50 0 Primary Assembly all all unlocalized-scaffold spanned-gaps 0 Primary Assembly all all unlocalized-scaffold unspanned-gaps 0 Primary Assembly na na unplaced-scaffold total-length 78139461 Primary Assembly na na unplaced-scaffold ungapped-length 78139461 Primary Assembly na na unplaced-scaffold scaffold-count 2193 Primary Assembly na na unplaced-scaffold scaffold-N50 45705 Primary Assembly na na unplaced-scaffold spanned-gaps 0 Primary Assembly na na unplaced-scaffold unspanned-gaps 0 Primary Assembly 1 Chromosome all total-length 306176853 Primary Assembly 1 Chromosome all ungapped-length 301746192 Primary Assembly 1 Chromosome all scaffold-count 1 Primary Assembly 1 Chromosome all scaffold-N50 306176853 Primary Assembly 1 Chromosome all spanned-gaps 892 Primary Assembly 1 Chromosome all unspanned-gaps 0 Primary Assembly 1 Chromosome assembled-molecule total-length 306176853 Primary Assembly 1 Chromosome assembled-molecule ungapped-length 301746192 Primary Assembly 1 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 1 Chromosome assembled-molecule scaffold-N50 306176853 Primary Assembly 1 Chromosome assembled-molecule spanned-gaps 892 Primary Assembly 1 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 1 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 1 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 1 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 2 Chromosome all total-length 243312244 Primary Assembly 2 Chromosome all ungapped-length 238988726 Primary Assembly 2 Chromosome all scaffold-count 1 Primary Assembly 2 Chromosome all scaffold-N50 243312244 Primary Assembly 2 Chromosome all spanned-gaps 875 Primary Assembly 2 Chromosome all unspanned-gaps 0 Primary Assembly 2 Chromosome assembled-molecule total-length 243312244 Primary Assembly 2 Chromosome assembled-molecule ungapped-length 238988726 Primary Assembly 2 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 2 Chromosome assembled-molecule scaffold-N50 243312244 Primary Assembly 2 Chromosome assembled-molecule spanned-gaps 875 Primary Assembly 2 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 2 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 2 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 2 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 3 Chromosome all total-length 240957546 Primary Assembly 3 Chromosome all ungapped-length 236923044 Primary Assembly 3 Chromosome all scaffold-count 1 Primary Assembly 3 Chromosome all scaffold-N50 240957546 Primary Assembly 3 Chromosome all spanned-gaps 807 Primary Assembly 3 Chromosome all unspanned-gaps 0 Primary Assembly 3 Chromosome assembled-molecule total-length 240957546 Primary Assembly 3 Chromosome assembled-molecule ungapped-length 236923044 Primary Assembly 3 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 3 Chromosome assembled-molecule scaffold-N50 240957546 Primary Assembly 3 Chromosome assembled-molecule spanned-gaps 807 Primary Assembly 3 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 3 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 3 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 3 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 4 Chromosome all total-length 249748977 Primary Assembly 4 Chromosome all ungapped-length 246028418 Primary Assembly 4 Chromosome all scaffold-count 1 Primary Assembly 4 Chromosome all scaffold-N50 249748977 Primary Assembly 4 Chromosome all spanned-gaps 756 Primary Assembly 4 Chromosome all unspanned-gaps 0 Primary Assembly 4 Chromosome assembled-molecule total-length 249748977 Primary Assembly 4 Chromosome assembled-molecule ungapped-length 246028418 Primary Assembly 4 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 4 Chromosome assembled-molecule scaffold-N50 249748977 Primary Assembly 4 Chromosome assembled-molecule spanned-gaps 756 Primary Assembly 4 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 4 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 4 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 4 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 5 Chromosome all total-length 220382597 Primary Assembly 5 Chromosome all ungapped-length 215540169 Primary Assembly 5 Chromosome all scaffold-count 1 Primary Assembly 5 Chromosome all scaffold-N50 220382597 Primary Assembly 5 Chromosome all spanned-gaps 837 Primary Assembly 5 Chromosome all unspanned-gaps 0 Primary Assembly 5 Chromosome assembled-molecule total-length 220382597 Primary Assembly 5 Chromosome assembled-molecule ungapped-length 215540169 Primary Assembly 5 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 5 Chromosome assembled-molecule scaffold-N50 220382597 Primary Assembly 5 Chromosome assembled-molecule spanned-gaps 837 Primary Assembly 5 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 5 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 5 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 5 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 6 Chromosome all total-length 168720447 Primary Assembly 6 Chromosome all ungapped-length 166614089 Primary Assembly 6 Chromosome all scaffold-count 1 Primary Assembly 6 Chromosome all scaffold-N50 168720447 Primary Assembly 6 Chromosome all spanned-gaps 476 Primary Assembly 6 Chromosome all unspanned-gaps 0 Primary Assembly 6 Chromosome assembled-molecule total-length 168720447 Primary Assembly 6 Chromosome assembled-molecule ungapped-length 166614089 Primary Assembly 6 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 6 Chromosome assembled-molecule scaffold-N50 168720447 Primary Assembly 6 Chromosome assembled-molecule spanned-gaps 476 Primary Assembly 6 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 6 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 6 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 6 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 7 Chromosome all total-length 178574342 Primary Assembly 7 Chromosome all ungapped-length 175349470 Primary Assembly 7 Chromosome all scaffold-count 1 Primary Assembly 7 Chromosome all scaffold-N50 178574342 Primary Assembly 7 Chromosome all spanned-gaps 551 Primary Assembly 7 Chromosome all unspanned-gaps 0 Primary Assembly 7 Chromosome assembled-molecule total-length 178574342 Primary Assembly 7 Chromosome assembled-molecule ungapped-length 175349470 Primary Assembly 7 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 7 Chromosome assembled-molecule scaffold-N50 178574342 Primary Assembly 7 Chromosome assembled-molecule spanned-gaps 551 Primary Assembly 7 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 7 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 7 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 7 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 8 Chromosome all total-length 182612305 Primary Assembly 8 Chromosome all ungapped-length 178476394 Primary Assembly 8 Chromosome all scaffold-count 1 Primary Assembly 8 Chromosome all scaffold-N50 182612305 Primary Assembly 8 Chromosome all spanned-gaps 757 Primary Assembly 8 Chromosome all unspanned-gaps 0 Primary Assembly 8 Chromosome assembled-molecule total-length 182612305 Primary Assembly 8 Chromosome assembled-molecule ungapped-length 178476394 Primary Assembly 8 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 8 Chromosome assembled-molecule scaffold-N50 182612305 Primary Assembly 8 Chromosome assembled-molecule spanned-gaps 757 Primary Assembly 8 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 8 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 8 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 8 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 9 Chromosome all total-length 164939053 Primary Assembly 9 Chromosome all ungapped-length 162177663 Primary Assembly 9 Chromosome all scaffold-count 1 Primary Assembly 9 Chromosome all scaffold-N50 164939053 Primary Assembly 9 Chromosome all spanned-gaps 548 Primary Assembly 9 Chromosome all unspanned-gaps 0 Primary Assembly 9 Chromosome assembled-molecule total-length 164939053 Primary Assembly 9 Chromosome assembled-molecule ungapped-length 162177663 Primary Assembly 9 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 9 Chromosome assembled-molecule scaffold-N50 164939053 Primary Assembly 9 Chromosome assembled-molecule spanned-gaps 548 Primary Assembly 9 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 9 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 9 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 9 Chromosome unlocalized-scaffold unspanned-gaps 0 Primary Assembly 10 Chromosome all total-length 149041351 Primary Assembly 10 Chromosome all ungapped-length 147466715 Primary Assembly 10 Chromosome all scaffold-count 1 Primary Assembly 10 Chromosome all scaffold-N50 149041351 Primary Assembly 10 Chromosome all spanned-gaps 338 Primary Assembly 10 Chromosome all unspanned-gaps 0 Primary Assembly 10 Chromosome assembled-molecule total-length 149041351 Primary Assembly 10 Chromosome assembled-molecule ungapped-length 147466715 Primary Assembly 10 Chromosome assembled-molecule scaffold-count 1 Primary Assembly 10 Chromosome assembled-molecule scaffold-N50 149041351 Primary Assembly 10 Chromosome assembled-molecule spanned-gaps 338 Primary Assembly 10 Chromosome assembled-molecule unspanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold total-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold ungapped-length 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-count 0 Primary Assembly 10 Chromosome unlocalized-scaffold scaffold-N50 0 Primary Assembly 10 Chromosome unlocalized-scaffold spanned-gaps 0 Primary Assembly 10 Chromosome unlocalized-scaffold unspanned-gaps 0